Wall clock time and date at job start Fri Apr 10 2020 18:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.52676 * 2 1 4 4 C 1.53199 * 109.49663 * 120.08444 * 2 1 3 5 5 N 1.46919 * 108.77534 * 174.58440 * 4 2 1 6 6 C 1.34778 * 120.63061 * 126.37005 * 5 4 2 7 7 O 1.21276 * 119.99925 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99611 * 180.02562 * 6 5 4 9 9 N 1.46505 * 109.46614 * 179.97438 * 8 6 5 10 10 C 1.47308 * 126.69387 * 270.25926 * 9 8 6 11 11 C 1.51579 * 103.59774 * 180.14809 * 10 9 8 12 12 O 1.21233 * 127.16311 * 179.97438 * 11 10 9 13 13 N 1.34773 * 105.68013 * 359.65777 * 11 10 9 14 14 C 1.33795 * 111.64536 * 0.22635 * 13 11 10 15 15 O 1.21531 * 123.76756 * 179.97438 * 14 13 11 16 16 C 1.46930 * 118.73901 * 306.64633 * 5 4 2 17 17 C 1.52753 * 109.01170 * 53.30576 * 16 5 4 18 18 C 1.53039 * 109.38352 * 305.59235 * 17 16 5 19 19 H 1.08999 * 109.46404 * 301.21715 * 18 17 16 20 20 N 1.46505 * 109.46133 * 181.25711 * 18 17 16 21 21 C 1.36934 * 119.99914 * 84.93102 * 20 18 17 22 22 H 1.08003 * 119.99878 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00351 * 180.02562 * 21 20 18 24 24 N 1.31623 * 119.99816 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00535 * 179.97438 * 23 21 20 26 26 H 1.48510 * 109.46827 * 90.00331 * 25 23 21 27 27 H 1.48495 * 109.47341 * 209.99989 * 25 23 21 28 28 H 1.48494 * 109.46983 * 330.00659 * 25 23 21 29 29 H 1.09001 * 109.46662 * 299.91521 * 1 2 3 30 30 H 1.09000 * 109.46829 * 59.91214 * 1 2 3 31 31 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.58315 * 54.79860 * 4 2 1 33 33 H 1.08997 * 109.58637 * 294.37746 * 4 2 1 34 34 H 1.09004 * 109.47493 * 60.00139 * 8 6 5 35 35 H 1.09001 * 109.47242 * 299.99523 * 8 6 5 36 36 H 1.08999 * 110.69646 * 61.57251 * 10 9 8 37 37 H 1.09002 * 110.50179 * 298.63176 * 10 9 8 38 38 H 0.97002 * 124.17615 * 180.18986 * 13 11 10 39 39 H 1.08995 * 109.58742 * 173.14745 * 16 5 4 40 40 H 1.09006 * 109.58177 * 293.56532 * 16 5 4 41 41 H 1.09002 * 109.57163 * 185.55289 * 17 16 5 42 42 H 1.09003 * 109.38448 * 65.51750 * 17 16 5 43 43 H 0.96998 * 120.00023 * 264.93307 * 20 18 17 44 44 H 0.96999 * 120.00174 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0414 -0.7239 1.2496 5 7 3.5046 -0.8293 1.1696 6 6 4.2812 -0.3858 2.1779 7 8 3.7732 0.1062 3.1632 8 6 5.7806 -0.5005 2.0806 9 7 6.3921 0.0484 3.2936 10 6 6.8031 1.4451 3.5175 11 6 7.3664 1.4295 4.9247 12 8 7.8295 2.3667 5.5386 13 7 7.2389 0.1584 5.3540 14 6 6.6836 -0.6241 4.4216 15 8 6.4671 -1.8099 4.5763 16 6 4.1055 -1.4217 -0.0333 17 6 3.5709 -0.6951 -1.2660 18 6 2.0408 -0.7231 -1.2483 19 1 1.6966 -1.7572 -1.2353 20 7 1.5265 -0.0528 -2.4453 21 6 1.3964 -0.7490 -3.6172 22 1 1.6725 -1.7923 -3.6591 23 6 0.9096 -0.1139 -4.7515 24 7 0.5736 1.1577 -4.7006 25 14 0.7327 -1.0634 -6.3504 26 1 -0.6189 -1.6752 -6.4158 27 1 0.9135 -0.1385 -7.4979 28 1 1.7628 -2.1314 -6.4083 29 1 -0.3633 0.5125 0.8908 30 1 -0.3633 0.5152 -0.8892 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6052 -1.7218 1.2979 33 1 1.7638 -0.1581 2.1389 34 1 6.1322 0.0574 1.2126 35 1 6.0588 -1.5491 1.9756 36 1 5.9447 2.1139 3.4555 37 1 7.5704 1.7369 2.8005 38 1 7.5160 -0.1511 6.2306 39 1 5.1895 -1.3161 0.0100 40 1 3.8412 -2.4776 -0.0916 41 1 3.9334 -1.1897 -2.1672 42 1 3.9160 0.3388 -1.2546 43 1 1.2782 0.8841 -2.4076 44 1 0.2331 1.6014 -5.4931 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036215391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:45 Heat of formation + Delta-G solvation = -58.209909 kcal Electronic energy + Delta-G solvation = -27952.642308 eV Core-core repulsion = 23906.464633 eV Total energy + Delta-G solvation = -4046.177676 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.57646 -40.23668 -38.94648 -37.80356 -36.46012 -34.82000 -34.72924 -32.96480 -31.57927 -30.00656 -29.32986 -27.60176 -26.07157 -24.94795 -22.98861 -22.67884 -21.97550 -21.66406 -19.98395 -19.10575 -18.53980 -17.82230 -17.14983 -17.00939 -16.79308 -16.17604 -16.06219 -15.31878 -15.03294 -14.94825 -14.53109 -14.42221 -14.23901 -13.90552 -13.83267 -13.48509 -13.38448 -13.23453 -12.59769 -12.39450 -12.26201 -11.84062 -11.67323 -11.38101 -11.25099 -10.99745 -10.88212 -10.73090 -10.71499 -10.65739 -10.48595 -10.32225 -10.25267 -9.81624 -9.69475 -9.26232 -8.96902 -8.60481 -7.03606 -5.83896 -3.12931 1.24525 1.75042 2.46133 2.57675 2.65210 3.05199 3.37893 3.43359 3.45106 3.67443 4.26076 4.32181 4.51855 4.62881 4.81559 4.84510 4.92311 5.16414 5.17067 5.24893 5.26517 5.44351 5.49737 5.61527 5.63982 5.70396 5.83768 5.88774 6.00808 6.07230 6.20929 6.29162 6.36522 6.43402 6.52961 6.62489 6.72808 6.84784 6.96478 6.97338 7.34444 7.62536 7.73602 8.04019 8.34265 9.45869 10.02714 10.37316 11.38475 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.024688 B = 0.002519 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.871281 B =11111.878175 C =11237.478474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.069 0.931 4 C 0.120 3.880 5 N -0.602 5.602 6 C 0.494 3.506 7 O -0.539 6.539 8 C 0.133 3.867 9 N -0.607 5.607 10 C 0.063 3.937 11 C 0.530 3.470 12 O -0.473 6.473 13 N -0.679 5.679 14 C 0.708 3.292 15 O -0.540 6.540 16 C 0.105 3.895 17 C -0.153 4.153 18 C 0.184 3.816 19 H 0.048 0.952 20 N -0.720 5.720 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.432 0.568 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.943 -2.115 15.100 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.087 0.913 4 C -0.002 4.002 5 N -0.335 5.335 6 C 0.280 3.720 7 O -0.416 6.416 8 C 0.008 3.992 9 N -0.346 5.346 10 C -0.063 4.063 11 C 0.317 3.683 12 O -0.343 6.343 13 N -0.349 5.349 14 C 0.409 3.591 15 O -0.413 6.413 16 C -0.018 4.018 17 C -0.194 4.194 18 C 0.073 3.927 19 H 0.066 0.934 20 N -0.361 5.361 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.736 3.264 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.274 0.726 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.218 0.782 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.707 -2.116 15.660 20.278 hybrid contribution -0.117 -0.288 -0.710 0.775 sum 12.590 -2.404 14.950 19.692 Atomic orbital electron populations 1.21661 0.94071 1.01831 1.01866 1.21744 0.96657 0.99976 0.94546 0.91259 1.21736 0.78134 1.00982 0.99373 1.48175 1.07376 1.60153 1.17829 1.20985 0.89582 0.78381 0.83058 1.90696 1.75126 1.44807 1.31019 1.21262 0.90345 1.02491 0.85085 1.46983 1.63544 1.09326 1.14730 1.22569 1.03048 0.85369 0.95305 1.20786 0.76769 0.82034 0.88749 1.90865 1.42661 1.37959 1.62785 1.44309 1.59625 1.11739 1.19204 1.15741 0.77972 0.84930 0.80492 1.91029 1.57824 1.12403 1.80047 1.21851 0.97240 0.97989 0.84763 1.22629 1.00581 1.00429 0.95802 1.20191 0.90298 0.95779 0.86431 0.93359 1.42406 1.76480 1.11422 1.05745 1.19202 1.36093 0.94090 0.87655 0.91217 1.24733 1.01998 0.96005 0.98081 1.69655 1.49885 1.09459 1.28987 0.86227 0.77820 0.78676 0.83658 1.21747 1.21836 1.20788 0.93838 0.90708 0.93016 0.91439 0.89406 0.86036 0.86043 0.85461 0.85547 0.72553 0.90617 0.91004 0.90318 0.92117 0.78213 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.02 37.16 0.34 -1.77 16 2 C -0.11 -1.65 2.46 -90.49 -0.22 -1.88 16 3 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.12 1.61 5.72 -3.71 -0.02 1.59 16 5 N -0.60 -7.27 2.98 -173.03 -0.52 -7.78 16 6 C 0.49 6.05 7.77 -10.98 -0.09 5.96 16 7 O -0.54 -8.54 15.84 5.56 0.09 -8.45 16 8 C 0.13 1.09 4.97 -5.19 -0.03 1.07 16 9 N -0.61 -5.38 2.51 -181.40 -0.45 -5.84 16 10 C 0.06 0.41 7.66 -4.32 -0.03 0.37 16 11 C 0.53 4.41 8.81 -10.55 -0.09 4.31 16 12 O -0.47 -5.21 18.02 5.60 0.10 -5.11 16 13 N -0.68 -5.60 5.70 -15.79 -0.09 -5.69 16 14 C 0.71 7.63 8.68 -88.02 -0.76 6.87 16 15 O -0.54 -7.73 17.71 5.34 0.09 -7.63 16 16 C 0.10 1.10 6.31 -3.93 -0.02 1.07 16 17 C -0.15 -2.19 5.64 -26.84 -0.15 -2.35 16 18 C 0.18 3.17 2.20 -67.89 -0.15 3.02 16 19 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 20 N -0.72 -16.29 4.41 -53.38 -0.24 -16.52 16 21 C -0.24 -6.12 9.93 -15.06 -0.15 -6.27 16 22 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -26.83 13.06 55.49 0.72 -26.11 16 25 Si 0.91 21.37 29.55 -169.99 -5.02 16.34 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.36 7.36 -51.93 -0.38 0.98 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.25 7.00 -51.93 -0.36 0.89 16 34 H 0.12 0.60 7.68 -51.93 -0.40 0.20 16 35 H 0.12 0.89 7.84 -51.93 -0.41 0.48 16 36 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.13 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.43 2.73 8.96 -40.82 -0.37 2.36 16 39 H 0.08 0.55 5.93 -51.93 -0.31 0.24 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.38 9.45 7.50 -40.82 -0.31 9.15 16 44 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 365.57 15.07 5.51 5.51 Total: -1.00 -34.73 365.57 -7.59 -42.31 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.30 Total: 7.40 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -1.48 Total: 11.57 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -0.57 Total: -61.94 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: 0.28 Total: -21.19 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.73 -7.59 -42.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036215391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.899 kcal (2) G-P(sol) polarization free energy of solvation -34.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds