Wall clock time and date at job start Fri Apr 10 2020 18:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 110.65729 * 2 1 4 4 N 1.47317 * 110.59660 * 122.91169 * 2 1 3 5 5 C 1.34527 * 106.61579 * 118.75423 * 4 2 1 6 6 O 1.21542 * 123.76861 * 179.76750 * 5 4 2 7 7 N 1.33785 * 112.46096 * 359.60545 * 5 4 2 8 8 C 1.46505 * 124.17983 * 180.21031 * 7 5 4 9 9 C 1.50702 * 109.47210 * 270.22636 * 8 7 5 10 10 O 1.21289 * 119.99844 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99677 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99495 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.64046 * 325.69799 * 12 11 9 14 14 C 1.55159 * 110.71642 * 202.56257 * 12 11 9 15 15 C 1.55391 * 101.36230 * 277.04218 * 14 12 11 16 16 N 1.47424 * 104.87534 * 323.02118 * 15 14 12 17 17 C 1.36938 * 125.64443 * 204.10080 * 16 15 14 18 18 H 1.08008 * 119.99563 * 180.02562 * 17 16 15 19 19 C 1.38808 * 120.00316 * 0.03650 * 17 16 15 20 20 N 1.31619 * 120.00231 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00102 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47130 * 60.00031 * 21 19 17 23 23 H 1.48502 * 109.47337 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47418 * 300.00155 * 21 19 17 25 25 C 1.47015 * 108.70593 * 24.12957 * 16 15 14 26 26 C 1.34771 * 111.64603 * 0.41435 * 7 5 4 27 27 O 1.21225 * 127.16082 * 179.72976 * 26 7 5 28 28 H 1.09003 * 109.46820 * 298.54159 * 1 2 3 29 29 H 1.09003 * 109.46938 * 58.54290 * 1 2 3 30 30 H 1.09004 * 109.47024 * 178.54268 * 1 2 3 31 31 H 1.08999 * 109.47338 * 181.46097 * 3 2 1 32 32 H 1.08999 * 109.46956 * 301.45830 * 3 2 1 33 33 H 1.08995 * 109.47583 * 61.45718 * 3 2 1 34 34 H 0.97001 * 126.68790 * 298.48341 * 4 2 1 35 35 H 1.08999 * 109.46656 * 30.22500 * 8 7 5 36 36 H 1.09002 * 109.46978 * 150.22931 * 8 7 5 37 37 H 0.96995 * 119.99962 * 0.02562 * 11 9 8 38 38 H 1.08997 * 111.00880 * 35.20913 * 14 12 11 39 39 H 1.08994 * 111.00161 * 159.06863 * 14 12 11 40 40 H 1.09001 * 110.34511 * 204.16783 * 15 14 12 41 41 H 1.08997 * 110.35200 * 81.87157 * 15 14 12 42 42 H 0.96997 * 120.00473 * 179.97438 * 20 19 17 43 43 H 1.08995 * 109.88725 * 239.52995 * 25 16 15 44 44 H 1.09002 * 109.88534 * 118.36046 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4316 0.0000 4 7 2.0483 -0.7493 1.1577 5 6 2.7641 -1.7752 0.6628 6 8 3.3374 -2.5944 1.3538 7 7 2.7715 -1.7949 -0.6749 8 6 3.4675 -2.8024 -1.4793 9 6 4.8748 -2.3398 -1.7559 10 8 5.2588 -1.2737 -1.3233 11 7 5.7070 -3.1112 -2.4832 12 6 7.0753 -2.6617 -2.7517 13 1 7.1082 -1.5783 -2.8667 14 6 7.6469 -3.3651 -4.0110 15 6 8.1361 -4.7134 -3.4131 16 7 8.6676 -4.3667 -2.0824 17 6 9.5996 -5.0861 -1.3831 18 1 9.9252 -4.7469 -0.4108 19 6 10.1260 -6.2511 -1.9240 20 7 9.7290 -6.6646 -3.1088 21 14 11.3969 -7.2327 -0.9697 22 1 10.8151 -7.6693 0.3251 23 1 11.7964 -8.4253 -1.7594 24 1 12.5891 -6.3845 -0.7157 25 6 8.0308 -3.1211 -1.6302 26 6 2.0633 -0.7711 -1.1911 27 8 1.8895 -0.5188 -2.3641 28 1 -0.3633 0.4910 0.9028 29 1 -0.3633 0.5363 -0.8767 30 1 -0.3633 -1.0274 -0.0261 31 1 3.1592 1.4092 -0.0262 32 1 1.6961 1.9607 -0.8766 33 1 1.7385 1.9449 0.9027 34 1 1.9049 -0.5410 2.0942 35 1 3.4957 -3.7461 -0.9346 36 1 2.9392 -2.9427 -2.4223 37 1 5.3999 -3.9639 -2.8288 38 1 6.8683 -3.5244 -4.7569 39 1 8.4784 -2.7991 -4.4310 40 1 8.9218 -5.1412 -4.0357 41 1 7.3035 -5.4106 -3.3191 42 1 10.0970 -7.4785 -3.4869 43 1 8.7900 -2.3590 -1.4549 44 1 7.4676 -3.3037 -0.7150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016173541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:16 Heat of formation + Delta-G solvation = -70.911031 kcal Electronic energy + Delta-G solvation = -28279.703281 eV Core-core repulsion = 24232.974843 eV Total energy + Delta-G solvation = -4046.728438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.69143 -40.99539 -39.81010 -38.95411 -37.71207 -36.32959 -35.55795 -33.73653 -32.50871 -31.20062 -30.05577 -28.65753 -28.44610 -26.48175 -25.31824 -23.61309 -22.21331 -22.06199 -21.43614 -21.30914 -19.20323 -19.02564 -18.72047 -17.72806 -17.44099 -17.13402 -16.82632 -16.75844 -16.45373 -16.26330 -15.67160 -15.50915 -15.33941 -15.18283 -14.77413 -14.47317 -14.22147 -13.88352 -13.65876 -13.44153 -13.39342 -13.26150 -13.13758 -13.01028 -12.79643 -12.58198 -12.39333 -12.17339 -12.06530 -12.02085 -11.86564 -11.72462 -11.47963 -11.25502 -10.79690 -10.76819 -10.51973 -10.19367 -8.91788 -7.80085 -5.24009 0.50364 0.94260 1.41639 1.45417 1.47993 1.54532 1.75388 2.07941 2.23443 2.47789 2.81421 3.29486 3.49656 3.53014 3.70393 3.76686 3.77508 3.85184 4.02805 4.08727 4.23810 4.26043 4.42544 4.60900 4.61418 4.66714 4.69745 4.74550 4.85721 4.86160 4.93734 5.02697 5.10187 5.20088 5.41013 5.48771 5.61385 5.75923 5.78960 5.90050 6.24275 6.30096 6.42173 7.00805 7.06574 7.10571 7.74800 8.37912 9.21077 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.024400 B = 0.002801 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.288025 B = 9992.444386 C =10539.846323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.126 3.874 3 C -0.145 4.145 4 N -0.700 5.700 5 C 0.701 3.299 6 O -0.582 6.582 7 N -0.566 5.566 8 C 0.098 3.902 9 C 0.498 3.502 10 O -0.576 6.576 11 N -0.698 5.698 12 C 0.146 3.854 13 H 0.095 0.905 14 C -0.131 4.131 15 C 0.153 3.847 16 N -0.622 5.622 17 C -0.245 4.245 18 H 0.070 0.930 19 C -0.059 4.059 20 N -0.943 5.943 21 Si 0.979 3.021 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.279 1.279 25 C 0.127 3.873 26 C 0.527 3.473 27 O -0.485 6.485 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.452 0.548 35 H 0.139 0.861 36 H 0.158 0.842 37 H 0.414 0.586 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.001 0.999 42 H 0.250 0.750 43 H 0.024 0.976 44 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.382 14.529 2.835 27.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.036 3.964 3 C -0.203 4.203 4 N -0.365 5.365 5 C 0.401 3.599 6 O -0.458 6.458 7 N -0.311 5.311 8 C -0.027 4.027 9 C 0.284 3.716 10 O -0.455 6.455 11 N -0.349 5.349 12 C 0.040 3.960 13 H 0.113 0.887 14 C -0.170 4.170 15 C 0.029 3.971 16 N -0.348 5.348 17 C -0.374 4.374 18 H 0.088 0.912 19 C -0.252 4.252 20 N -0.592 5.592 21 Si 0.807 3.193 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.205 1.205 25 C 0.000 4.000 26 C 0.316 3.684 27 O -0.355 6.355 28 H 0.127 0.873 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.130 0.870 34 H 0.299 0.701 35 H 0.156 0.844 36 H 0.175 0.825 37 H 0.251 0.749 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.019 0.981 42 H 0.059 0.941 43 H 0.042 0.958 44 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -22.755 14.756 2.775 27.262 hybrid contribution 1.119 -1.227 0.840 1.861 sum -21.637 13.529 3.615 25.773 Atomic orbital electron populations 1.22045 0.87116 1.04282 1.06320 1.21686 0.98963 0.94052 0.81717 1.22045 1.00973 0.90997 1.06293 1.45595 1.53548 1.27319 1.10060 1.16022 0.79515 0.82836 0.81512 1.91022 1.49700 1.43527 1.61561 1.45988 1.48301 1.28893 1.07900 1.21635 0.89327 0.92129 0.99613 1.21265 0.88422 0.84401 0.77518 1.90676 1.78124 1.24521 1.52193 1.45782 1.12140 1.23334 1.53657 1.21749 0.80244 0.98972 0.95022 0.88691 1.23263 1.01054 0.97169 0.95467 1.21885 0.96705 0.92458 0.86058 1.44754 1.46683 1.24717 1.18667 1.19333 1.14577 1.03673 0.99853 0.91194 1.25546 1.02369 0.98992 0.98315 1.69990 1.47092 1.24511 1.17603 0.85157 0.78871 0.77830 0.77466 1.20879 1.21320 1.20470 1.21745 0.93907 0.88638 0.95664 1.21464 0.76468 0.79740 0.90741 1.90769 1.58232 1.68830 1.17704 0.87253 0.88858 0.91618 0.93631 0.88879 0.87009 0.70057 0.84354 0.82466 0.74890 0.87897 0.89955 0.90514 0.98138 0.94064 0.95762 0.97629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.99 71.98 0.65 -0.25 16 2 C 0.13 1.70 1.37 2.98 0.00 1.70 16 3 C -0.15 -1.61 8.99 71.98 0.65 -0.96 16 4 N -0.70 -11.05 5.90 -439.80 -2.60 -13.64 16 5 C 0.70 18.21 8.62 179.44 1.55 19.76 16 6 O -0.58 -20.16 17.48 -3.85 -0.07 -20.22 16 7 N -0.57 -13.94 2.09 -777.20 -1.63 -15.56 16 8 C 0.10 2.30 6.18 85.63 0.53 2.83 16 9 C 0.50 15.83 7.90 87.66 0.69 16.52 16 10 O -0.58 -22.70 16.12 -3.06 -0.05 -22.75 16 11 N -0.70 -21.51 5.10 -436.89 -2.23 -23.74 16 12 C 0.15 5.25 3.28 46.18 0.15 5.40 16 13 H 0.10 3.37 7.62 -2.39 -0.02 3.35 16 14 C -0.13 -4.54 6.69 32.16 0.22 -4.32 16 15 C 0.15 7.22 5.87 87.02 0.51 7.73 16 16 N -0.62 -32.80 3.40 -691.04 -2.35 -35.14 16 17 C -0.25 -14.25 10.27 84.03 0.86 -13.39 16 18 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 19 C -0.06 -3.38 5.49 84.86 0.47 -2.92 16 20 N -0.94 -55.26 10.09 21.65 0.22 -55.04 16 21 Si 0.98 46.37 29.55 68.60 2.03 48.40 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 25 C 0.13 5.81 6.99 86.73 0.61 6.42 16 26 C 0.53 11.54 6.98 87.94 0.61 12.15 16 27 O -0.49 -12.50 17.76 -2.86 -0.05 -12.55 16 28 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.45 4.52 8.96 -92.71 -0.83 3.69 16 35 H 0.14 2.99 7.87 -2.39 -0.02 2.97 16 36 H 0.16 2.60 8.00 -2.39 -0.02 2.58 16 37 H 0.41 10.83 8.63 -92.71 -0.80 10.03 16 38 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.08 4.14 5.87 -2.39 -0.01 4.13 16 41 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 42 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 43 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.01 0.28 8.04 -2.39 -0.02 0.26 16 Total: -1.00 -82.67 368.99 0.19 -82.49 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -0.59 Total: 17.10 kcal Atomic # 6 Polarization: 43.18 SS G_CDS: 7.49 Total: 50.67 kcal Atomic # 7 Polarization: -134.56 SS G_CDS: -8.58 Total: -143.13 kcal Atomic # 8 Polarization: -55.36 SS G_CDS: -0.17 Total: -55.52 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -82.67 0.19 -82.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016173541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.577 kcal (2) G-P(sol) polarization free energy of solvation -82.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds