Wall clock time and date at job start Fri Apr 10 2020 18:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 110.65803 * 2 1 4 4 N 1.47310 * 110.60026 * 237.08949 * 2 1 3 5 5 C 1.34529 * 106.61917 * 241.25435 * 4 2 1 6 6 O 1.21541 * 123.77562 * 180.21056 * 5 4 2 7 7 N 1.33798 * 112.45693 * 0.37865 * 5 4 2 8 8 C 1.46497 * 124.17502 * 179.86613 * 7 5 4 9 9 C 1.50702 * 109.47226 * 269.69680 * 8 7 5 10 10 O 1.21280 * 119.99966 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99907 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99660 * 180.02562 * 11 9 8 13 13 H 1.08998 * 112.85505 * 46.09626 * 12 11 9 14 14 C 1.53781 * 113.61271 * 177.39829 * 12 11 9 15 15 C 1.53958 * 87.10936 * 89.18606 * 14 12 11 16 16 H 1.09002 * 113.66846 * 139.89049 * 15 14 12 17 17 N 1.46497 * 113.61688 * 270.84142 * 15 14 12 18 18 C 1.36940 * 120.00470 * 254.95824 * 17 15 14 19 19 H 1.08002 * 119.99411 * 359.97438 * 18 17 15 20 20 C 1.38805 * 120.00388 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00148 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99916 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47443 * 89.99869 * 22 20 18 24 24 H 1.48506 * 109.47447 * 209.99778 * 22 20 18 25 25 H 1.48502 * 109.47426 * 330.00145 * 22 20 18 26 26 C 1.53774 * 87.02025 * 25.36391 * 15 14 12 27 27 C 1.34770 * 111.64261 * 359.59828 * 7 5 4 28 28 O 1.21228 * 127.15475 * 180.26239 * 27 7 5 29 29 H 1.09002 * 109.47250 * 297.08358 * 1 2 3 30 30 H 1.09001 * 109.47097 * 57.08255 * 1 2 3 31 31 H 1.09001 * 109.47372 * 177.08394 * 1 2 3 32 32 H 1.08994 * 109.47627 * 182.90811 * 3 2 1 33 33 H 1.09003 * 109.47374 * 302.91882 * 3 2 1 34 34 H 1.09008 * 109.46844 * 62.91169 * 3 2 1 35 35 H 0.97000 * 126.69110 * 61.50472 * 4 2 1 36 36 H 1.09003 * 109.46744 * 149.70580 * 8 7 5 37 37 H 1.08995 * 109.47643 * 29.70042 * 8 7 5 38 38 H 0.97003 * 120.00300 * 359.97438 * 11 9 8 39 39 H 1.08996 * 113.61899 * 203.66101 * 14 12 11 40 40 H 1.08998 * 113.62037 * 334.48483 * 14 12 11 41 41 H 0.97000 * 120.00075 * 74.94448 * 17 15 14 42 42 H 0.96998 * 120.00092 * 179.97438 * 21 20 18 43 43 H 1.09003 * 113.61877 * 220.04934 * 26 15 14 44 44 H 1.09001 * 113.61776 * 89.22382 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0697 1.4316 0.0000 4 7 2.0483 -0.7492 -1.1576 5 6 2.7640 -1.7752 -0.6628 6 8 3.3370 -2.5947 -1.3537 7 7 2.7715 -1.7949 0.6750 8 6 3.4687 -2.8015 1.4793 9 6 2.5394 -3.9551 1.7560 10 8 1.4064 -3.9384 1.3235 11 7 2.9673 -5.0055 2.4841 12 6 2.0641 -6.1272 2.7526 13 1 1.5261 -6.4594 1.8648 14 6 2.7214 -7.2722 3.5411 15 6 2.2771 -6.5413 4.8213 16 1 1.9111 -7.2087 5.6015 17 7 3.2587 -5.5721 5.3144 18 6 4.0184 -5.8663 6.4151 19 1 3.8935 -6.8129 6.9199 20 6 4.9488 -4.9482 6.8820 21 7 5.6786 -5.2308 7.9402 22 14 5.1652 -3.3113 6.0084 23 1 4.2459 -2.3077 6.6025 24 1 6.5682 -2.8496 6.1623 25 1 4.8535 -3.4751 4.5657 26 6 1.1585 -5.9096 3.9763 27 6 2.0633 -0.7710 1.1912 28 8 1.8895 -0.5188 2.3641 29 1 -0.3634 0.4679 0.9150 30 1 -0.3633 0.5585 -0.8627 31 1 -0.3634 -1.0263 -0.0523 32 1 3.1582 1.4096 -0.0521 33 1 1.6754 1.9687 -0.8627 34 1 1.7600 1.9367 0.9150 35 1 1.9048 -0.5410 -2.0941 36 1 3.7863 -2.3566 2.4224 37 1 4.3418 -3.1608 0.9348 38 1 3.8736 -5.0190 2.8297 39 1 2.2337 -8.2366 3.3990 40 1 3.8032 -7.3228 3.4177 41 1 3.3707 -4.7218 4.8611 42 1 6.3290 -4.5893 8.2662 43 1 0.9786 -4.8591 4.2050 44 1 0.2427 -6.5004 3.9522 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023053733.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:38 Heat of formation + Delta-G solvation = -59.712801 kcal Electronic energy + Delta-G solvation = -28783.424115 eV Core-core repulsion = 24737.181269 eV Total energy + Delta-G solvation = -4046.242846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.75321 -41.35825 -39.87395 -39.48247 -37.76031 -36.38323 -35.61351 -34.33948 -32.64318 -32.42927 -30.01934 -28.49019 -26.67566 -26.29459 -25.42154 -24.41507 -23.11161 -21.95064 -21.38329 -20.69757 -19.53513 -19.15460 -18.86672 -17.74191 -17.41833 -17.11906 -16.90607 -16.81829 -16.48409 -16.33696 -15.91328 -15.59756 -15.44488 -15.40161 -15.03883 -14.69077 -14.29775 -13.94096 -13.70962 -13.65368 -13.52324 -13.31543 -13.16982 -13.15588 -12.90599 -12.63219 -12.61892 -12.07295 -12.05556 -12.00482 -11.83966 -11.76729 -11.32285 -11.17246 -10.99694 -10.82823 -10.56898 -10.12273 -9.33858 -8.04245 -5.38329 0.44261 0.87348 1.25828 1.32774 1.39078 1.43069 1.68736 2.01464 2.16803 2.44328 2.75157 3.25954 3.38630 3.43430 3.55063 3.65372 3.72408 3.72940 3.83425 3.97353 4.13656 4.18314 4.28648 4.36656 4.57485 4.62301 4.70517 4.74798 4.80059 4.85938 4.93910 4.99574 5.06584 5.15731 5.18991 5.24528 5.51745 5.71821 5.79590 5.84884 6.17833 6.20948 6.31404 6.93944 6.99079 7.04883 7.80744 7.99384 9.17022 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014742 B = 0.004078 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.817523 B = 6864.798225 C = 7817.401241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.129 3.871 3 C -0.142 4.142 4 N -0.696 5.696 5 C 0.705 3.295 6 O -0.576 6.576 7 N -0.566 5.566 8 C 0.088 3.912 9 C 0.501 3.499 10 O -0.564 6.564 11 N -0.700 5.700 12 C 0.126 3.874 13 H 0.094 0.906 14 C -0.154 4.154 15 C 0.148 3.852 16 H 0.068 0.932 17 N -0.733 5.733 18 C -0.231 4.231 19 H 0.063 0.937 20 C -0.058 4.058 21 N -0.980 5.980 22 Si 0.941 3.059 23 H -0.292 1.292 24 H -0.291 1.291 25 H -0.241 1.241 26 C -0.157 4.157 27 C 0.520 3.480 28 O -0.491 6.491 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.454 0.546 36 H 0.132 0.868 37 H 0.149 0.851 38 H 0.409 0.591 39 H 0.121 0.879 40 H 0.068 0.932 41 H 0.363 0.637 42 H 0.258 0.742 43 H 0.044 0.956 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.434 12.364 -22.235 27.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.039 3.961 3 C -0.200 4.200 4 N -0.361 5.361 5 C 0.405 3.595 6 O -0.452 6.452 7 N -0.311 5.311 8 C -0.037 4.037 9 C 0.286 3.714 10 O -0.443 6.443 11 N -0.353 5.353 12 C 0.021 3.979 13 H 0.112 0.888 14 C -0.195 4.195 15 C 0.039 3.961 16 H 0.086 0.914 17 N -0.375 5.375 18 C -0.361 4.361 19 H 0.081 0.919 20 C -0.250 4.250 21 N -0.630 5.630 22 Si 0.769 3.231 23 H -0.219 1.219 24 H -0.217 1.217 25 H -0.165 1.165 26 C -0.196 4.196 27 C 0.308 3.692 28 O -0.362 6.362 29 H 0.104 0.896 30 H 0.135 0.865 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.133 0.867 34 H 0.105 0.895 35 H 0.302 0.698 36 H 0.149 0.851 37 H 0.167 0.833 38 H 0.246 0.754 39 H 0.139 0.861 40 H 0.087 0.913 41 H 0.197 0.803 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.907 11.910 -22.011 26.916 hybrid contribution 0.915 0.666 0.174 1.144 sum -8.992 12.576 -21.837 26.756 Atomic orbital electron populations 1.22049 0.88459 1.03578 1.06130 1.21642 0.98291 0.94696 0.81500 1.22071 1.01970 0.89722 1.06231 1.45531 1.53028 1.27625 1.09957 1.15918 0.79890 0.82575 0.81095 1.90987 1.50152 1.42778 1.61283 1.45991 1.49610 1.27337 1.08196 1.21646 0.95511 0.87562 0.99020 1.21011 0.88435 0.84110 0.77802 1.90659 1.20797 1.80127 1.52689 1.45828 1.17155 1.19292 1.52980 1.21873 0.91952 0.86871 0.97203 0.88816 1.23983 1.01350 0.97713 0.96409 1.21472 0.89150 0.91424 0.94059 0.91386 1.42531 1.44216 1.18024 1.32778 1.19076 1.12550 1.01476 1.03043 0.91912 1.25407 0.98994 1.01867 0.98706 1.69859 1.28216 1.37558 1.27412 0.85647 0.76812 0.80521 0.80143 1.21864 1.21723 1.16543 1.23827 0.98786 1.00919 0.96105 1.21678 0.76308 0.80307 0.90862 1.90806 1.56978 1.70126 1.18246 0.89617 0.86469 0.93096 0.91577 0.86691 0.89475 0.69777 0.85055 0.83338 0.75367 0.86120 0.91331 0.80260 0.93313 0.93680 0.86428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.99 71.98 0.65 -1.07 16 2 C 0.13 1.91 1.37 2.98 0.00 1.92 16 3 C -0.14 -1.20 8.99 71.98 0.65 -0.55 16 4 N -0.70 -10.56 5.90 -439.81 -2.60 -13.16 16 5 C 0.70 17.64 8.62 179.44 1.55 19.19 16 6 O -0.58 -18.07 17.48 -3.85 -0.07 -18.13 16 7 N -0.57 -14.97 2.09 -777.21 -1.63 -16.59 16 8 C 0.09 2.37 6.18 85.63 0.53 2.90 16 9 C 0.50 16.14 7.90 87.66 0.69 16.83 16 10 O -0.56 -21.24 16.37 -3.03 -0.05 -21.29 16 11 N -0.70 -21.41 4.34 -440.04 -1.91 -23.31 16 12 C 0.13 3.70 4.00 45.52 0.18 3.88 16 13 H 0.09 2.64 8.05 -2.39 -0.02 2.62 16 14 C -0.15 -4.40 7.58 31.18 0.24 -4.17 16 15 C 0.15 5.32 4.56 45.58 0.21 5.53 16 16 H 0.07 2.50 8.12 -2.39 -0.02 2.48 16 17 N -0.73 -32.65 4.83 -320.18 -1.55 -34.19 16 18 C -0.23 -12.67 10.46 84.03 0.88 -11.79 16 19 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 20 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 21 N -0.98 -61.65 13.97 21.65 0.30 -61.35 16 22 Si 0.94 43.98 27.73 68.60 1.90 45.88 16 23 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.24 -9.39 6.52 99.48 0.65 -8.74 16 26 C -0.16 -4.89 7.61 31.12 0.24 -4.66 16 27 C 0.52 13.11 6.98 87.94 0.61 13.72 16 28 O -0.49 -15.48 17.76 -2.87 -0.05 -15.53 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.45 3.90 8.96 -92.71 -0.83 3.07 16 36 H 0.13 3.37 8.00 -2.39 -0.02 3.35 16 37 H 0.15 3.32 7.85 -2.39 -0.02 3.30 16 38 H 0.41 12.17 7.83 -92.71 -0.73 11.45 16 39 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.07 2.11 8.13 -2.39 -0.02 2.09 16 41 H 0.36 15.67 4.23 -92.71 -0.39 15.27 16 42 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 43 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -80.82 370.77 0.30 -80.53 By element: Atomic # 1 Polarization: 39.24 SS G_CDS: -0.95 Total: 38.29 kcal Atomic # 6 Polarization: 31.98 SS G_CDS: 6.89 Total: 38.87 kcal Atomic # 7 Polarization: -141.24 SS G_CDS: -7.38 Total: -148.61 kcal Atomic # 8 Polarization: -54.79 SS G_CDS: -0.17 Total: -54.96 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.90 Total: 45.88 kcal Total: -80.82 0.30 -80.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023053733.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.815 kcal (2) G-P(sol) polarization free energy of solvation -80.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds