Wall clock time and date at job start Fri Apr 10 2020 18:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 110.65803 * 2 1 4 4 N 1.47310 * 110.60026 * 237.08949 * 2 1 3 5 5 C 1.34529 * 106.61917 * 241.25435 * 4 2 1 6 6 O 1.21541 * 123.77562 * 180.21056 * 5 4 2 7 7 N 1.33798 * 112.45693 * 0.37865 * 5 4 2 8 8 C 1.46497 * 124.17502 * 179.86613 * 7 5 4 9 9 C 1.50702 * 109.47226 * 269.69680 * 8 7 5 10 10 O 1.21280 * 119.99966 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99907 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99660 * 180.02562 * 11 9 8 13 13 H 1.08998 * 112.85505 * 46.09626 * 12 11 9 14 14 C 1.53781 * 113.61271 * 177.39829 * 12 11 9 15 15 C 1.53958 * 87.10936 * 89.18606 * 14 12 11 16 16 H 1.09002 * 113.66846 * 139.89049 * 15 14 12 17 17 N 1.46497 * 113.61688 * 270.84142 * 15 14 12 18 18 C 1.36940 * 120.00470 * 254.95824 * 17 15 14 19 19 H 1.08002 * 119.99411 * 359.97438 * 18 17 15 20 20 C 1.38805 * 120.00388 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00148 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99916 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47443 * 89.99869 * 22 20 18 24 24 H 1.48506 * 109.47447 * 209.99778 * 22 20 18 25 25 H 1.48502 * 109.47426 * 330.00145 * 22 20 18 26 26 C 1.53774 * 87.02025 * 25.36391 * 15 14 12 27 27 C 1.34770 * 111.64261 * 359.59828 * 7 5 4 28 28 O 1.21228 * 127.15475 * 180.26239 * 27 7 5 29 29 H 1.09002 * 109.47250 * 297.08358 * 1 2 3 30 30 H 1.09001 * 109.47097 * 57.08255 * 1 2 3 31 31 H 1.09001 * 109.47372 * 177.08394 * 1 2 3 32 32 H 1.08994 * 109.47627 * 182.90811 * 3 2 1 33 33 H 1.09003 * 109.47374 * 302.91882 * 3 2 1 34 34 H 1.09008 * 109.46844 * 62.91169 * 3 2 1 35 35 H 0.97000 * 126.69110 * 61.50472 * 4 2 1 36 36 H 1.09003 * 109.46744 * 149.70580 * 8 7 5 37 37 H 1.08995 * 109.47643 * 29.70042 * 8 7 5 38 38 H 0.97003 * 120.00300 * 359.97438 * 11 9 8 39 39 H 1.08996 * 113.61899 * 203.66101 * 14 12 11 40 40 H 1.08998 * 113.62037 * 334.48483 * 14 12 11 41 41 H 0.97000 * 120.00075 * 74.94448 * 17 15 14 42 42 H 0.96998 * 120.00092 * 179.97438 * 21 20 18 43 43 H 1.09003 * 113.61877 * 220.04934 * 26 15 14 44 44 H 1.09001 * 113.61776 * 89.22382 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0697 1.4316 0.0000 4 7 2.0483 -0.7492 -1.1576 5 6 2.7640 -1.7752 -0.6628 6 8 3.3370 -2.5947 -1.3537 7 7 2.7715 -1.7949 0.6750 8 6 3.4687 -2.8015 1.4793 9 6 2.5394 -3.9551 1.7560 10 8 1.4064 -3.9384 1.3235 11 7 2.9673 -5.0055 2.4841 12 6 2.0641 -6.1272 2.7526 13 1 1.5261 -6.4594 1.8648 14 6 2.7214 -7.2722 3.5411 15 6 2.2771 -6.5413 4.8213 16 1 1.9111 -7.2087 5.6015 17 7 3.2587 -5.5721 5.3144 18 6 4.0184 -5.8663 6.4151 19 1 3.8935 -6.8129 6.9199 20 6 4.9488 -4.9482 6.8820 21 7 5.6786 -5.2308 7.9402 22 14 5.1652 -3.3113 6.0084 23 1 4.2459 -2.3077 6.6025 24 1 6.5682 -2.8496 6.1623 25 1 4.8535 -3.4751 4.5657 26 6 1.1585 -5.9096 3.9763 27 6 2.0633 -0.7710 1.1912 28 8 1.8895 -0.5188 2.3641 29 1 -0.3634 0.4679 0.9150 30 1 -0.3633 0.5585 -0.8627 31 1 -0.3634 -1.0263 -0.0523 32 1 3.1582 1.4096 -0.0521 33 1 1.6754 1.9687 -0.8627 34 1 1.7600 1.9367 0.9150 35 1 1.9048 -0.5410 -2.0941 36 1 3.7863 -2.3566 2.4224 37 1 4.3418 -3.1608 0.9348 38 1 3.8736 -5.0190 2.8297 39 1 2.2337 -8.2366 3.3990 40 1 3.8032 -7.3228 3.4177 41 1 3.3707 -4.7218 4.8611 42 1 6.3290 -4.5893 8.2662 43 1 0.9786 -4.8591 4.2050 44 1 0.2427 -6.5004 3.9522 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023053733.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:38 Heat of formation + Delta-G solvation = -31.652921 kcal Electronic energy + Delta-G solvation = -28782.207348 eV Core-core repulsion = 24737.181269 eV Total energy + Delta-G solvation = -4045.026078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.80691 -40.03253 -38.82028 -38.12020 -36.80308 -35.35591 -33.82775 -32.80520 -31.79554 -30.57564 -28.91255 -27.98546 -25.31150 -24.76210 -24.32032 -22.94747 -21.97037 -20.93063 -20.21769 -19.16268 -18.19368 -17.81577 -17.54203 -16.70544 -16.28678 -16.06590 -15.93547 -15.54907 -15.09286 -14.83440 -14.64209 -14.45985 -14.36661 -13.98860 -13.80048 -13.39501 -13.08072 -12.79185 -12.72523 -12.69107 -12.48969 -12.19666 -12.03885 -11.99801 -11.80643 -11.06810 -11.02797 -10.95652 -10.60173 -10.49984 -10.36069 -10.30815 -9.87319 -9.81107 -9.63885 -9.50211 -9.05635 -8.75537 -7.38756 -5.86514 -3.23272 1.42214 1.82646 2.60111 2.70845 2.81214 3.17332 3.31857 3.32499 3.38389 3.59701 4.11466 4.33028 4.47465 4.65024 4.68276 4.93927 5.01579 5.02110 5.04757 5.08076 5.09276 5.19306 5.21121 5.26117 5.34634 5.44528 5.51820 5.65647 5.66997 5.72198 6.04501 6.08759 6.26678 6.44919 6.48090 6.52708 6.65119 6.77911 6.86867 7.14438 7.57559 7.88110 7.91356 8.23593 8.33406 9.10099 9.82071 10.01602 11.31571 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014742 B = 0.004078 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.817523 B = 6864.798225 C = 7817.401241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.121 3.879 3 C -0.147 4.147 4 N -0.720 5.720 5 C 0.710 3.290 6 O -0.541 6.541 7 N -0.559 5.559 8 C 0.093 3.907 9 C 0.504 3.496 10 O -0.534 6.534 11 N -0.700 5.700 12 C 0.125 3.875 13 H 0.084 0.916 14 C -0.176 4.176 15 C 0.171 3.829 16 H 0.073 0.927 17 N -0.730 5.730 18 C -0.248 4.248 19 H 0.094 0.906 20 C 0.008 3.992 21 N -0.929 5.929 22 Si 0.884 3.116 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.283 1.283 26 C -0.168 4.168 27 C 0.532 3.468 28 O -0.455 6.455 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.439 0.561 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.408 0.592 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.361 0.639 42 H 0.261 0.739 43 H 0.067 0.933 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.307 10.920 -19.314 23.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.030 3.970 3 C -0.205 4.205 4 N -0.385 5.385 5 C 0.411 3.589 6 O -0.414 6.414 7 N -0.305 5.305 8 C -0.032 4.032 9 C 0.288 3.712 10 O -0.411 6.411 11 N -0.353 5.353 12 C 0.020 3.980 13 H 0.102 0.898 14 C -0.217 4.217 15 C 0.059 3.941 16 H 0.092 0.908 17 N -0.371 5.371 18 C -0.378 4.378 19 H 0.111 0.889 20 C -0.189 4.189 21 N -0.576 5.576 22 Si 0.714 3.286 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.210 1.210 26 C -0.208 4.208 27 C 0.318 3.682 28 O -0.322 6.322 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.283 0.717 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.244 0.756 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.194 0.806 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.726 10.465 -19.008 23.387 hybrid contribution 0.674 1.217 -0.778 1.594 sum -8.052 11.682 -19.786 24.347 Atomic orbital electron populations 1.22008 0.89921 1.04333 1.04298 1.21463 0.97474 0.94030 0.83988 1.22021 1.02087 0.91861 1.04558 1.45603 1.54731 1.29156 1.08997 1.15745 0.79647 0.82069 0.81432 1.91014 1.48430 1.41226 1.60740 1.45825 1.49568 1.27317 1.07791 1.21553 0.95373 0.88098 0.98173 1.20571 0.88493 0.83648 0.78446 1.90683 1.19486 1.79446 1.51491 1.45773 1.17063 1.19202 1.53276 1.21817 0.92132 0.86919 0.97094 0.89847 1.24139 1.01503 0.96574 0.99472 1.21159 0.88782 0.91348 0.92819 0.90847 1.42596 1.43824 1.16950 1.33723 1.19124 1.13029 1.03043 1.02605 0.88852 1.24672 0.98657 0.97924 0.97605 1.69686 1.26781 1.36057 1.25107 0.86622 0.77441 0.85716 0.78792 1.20821 1.21469 1.21021 1.23857 0.98209 1.02063 0.96648 1.20822 0.76986 0.80314 0.90080 1.90836 1.55703 1.69187 1.16524 0.89707 0.90240 0.90858 0.91282 0.90131 0.89601 0.71697 0.85562 0.85318 0.75567 0.89371 0.90580 0.80580 0.92898 0.91427 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.99 37.16 0.33 -0.74 16 2 C 0.12 1.05 1.37 -132.10 -0.18 0.87 16 3 C -0.15 -0.87 8.99 37.16 0.33 -0.53 16 4 N -0.72 -6.34 5.90 -52.94 -0.31 -6.66 16 5 C 0.71 9.39 8.62 -88.01 -0.76 8.63 16 6 O -0.54 -8.76 17.48 5.33 0.09 -8.66 16 7 N -0.56 -7.69 2.09 -122.02 -0.26 -7.95 16 8 C 0.09 1.31 6.18 -5.19 -0.03 1.28 16 9 C 0.50 8.41 7.90 -10.99 -0.09 8.32 16 10 O -0.53 -10.27 16.37 5.56 0.09 -10.18 16 11 N -0.70 -11.28 4.34 -53.02 -0.23 -11.51 16 12 C 0.13 1.98 4.00 -67.12 -0.27 1.71 16 13 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 14 C -0.18 -2.72 7.58 -25.83 -0.20 -2.92 16 15 C 0.17 3.16 4.56 -67.03 -0.31 2.85 16 16 H 0.07 1.37 8.12 -51.93 -0.42 0.95 16 17 N -0.73 -16.46 4.83 -52.55 -0.25 -16.71 16 18 C -0.25 -6.72 10.46 -15.06 -0.16 -6.88 16 19 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 20 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 21 N -0.93 -28.37 13.97 55.49 0.78 -27.59 16 22 Si 0.88 21.27 27.73 -169.99 -4.71 16.56 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.28 -5.98 6.52 56.52 0.37 -5.62 16 26 C -0.17 -2.77 7.61 -25.92 -0.20 -2.97 16 27 C 0.53 7.00 6.98 -10.55 -0.07 6.92 16 28 O -0.45 -7.27 17.76 5.60 0.10 -7.17 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.44 2.57 8.96 -40.82 -0.37 2.20 16 36 H 0.13 1.70 8.00 -51.93 -0.42 1.29 16 37 H 0.13 1.53 7.85 -51.93 -0.41 1.12 16 38 H 0.41 6.44 7.83 -40.82 -0.32 6.12 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.25 8.13 -51.93 -0.42 0.83 16 41 H 0.36 7.99 4.23 -40.82 -0.17 7.82 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 370.77 15.07 5.59 5.59 Total: -1.00 -35.82 370.77 -7.14 -42.97 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -6.34 Total: 14.66 kcal Atomic # 6 Polarization: 18.34 SS G_CDS: -1.69 Total: 16.66 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -0.28 Total: -70.42 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: 0.28 Total: -26.02 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.71 Total: 16.56 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.82 -7.14 -42.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023053733.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.313 kcal (2) G-P(sol) polarization free energy of solvation -35.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds