Wall clock time and date at job start Fri Apr 10 2020 18:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 110.65729 * 2 1 4 4 N 1.47317 * 110.59660 * 122.91169 * 2 1 3 5 5 C 1.34527 * 106.61579 * 118.75423 * 4 2 1 6 6 O 1.21542 * 123.76861 * 179.76750 * 5 4 2 7 7 N 1.33785 * 112.46096 * 359.60545 * 5 4 2 8 8 C 1.46505 * 124.17983 * 180.21031 * 7 5 4 9 9 C 1.50702 * 109.47210 * 270.22636 * 8 7 5 10 10 O 1.21289 * 119.99844 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99677 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99495 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.64046 * 325.69799 * 12 11 9 14 14 C 1.55159 * 110.71642 * 202.56257 * 12 11 9 15 15 C 1.55391 * 101.36230 * 277.04218 * 14 12 11 16 16 N 1.47424 * 104.87534 * 323.02118 * 15 14 12 17 17 C 1.36938 * 125.64443 * 204.10080 * 16 15 14 18 18 H 1.08008 * 119.99563 * 180.02562 * 17 16 15 19 19 C 1.38808 * 120.00316 * 0.03650 * 17 16 15 20 20 N 1.31619 * 120.00231 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00102 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47130 * 60.00031 * 21 19 17 23 23 H 1.48502 * 109.47337 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47418 * 300.00155 * 21 19 17 25 25 C 1.47015 * 108.70593 * 24.12957 * 16 15 14 26 26 C 1.34771 * 111.64603 * 0.41435 * 7 5 4 27 27 O 1.21225 * 127.16082 * 179.72976 * 26 7 5 28 28 H 1.09003 * 109.46820 * 298.54159 * 1 2 3 29 29 H 1.09003 * 109.46938 * 58.54290 * 1 2 3 30 30 H 1.09004 * 109.47024 * 178.54268 * 1 2 3 31 31 H 1.08999 * 109.47338 * 181.46097 * 3 2 1 32 32 H 1.08999 * 109.46956 * 301.45830 * 3 2 1 33 33 H 1.08995 * 109.47583 * 61.45718 * 3 2 1 34 34 H 0.97001 * 126.68790 * 298.48341 * 4 2 1 35 35 H 1.08999 * 109.46656 * 30.22500 * 8 7 5 36 36 H 1.09002 * 109.46978 * 150.22931 * 8 7 5 37 37 H 0.96995 * 119.99962 * 0.02562 * 11 9 8 38 38 H 1.08997 * 111.00880 * 35.20913 * 14 12 11 39 39 H 1.08994 * 111.00161 * 159.06863 * 14 12 11 40 40 H 1.09001 * 110.34511 * 204.16783 * 15 14 12 41 41 H 1.08997 * 110.35200 * 81.87157 * 15 14 12 42 42 H 0.96997 * 120.00473 * 179.97438 * 20 19 17 43 43 H 1.08995 * 109.88725 * 239.52995 * 25 16 15 44 44 H 1.09002 * 109.88534 * 118.36046 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4316 0.0000 4 7 2.0483 -0.7493 1.1577 5 6 2.7641 -1.7752 0.6628 6 8 3.3374 -2.5944 1.3538 7 7 2.7715 -1.7949 -0.6749 8 6 3.4675 -2.8024 -1.4793 9 6 4.8748 -2.3398 -1.7559 10 8 5.2588 -1.2737 -1.3233 11 7 5.7070 -3.1112 -2.4832 12 6 7.0753 -2.6617 -2.7517 13 1 7.1082 -1.5783 -2.8667 14 6 7.6469 -3.3651 -4.0110 15 6 8.1361 -4.7134 -3.4131 16 7 8.6676 -4.3667 -2.0824 17 6 9.5996 -5.0861 -1.3831 18 1 9.9252 -4.7469 -0.4108 19 6 10.1260 -6.2511 -1.9240 20 7 9.7290 -6.6646 -3.1088 21 14 11.3969 -7.2327 -0.9697 22 1 10.8151 -7.6693 0.3251 23 1 11.7964 -8.4253 -1.7594 24 1 12.5891 -6.3845 -0.7157 25 6 8.0308 -3.1211 -1.6302 26 6 2.0633 -0.7711 -1.1911 27 8 1.8895 -0.5188 -2.3641 28 1 -0.3633 0.4910 0.9028 29 1 -0.3633 0.5363 -0.8767 30 1 -0.3633 -1.0274 -0.0261 31 1 3.1592 1.4092 -0.0262 32 1 1.6961 1.9607 -0.8766 33 1 1.7385 1.9449 0.9027 34 1 1.9049 -0.5410 2.0942 35 1 3.4957 -3.7461 -0.9346 36 1 2.9392 -2.9427 -2.4223 37 1 5.3999 -3.9639 -2.8288 38 1 6.8683 -3.5244 -4.7569 39 1 8.4784 -2.7991 -4.4310 40 1 8.9218 -5.1412 -4.0357 41 1 7.3035 -5.4106 -3.3191 42 1 10.0970 -7.4785 -3.4869 43 1 8.7900 -2.3590 -1.4549 44 1 7.4676 -3.3037 -0.7150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016173541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:17 Heat of formation + Delta-G solvation = -42.266966 kcal Electronic energy + Delta-G solvation = -28278.461181 eV Core-core repulsion = 24232.974843 eV Total energy + Delta-G solvation = -4045.486338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.79442 -39.62468 -38.81671 -37.34322 -36.76348 -35.33420 -33.87358 -32.00074 -31.68718 -29.52934 -28.70931 -27.99772 -27.00600 -24.61266 -24.33662 -22.56849 -21.19431 -20.35431 -20.18813 -19.83947 -18.22160 -17.77783 -16.92537 -16.62633 -16.29184 -16.04213 -15.95900 -15.34998 -14.98487 -14.77602 -14.62029 -14.36104 -13.98963 -13.77971 -13.51145 -13.16136 -13.10404 -12.79474 -12.74595 -12.69885 -12.24088 -12.04891 -11.95570 -11.62138 -11.06903 -11.01886 -10.86997 -10.77576 -10.61144 -10.38489 -10.34456 -10.14318 -9.88828 -9.81473 -9.59919 -9.44998 -8.78640 -8.61788 -6.83520 -5.65591 -3.06436 1.40574 1.84741 2.67593 2.76883 2.83018 3.40619 3.42552 3.46090 3.47697 3.60809 4.10634 4.32169 4.50280 4.67932 4.74560 4.97222 5.00336 5.06603 5.10170 5.19319 5.21465 5.34430 5.44060 5.46034 5.48861 5.50413 5.66852 5.74686 5.85185 6.24498 6.33831 6.47764 6.52198 6.52409 6.73585 6.79782 7.01328 7.12015 7.42167 7.62016 7.68517 7.82697 7.92636 8.31967 8.36533 9.22666 9.83063 10.47344 11.38730 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.024400 B = 0.002801 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.288025 B = 9992.444386 C =10539.846323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.120 3.880 3 C -0.148 4.148 4 N -0.721 5.721 5 C 0.708 3.292 6 O -0.534 6.534 7 N -0.559 5.559 8 C 0.097 3.903 9 C 0.501 3.499 10 O -0.537 6.537 11 N -0.703 5.703 12 C 0.132 3.868 13 H 0.088 0.912 14 C -0.153 4.153 15 C 0.152 3.848 16 N -0.603 5.603 17 C -0.220 4.220 18 H 0.076 0.924 19 C -0.012 4.012 20 N -0.925 5.925 21 Si 0.915 3.085 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.127 3.873 26 C 0.536 3.464 27 O -0.463 6.463 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.439 0.561 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.403 0.597 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.011 0.989 42 H 0.252 0.748 43 H 0.031 0.969 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.420 13.451 2.825 25.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.030 3.970 3 C -0.206 4.206 4 N -0.386 5.386 5 C 0.408 3.592 6 O -0.406 6.406 7 N -0.304 5.304 8 C -0.028 4.028 9 C 0.285 3.715 10 O -0.414 6.414 11 N -0.354 5.354 12 C 0.027 3.973 13 H 0.106 0.894 14 C -0.192 4.192 15 C 0.027 3.973 16 N -0.330 5.330 17 C -0.348 4.348 18 H 0.094 0.906 19 C -0.207 4.207 20 N -0.574 5.574 21 Si 0.746 3.254 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.000 4.000 26 C 0.322 3.678 27 O -0.331 6.331 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.283 0.717 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.237 0.763 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.029 0.971 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -20.737 13.642 2.767 24.975 hybrid contribution 0.518 -0.933 0.828 1.350 sum -20.219 12.709 3.595 24.151 Atomic orbital electron populations 1.22001 0.90149 1.03817 1.04413 1.21456 0.97000 0.94428 0.84133 1.22005 1.02807 0.91643 1.04150 1.45618 1.55151 1.28870 1.08974 1.15773 0.79455 0.82438 0.81485 1.91059 1.47458 1.41486 1.60618 1.45830 1.48326 1.28415 1.07863 1.21516 0.91495 0.91925 0.97854 1.20576 0.87111 0.85100 0.78682 1.90699 1.77094 1.22787 1.50848 1.45877 1.13160 1.22774 1.53628 1.22028 0.79798 0.98719 0.96744 0.89390 1.23429 0.99946 1.00664 0.95204 1.22043 0.98163 0.89877 0.87235 1.44498 1.46772 1.23975 1.17706 1.19053 1.13496 1.02769 0.99503 0.90572 1.24764 1.00528 0.98124 0.97283 1.69760 1.46426 1.24523 1.16680 0.86136 0.81159 0.79357 0.78760 1.21232 1.21575 1.21163 1.21682 0.93513 0.89887 0.94868 1.20774 0.77034 0.79979 0.89984 1.90788 1.57396 1.68387 1.16576 0.90178 0.89701 0.91371 0.90844 0.89799 0.90253 0.71662 0.85348 0.85729 0.76285 0.91596 0.90540 0.87363 0.97096 0.93708 0.95112 0.95544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 8.99 37.16 0.33 -0.38 16 2 C 0.12 0.94 1.37 -132.09 -0.18 0.76 16 3 C -0.15 -0.99 8.99 37.16 0.33 -0.66 16 4 N -0.72 -6.25 5.90 -52.93 -0.31 -6.56 16 5 C 0.71 9.34 8.62 -88.02 -0.76 8.58 16 6 O -0.53 -9.10 17.48 5.33 0.09 -9.01 16 7 N -0.56 -7.08 2.09 -122.02 -0.26 -7.33 16 8 C 0.10 1.19 6.18 -5.19 -0.03 1.16 16 9 C 0.50 8.07 7.90 -10.98 -0.09 7.99 16 10 O -0.54 -10.53 16.12 5.55 0.09 -10.44 16 11 N -0.70 -11.14 5.10 -52.02 -0.27 -11.41 16 12 C 0.13 2.41 3.28 -66.09 -0.22 2.20 16 13 H 0.09 1.60 7.62 -51.93 -0.40 1.21 16 14 C -0.15 -2.77 6.69 -24.32 -0.16 -2.93 16 15 C 0.15 3.54 5.87 -2.27 -0.01 3.53 16 16 N -0.60 -15.58 3.40 -169.77 -0.58 -16.15 16 17 C -0.22 -6.24 10.27 -15.06 -0.15 -6.40 16 18 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 19 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 20 N -0.92 -26.72 10.09 55.49 0.56 -26.16 16 21 Si 0.92 22.35 29.55 -169.99 -5.02 17.33 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.13 2.85 6.99 -3.07 -0.02 2.83 16 26 C 0.54 6.20 6.98 -10.55 -0.07 6.13 16 27 O -0.46 -6.26 17.76 5.60 0.10 -6.16 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.44 2.63 8.96 -40.82 -0.37 2.27 16 35 H 0.13 1.42 7.87 -51.93 -0.41 1.02 16 36 H 0.12 1.15 8.00 -51.93 -0.42 0.74 16 37 H 0.40 5.53 8.63 -40.82 -0.35 5.17 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.11 2.87 5.87 -51.93 -0.31 2.57 16 41 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.03 0.63 8.04 -51.93 -0.42 0.22 16 LS Contribution 368.99 15.07 5.56 5.56 Total: -1.00 -36.82 368.99 -7.59 -44.42 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.43 Total: 3.55 kcal Atomic # 6 Polarization: 23.50 SS G_CDS: -1.13 Total: 22.37 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: -0.85 Total: -67.62 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: 0.28 Total: -25.60 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.82 -7.59 -44.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016173541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.151 kcal (2) G-P(sol) polarization free energy of solvation -36.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds