Wall clock time and date at job start Fri Apr 10 2020 18:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.52676 * 2 1 4 4 C 1.53199 * 109.49663 * 120.08444 * 2 1 3 5 5 N 1.46919 * 108.77534 * 174.58440 * 4 2 1 6 6 C 1.34778 * 120.63061 * 126.37005 * 5 4 2 7 7 O 1.21276 * 119.99925 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99611 * 180.02562 * 6 5 4 9 9 N 1.46505 * 109.46614 * 179.97438 * 8 6 5 10 10 C 1.47308 * 126.69387 * 270.25926 * 9 8 6 11 11 C 1.51579 * 103.59774 * 180.14809 * 10 9 8 12 12 O 1.21233 * 127.16311 * 179.97438 * 11 10 9 13 13 N 1.34773 * 105.68013 * 359.65777 * 11 10 9 14 14 C 1.33795 * 111.64536 * 0.22635 * 13 11 10 15 15 O 1.21531 * 123.76756 * 179.97438 * 14 13 11 16 16 C 1.46930 * 118.73901 * 306.64633 * 5 4 2 17 17 C 1.52753 * 109.01170 * 53.30576 * 16 5 4 18 18 C 1.53039 * 109.38352 * 305.59235 * 17 16 5 19 19 H 1.08999 * 109.46404 * 301.21715 * 18 17 16 20 20 N 1.46505 * 109.46133 * 181.25711 * 18 17 16 21 21 C 1.36934 * 119.99914 * 84.93102 * 20 18 17 22 22 H 1.08003 * 119.99878 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00351 * 180.02562 * 21 20 18 24 24 N 1.31623 * 119.99816 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00535 * 179.97438 * 23 21 20 26 26 H 1.48510 * 109.46827 * 90.00331 * 25 23 21 27 27 H 1.48495 * 109.47341 * 209.99989 * 25 23 21 28 28 H 1.48494 * 109.46983 * 330.00659 * 25 23 21 29 29 H 1.09001 * 109.46662 * 299.91521 * 1 2 3 30 30 H 1.09000 * 109.46829 * 59.91214 * 1 2 3 31 31 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.58315 * 54.79860 * 4 2 1 33 33 H 1.08997 * 109.58637 * 294.37746 * 4 2 1 34 34 H 1.09004 * 109.47493 * 60.00139 * 8 6 5 35 35 H 1.09001 * 109.47242 * 299.99523 * 8 6 5 36 36 H 1.08999 * 110.69646 * 61.57251 * 10 9 8 37 37 H 1.09002 * 110.50179 * 298.63176 * 10 9 8 38 38 H 0.97002 * 124.17615 * 180.18986 * 13 11 10 39 39 H 1.08995 * 109.58742 * 173.14745 * 16 5 4 40 40 H 1.09006 * 109.58177 * 293.56532 * 16 5 4 41 41 H 1.09002 * 109.57163 * 185.55289 * 17 16 5 42 42 H 1.09003 * 109.38448 * 65.51750 * 17 16 5 43 43 H 0.96998 * 120.00023 * 264.93307 * 20 18 17 44 44 H 0.96999 * 120.00174 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0414 -0.7239 1.2496 5 7 3.5046 -0.8293 1.1696 6 6 4.2812 -0.3858 2.1779 7 8 3.7732 0.1062 3.1632 8 6 5.7806 -0.5005 2.0806 9 7 6.3921 0.0484 3.2936 10 6 6.8031 1.4451 3.5175 11 6 7.3664 1.4295 4.9247 12 8 7.8295 2.3667 5.5386 13 7 7.2389 0.1584 5.3540 14 6 6.6836 -0.6241 4.4216 15 8 6.4671 -1.8099 4.5763 16 6 4.1055 -1.4217 -0.0333 17 6 3.5709 -0.6951 -1.2660 18 6 2.0408 -0.7231 -1.2483 19 1 1.6966 -1.7572 -1.2353 20 7 1.5265 -0.0528 -2.4453 21 6 1.3964 -0.7490 -3.6172 22 1 1.6725 -1.7923 -3.6591 23 6 0.9096 -0.1139 -4.7515 24 7 0.5736 1.1577 -4.7006 25 14 0.7327 -1.0634 -6.3504 26 1 -0.6189 -1.6752 -6.4158 27 1 0.9135 -0.1385 -7.4979 28 1 1.7628 -2.1314 -6.4083 29 1 -0.3633 0.5125 0.8908 30 1 -0.3633 0.5152 -0.8892 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6052 -1.7218 1.2979 33 1 1.7638 -0.1581 2.1389 34 1 6.1322 0.0574 1.2126 35 1 6.0588 -1.5491 1.9756 36 1 5.9447 2.1139 3.4555 37 1 7.5704 1.7369 2.8005 38 1 7.5160 -0.1511 6.2306 39 1 5.1895 -1.3161 0.0100 40 1 3.8412 -2.4776 -0.0916 41 1 3.9334 -1.1897 -2.1672 42 1 3.9160 0.3388 -1.2546 43 1 1.2782 0.8841 -2.4076 44 1 0.2331 1.6014 -5.4931 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036215391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:44 Heat of formation + Delta-G solvation = -84.501030 kcal Electronic energy + Delta-G solvation = -27953.782377 eV Core-core repulsion = 23906.464633 eV Total energy + Delta-G solvation = -4047.317744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.28478 -41.23805 -39.75349 -38.98546 -37.29051 -36.15304 -35.54293 -34.43189 -33.02399 -31.10464 -30.51092 -28.39003 -27.20349 -26.42458 -24.40074 -23.37906 -23.04782 -22.65516 -21.17944 -20.12528 -19.25977 -19.01640 -18.61027 -17.78222 -17.60924 -17.03015 -16.88543 -16.71797 -16.22732 -15.80858 -15.66988 -15.42572 -15.33551 -15.10209 -14.94549 -14.78690 -14.36336 -14.03282 -14.01638 -13.56037 -13.14828 -13.11429 -12.90128 -12.84199 -12.71670 -12.42941 -12.17822 -12.11932 -11.98555 -11.80816 -11.63151 -11.49943 -11.44256 -11.24750 -11.10305 -10.82663 -10.02556 -9.64782 -8.92083 -7.88259 -5.15003 0.55285 1.08496 1.51053 1.51810 1.56385 1.59613 1.83271 1.96865 2.20490 2.60688 3.05309 3.43863 3.46952 3.73442 3.84460 3.88309 4.06613 4.13647 4.24033 4.32732 4.34105 4.37271 4.45430 4.54867 4.64395 4.70622 4.82109 4.84574 4.89006 5.01542 5.04608 5.05857 5.14649 5.25327 5.36272 5.44349 5.55339 5.60323 5.69720 5.91645 6.30390 6.33620 6.42371 6.98358 7.11893 7.40476 8.17752 8.39764 9.35310 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.024688 B = 0.002519 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.871281 B =11111.878175 C =11237.478474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 H 0.057 0.943 4 C 0.128 3.872 5 N -0.603 5.603 6 C 0.490 3.510 7 O -0.581 6.581 8 C 0.133 3.867 9 N -0.605 5.605 10 C 0.067 3.933 11 C 0.534 3.466 12 O -0.502 6.502 13 N -0.673 5.673 14 C 0.704 3.296 15 O -0.581 6.581 16 C 0.111 3.889 17 C -0.143 4.143 18 C 0.177 3.823 19 H 0.044 0.956 20 N -0.732 5.732 21 C -0.226 4.226 22 H 0.078 0.922 23 C -0.077 4.077 24 N -0.971 5.971 25 Si 0.964 3.036 26 H -0.293 1.293 27 H -0.301 1.301 28 H -0.267 1.267 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.166 0.834 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.169 0.831 38 H 0.438 0.562 39 H 0.121 0.879 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.370 0.630 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.952 -3.211 15.239 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.118 4.118 3 H 0.076 0.924 4 C 0.004 3.996 5 N -0.336 5.336 6 C 0.278 3.722 7 O -0.461 6.461 8 C 0.009 3.991 9 N -0.342 5.342 10 C -0.058 4.058 11 C 0.323 3.677 12 O -0.374 6.374 13 N -0.342 5.342 14 C 0.405 3.595 15 O -0.457 6.457 16 C -0.011 4.011 17 C -0.184 4.184 18 C 0.068 3.932 19 H 0.062 0.938 20 N -0.371 5.371 21 C -0.358 4.358 22 H 0.096 0.904 23 C -0.269 4.269 24 N -0.623 5.623 25 Si 0.795 3.205 26 H -0.221 1.221 27 H -0.229 1.229 28 H -0.191 1.191 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.183 0.817 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.186 0.814 38 H 0.281 0.719 39 H 0.139 0.861 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.202 0.798 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.760 -3.248 15.821 21.879 hybrid contribution -0.768 0.039 -0.650 1.007 sum 13.992 -3.209 15.171 20.886 Atomic orbital electron populations 1.21588 0.94538 1.01799 1.01059 1.21590 0.96258 0.99292 0.94614 0.92448 1.21526 0.79584 1.00923 0.97554 1.48239 1.06717 1.60119 1.18498 1.21758 0.91271 0.77051 0.82126 1.90685 1.76230 1.46567 1.32584 1.21538 0.87104 1.04365 0.86099 1.47122 1.62641 1.10066 1.14337 1.22790 1.04139 0.84069 0.94760 1.21048 0.75986 0.81358 0.89354 1.90860 1.44171 1.38665 1.63729 1.44268 1.58996 1.11695 1.19276 1.15930 0.77836 0.84607 0.81159 1.90999 1.59651 1.14184 1.80883 1.21931 0.99556 0.97667 0.81933 1.22395 0.97658 1.00696 0.97649 1.20460 0.92427 0.95068 0.85224 0.93805 1.42596 1.76960 1.10855 1.06685 1.19580 1.33424 0.94364 0.88409 0.90417 1.25448 1.03407 0.96866 1.01202 1.69810 1.52211 1.11048 1.29198 0.85263 0.77742 0.77560 0.79957 1.22110 1.22856 1.19136 0.92022 0.94078 0.92618 0.90540 0.90267 0.81703 0.84492 0.85095 0.81424 0.71876 0.86120 0.89840 0.91188 0.92695 0.79796 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 9.02 71.98 0.65 -3.43 16 2 C -0.10 -2.89 2.46 -10.71 -0.03 -2.91 16 3 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 4 C 0.13 3.20 5.72 86.37 0.49 3.69 16 5 N -0.60 -12.80 2.98 -819.74 -2.44 -15.24 16 6 C 0.49 10.55 7.77 87.66 0.68 11.23 16 7 O -0.58 -17.44 15.84 -3.02 -0.05 -17.49 16 8 C 0.13 1.61 4.97 85.63 0.43 2.03 16 9 N -0.60 -8.77 2.51 -846.24 -2.12 -10.89 16 10 C 0.07 0.64 7.66 85.76 0.66 1.30 16 11 C 0.53 7.91 8.81 87.94 0.77 8.68 16 12 O -0.50 -10.46 18.02 -2.88 -0.05 -10.51 16 13 N -0.67 -10.20 5.70 -441.12 -2.52 -12.72 16 14 C 0.70 13.89 8.68 179.44 1.56 15.45 16 15 O -0.58 -15.95 17.71 -3.81 -0.07 -16.01 16 16 C 0.11 1.88 6.31 86.22 0.54 2.43 16 17 C -0.14 -3.76 5.64 30.52 0.17 -3.58 16 18 C 0.18 5.92 2.20 45.02 0.10 6.02 16 19 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 20 N -0.73 -33.28 4.41 -322.81 -1.42 -34.70 16 21 C -0.23 -11.51 9.93 84.03 0.83 -10.67 16 22 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 23 C -0.08 -4.21 5.50 84.86 0.47 -3.75 16 24 N -0.97 -57.31 13.06 21.65 0.28 -57.03 16 25 Si 0.96 44.16 29.55 68.60 2.03 46.19 16 26 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 27 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.04 1.54 7.36 -2.39 -0.02 1.52 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.08 2.17 7.00 -2.39 -0.02 2.16 16 34 H 0.17 0.60 7.68 -2.39 -0.02 0.58 16 35 H 0.14 1.34 7.84 -2.39 -0.02 1.32 16 36 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.17 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.44 5.23 8.96 -92.71 -0.83 4.40 16 39 H 0.12 1.03 5.93 -2.39 -0.01 1.02 16 40 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.37 18.73 7.50 -92.71 -0.70 18.04 16 44 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -78.21 365.57 0.49 -77.72 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: -0.48 Total: 24.20 kcal Atomic # 6 Polarization: 19.16 SS G_CDS: 7.33 Total: 26.49 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -8.22 Total: -130.58 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -0.17 Total: -44.02 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -78.21 0.49 -77.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036215391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.784 kcal (2) G-P(sol) polarization free energy of solvation -78.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds