Wall clock time and date at job start Fri Apr 10 2020 18:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.58732 * 2 1 4 4 C 1.53195 * 109.58376 * 239.57357 * 2 1 3 5 5 C 1.53042 * 109.31222 * 185.57415 * 4 2 1 6 6 H 1.08996 * 109.44931 * 301.35498 * 5 4 2 7 7 N 1.46494 * 109.45924 * 181.38955 * 5 4 2 8 8 C 1.36938 * 120.00181 * 154.93956 * 7 5 4 9 9 H 1.08002 * 119.99752 * 359.97438 * 8 7 5 10 10 C 1.38805 * 120.00349 * 180.02562 * 8 7 5 11 11 N 1.31623 * 119.99925 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00278 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47585 * 179.97438 * 12 10 8 14 14 H 1.48500 * 109.47391 * 59.99214 * 12 10 8 15 15 H 1.48506 * 109.46814 * 299.99699 * 12 10 8 16 16 C 1.53046 * 109.53409 * 61.37089 * 5 4 2 17 17 C 1.53191 * 109.31079 * 298.63432 * 16 5 4 18 18 N 1.46924 * 108.77675 * 54.63721 * 17 16 5 19 19 C 1.34775 * 120.63186 * 126.41324 * 18 17 16 20 20 O 1.21283 * 120.00199 * 174.20629 * 19 18 17 21 21 C 1.50702 * 119.99910 * 354.21337 * 19 18 17 22 22 N 1.46497 * 109.47298 * 180.02562 * 21 19 18 23 23 C 1.34768 * 124.17669 * 269.72433 * 22 21 19 24 24 O 1.21237 * 127.15764 * 0.02562 * 23 22 21 25 25 C 1.51585 * 105.68617 * 179.97438 * 23 22 21 26 26 N 1.47313 * 103.59120 * 0.32019 * 25 23 22 27 27 C 1.33793 * 124.17779 * 90.01979 * 22 21 19 28 28 O 1.21536 * 123.77309 * 359.96638 * 27 22 21 29 29 H 1.09000 * 109.46790 * 305.50875 * 1 2 3 30 30 H 1.08997 * 109.47483 * 65.51373 * 1 2 3 31 31 H 1.09007 * 109.47247 * 185.51156 * 1 2 3 32 32 H 1.09004 * 109.49241 * 65.62826 * 4 2 1 33 33 H 1.08992 * 109.50189 * 305.53350 * 4 2 1 34 34 H 0.97005 * 120.00126 * 334.93315 * 7 5 4 35 35 H 0.96993 * 120.00175 * 0.02562 * 11 10 8 36 36 H 1.08999 * 109.49785 * 58.58110 * 16 5 4 37 37 H 1.08997 * 109.49212 * 178.64885 * 16 5 4 38 38 H 1.09004 * 109.58770 * 174.42581 * 17 16 5 39 39 H 1.09000 * 109.58631 * 294.70564 * 17 16 5 40 40 H 1.09005 * 109.46661 * 299.99760 * 21 19 18 41 41 H 1.09002 * 109.47656 * 59.99837 * 21 19 18 42 42 H 1.08998 * 110.76635 * 241.71383 * 25 23 22 43 43 H 1.09004 * 110.56524 * 118.82658 * 25 23 22 44 44 H 0.97002 * 126.68923 * 179.77283 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2446 5 6 3.5675 -0.8494 -1.1692 6 1 4.0059 0.1461 -1.0995 7 7 4.0651 -1.5186 -2.3737 8 6 5.3492 -1.3011 -2.7968 9 1 5.9949 -0.6359 -2.2428 10 6 5.8205 -1.9347 -3.9383 11 7 5.0334 -2.7450 -4.6138 12 14 7.5719 -1.6374 -4.5159 13 1 7.8274 -2.4257 -5.7482 14 1 8.5214 -2.0577 -3.4543 15 1 7.7596 -0.1928 -4.8041 16 6 3.9569 -1.6657 0.0654 17 6 3.4650 -0.9455 1.3248 18 7 2.0225 -0.6982 1.1953 19 6 1.1675 -1.1037 2.1549 20 8 -0.0055 -0.8026 2.0886 21 6 1.6689 -1.9311 3.3103 22 7 0.5541 -2.2417 4.2086 23 6 0.1872 -1.4738 5.2535 24 8 0.6977 -0.4347 5.6136 25 6 -0.9974 -2.1787 5.8842 26 7 -1.1722 -3.3782 5.0472 27 6 -0.2219 -3.3258 4.0964 28 8 -0.0828 -4.1698 3.2330 29 1 -0.3633 0.5969 0.8366 30 1 -0.3634 0.4259 -0.9352 31 1 -0.3634 -1.0230 0.0987 32 1 1.7659 -0.1694 -2.1366 33 1 1.6029 -1.7268 -1.2893 34 1 3.4850 -2.1158 -2.8714 35 1 4.1239 -2.8991 -4.3142 36 1 3.4982 -2.6529 0.0084 37 1 5.0411 -1.7700 0.1053 38 1 3.6518 -1.5692 2.1990 39 1 3.9921 0.0025 1.4329 40 1 2.1002 -2.8583 2.9330 41 1 2.4296 -1.3717 3.8548 42 1 -1.8871 -1.5502 5.8444 43 1 -0.7727 -2.4587 6.9134 44 1 -1.8421 -4.0707 5.1595 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044849319.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:33 Heat of formation + Delta-G solvation = -40.549151 kcal Electronic energy + Delta-G solvation = -28515.537617 eV Core-core repulsion = 24470.125770 eV Total energy + Delta-G solvation = -4045.411848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.68236 -40.41515 -38.87508 -37.57124 -36.39578 -35.09092 -34.77022 -32.85229 -32.10130 -29.45539 -28.65303 -27.77722 -26.93272 -24.15076 -23.26400 -23.06104 -22.50301 -20.97057 -20.23875 -19.15054 -18.35716 -17.70485 -17.30041 -17.09324 -16.58201 -16.30011 -15.74530 -15.54891 -15.24792 -14.80987 -14.49292 -14.36016 -14.17642 -14.08685 -13.68238 -13.62773 -13.53592 -13.25145 -13.03318 -12.47021 -12.16508 -12.00202 -11.72114 -11.46690 -11.32123 -10.87277 -10.86127 -10.62927 -10.61539 -10.50467 -10.44318 -10.10240 -9.99697 -9.89968 -9.23991 -9.02462 -8.93774 -8.53800 -7.07418 -6.11955 -3.12666 1.30096 1.72559 2.45843 2.61095 2.77180 3.04110 3.50001 3.53357 3.61540 3.71106 4.28821 4.36255 4.55950 4.63754 4.71125 4.81493 4.90678 5.05784 5.09078 5.16046 5.24453 5.25672 5.40294 5.49354 5.60418 5.72385 5.80360 5.92246 6.04056 6.11491 6.25561 6.32984 6.37358 6.37668 6.42462 6.65102 6.66615 6.79439 6.94208 6.99598 7.37106 7.77526 7.77752 8.06968 8.73530 9.20021 10.06535 10.21565 11.36261 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.023703 B = 0.002780 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.013445 B =10069.158706 C =10206.311726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.149 3.851 3 H 0.073 0.927 4 C -0.136 4.136 5 C 0.185 3.815 6 H 0.049 0.951 7 N -0.735 5.735 8 C -0.332 4.332 9 H 0.065 0.935 10 C -0.045 4.045 11 N -0.943 5.943 12 Si 1.079 2.921 13 H -0.285 1.285 14 H -0.295 1.295 15 H -0.295 1.295 16 C -0.152 4.152 17 C 0.105 3.895 18 N -0.598 5.598 19 C 0.505 3.495 20 O -0.530 6.530 21 C 0.097 3.903 22 N -0.560 5.560 23 C 0.526 3.474 24 O -0.468 6.468 25 C 0.066 3.934 26 N -0.729 5.729 27 C 0.706 3.294 28 O -0.536 6.536 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.367 0.633 35 H 0.255 0.745 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.598 2.154 23.678 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.046 3.954 3 H 0.091 0.909 4 C -0.175 4.175 5 C 0.074 3.926 6 H 0.067 0.933 7 N -0.377 5.377 8 C -0.463 4.463 9 H 0.083 0.917 10 C -0.242 4.242 11 N -0.588 5.588 12 Si 0.910 3.090 13 H -0.211 1.211 14 H -0.223 1.223 15 H -0.223 1.223 16 C -0.193 4.193 17 C -0.018 4.018 18 N -0.332 5.332 19 C 0.291 3.709 20 O -0.408 6.408 21 C -0.028 4.028 22 N -0.306 5.306 23 C 0.313 3.687 24 O -0.337 6.337 25 C -0.061 4.061 26 N -0.394 5.394 27 C 0.407 3.593 28 O -0.408 6.408 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.200 0.800 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -10.478 2.233 22.214 24.663 hybrid contribution -1.421 -0.137 1.096 1.800 sum -11.899 2.096 23.310 26.255 Atomic orbital electron populations 1.22181 0.92868 1.03409 1.00855 1.21318 0.95429 0.95146 0.83472 0.90883 1.22322 0.97626 1.00950 0.96626 1.20090 0.90705 0.94998 0.86781 0.93258 1.42441 1.13101 1.54649 1.27475 1.20018 0.89629 1.26320 1.10352 0.91743 1.25771 1.06264 0.97559 0.94647 1.70876 1.08203 1.38271 1.41458 0.83251 0.74127 0.75468 0.76138 1.21056 1.22270 1.22271 1.22677 1.01953 1.00000 0.94677 1.21925 0.79328 1.00904 0.99655 1.48170 1.07613 1.57329 1.20061 1.20554 0.86507 0.80316 0.83547 1.90746 1.17028 1.56481 1.76530 1.21609 0.87651 1.02813 0.90730 1.45838 1.31920 1.23649 1.29216 1.20887 0.84351 0.83715 0.79733 1.90832 1.57908 1.19992 1.64982 1.22434 0.98794 0.87692 0.97221 1.45349 1.35594 1.26817 1.31635 1.15774 0.79817 0.81521 0.82219 1.91057 1.72299 1.41170 1.36286 0.90716 0.93626 0.91922 0.90610 0.91833 0.79992 0.93327 0.92120 0.90353 0.90595 0.90841 0.85477 0.85832 0.85768 0.85839 0.71366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 7.61 37.16 0.28 -1.72 16 2 C 0.15 2.19 3.49 -67.60 -0.24 1.95 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -2.28 4.84 -26.61 -0.13 -2.41 16 5 C 0.18 3.52 2.73 -67.89 -0.19 3.33 16 6 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 7 N -0.74 -17.99 5.12 -53.39 -0.27 -18.27 16 8 C -0.33 -9.11 9.93 -15.06 -0.15 -9.26 16 9 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 10 C -0.04 -1.28 5.50 -17.43 -0.10 -1.38 16 11 N -0.94 -29.10 13.70 55.49 0.76 -28.34 16 12 Si 1.08 25.63 29.92 -169.99 -5.09 20.55 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.30 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 16 C -0.15 -2.49 5.66 -26.61 -0.15 -2.64 16 17 C 0.11 1.29 6.35 -3.71 -0.02 1.27 16 18 N -0.60 -8.24 2.97 -165.22 -0.49 -8.73 16 19 C 0.50 7.12 7.57 -10.99 -0.08 7.03 16 20 O -0.53 -8.75 12.00 5.55 0.07 -8.68 16 21 C 0.10 1.07 4.54 -5.19 -0.02 1.04 16 22 N -0.56 -6.10 2.09 -122.02 -0.26 -6.36 16 23 C 0.53 4.98 8.32 -10.55 -0.09 4.90 16 24 O -0.47 -5.69 17.76 5.59 0.10 -5.59 16 25 C 0.07 0.31 7.97 -4.31 -0.03 0.28 16 26 N -0.73 -4.72 6.58 -65.73 -0.43 -5.16 16 27 C 0.71 8.03 8.62 -88.02 -0.76 7.27 16 28 O -0.54 -8.28 17.48 5.33 0.09 -8.19 16 29 H 0.07 1.15 6.54 -51.93 -0.34 0.81 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 1.04 6.96 -51.92 -0.36 0.68 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.37 9.45 6.63 -40.82 -0.27 9.17 16 35 H 0.26 7.79 6.77 -40.82 -0.28 7.51 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.08 0.72 5.93 -51.93 -0.31 0.41 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.13 1.32 7.64 -51.93 -0.40 0.92 16 41 H 0.12 1.07 7.56 -51.93 -0.39 0.68 16 42 H 0.12 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.12 0.20 8.14 -51.93 -0.42 -0.23 16 44 H 0.44 1.73 8.96 -40.82 -0.37 1.36 16 LS Contribution 358.25 15.07 5.40 5.40 Total: -1.00 -37.37 358.25 -7.94 -45.30 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.14 Total: 8.40 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: -1.67 Total: 9.66 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: -0.69 Total: -66.85 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.26 Total: -22.45 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.09 Total: 20.55 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.37 -7.94 -45.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044849319.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.754 kcal (2) G-P(sol) polarization free energy of solvation -37.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds