Wall clock time and date at job start Fri Apr 10 2020 18:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.58732 * 2 1 4 4 C 1.53195 * 109.58376 * 239.57357 * 2 1 3 5 5 C 1.53042 * 109.31222 * 185.57415 * 4 2 1 6 6 H 1.08996 * 109.44931 * 301.35498 * 5 4 2 7 7 N 1.46494 * 109.45924 * 181.38955 * 5 4 2 8 8 C 1.36938 * 120.00181 * 154.93956 * 7 5 4 9 9 H 1.08002 * 119.99752 * 359.97438 * 8 7 5 10 10 C 1.38805 * 120.00349 * 180.02562 * 8 7 5 11 11 N 1.31623 * 119.99925 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00278 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47585 * 179.97438 * 12 10 8 14 14 H 1.48500 * 109.47391 * 59.99214 * 12 10 8 15 15 H 1.48506 * 109.46814 * 299.99699 * 12 10 8 16 16 C 1.53046 * 109.53409 * 61.37089 * 5 4 2 17 17 C 1.53191 * 109.31079 * 298.63432 * 16 5 4 18 18 N 1.46924 * 108.77675 * 54.63721 * 17 16 5 19 19 C 1.34775 * 120.63186 * 126.41324 * 18 17 16 20 20 O 1.21283 * 120.00199 * 174.20629 * 19 18 17 21 21 C 1.50702 * 119.99910 * 354.21337 * 19 18 17 22 22 N 1.46497 * 109.47298 * 180.02562 * 21 19 18 23 23 C 1.34768 * 124.17669 * 269.72433 * 22 21 19 24 24 O 1.21237 * 127.15764 * 0.02562 * 23 22 21 25 25 C 1.51585 * 105.68617 * 179.97438 * 23 22 21 26 26 N 1.47313 * 103.59120 * 0.32019 * 25 23 22 27 27 C 1.33793 * 124.17779 * 90.01979 * 22 21 19 28 28 O 1.21536 * 123.77309 * 359.96638 * 27 22 21 29 29 H 1.09000 * 109.46790 * 305.50875 * 1 2 3 30 30 H 1.08997 * 109.47483 * 65.51373 * 1 2 3 31 31 H 1.09007 * 109.47247 * 185.51156 * 1 2 3 32 32 H 1.09004 * 109.49241 * 65.62826 * 4 2 1 33 33 H 1.08992 * 109.50189 * 305.53350 * 4 2 1 34 34 H 0.97005 * 120.00126 * 334.93315 * 7 5 4 35 35 H 0.96993 * 120.00175 * 0.02562 * 11 10 8 36 36 H 1.08999 * 109.49785 * 58.58110 * 16 5 4 37 37 H 1.08997 * 109.49212 * 178.64885 * 16 5 4 38 38 H 1.09004 * 109.58770 * 174.42581 * 17 16 5 39 39 H 1.09000 * 109.58631 * 294.70564 * 17 16 5 40 40 H 1.09005 * 109.46661 * 299.99760 * 21 19 18 41 41 H 1.09002 * 109.47656 * 59.99837 * 21 19 18 42 42 H 1.08998 * 110.76635 * 241.71383 * 25 23 22 43 43 H 1.09004 * 110.56524 * 118.82658 * 25 23 22 44 44 H 0.97002 * 126.68923 * 179.77283 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2446 5 6 3.5675 -0.8494 -1.1692 6 1 4.0059 0.1461 -1.0995 7 7 4.0651 -1.5186 -2.3737 8 6 5.3492 -1.3011 -2.7968 9 1 5.9949 -0.6359 -2.2428 10 6 5.8205 -1.9347 -3.9383 11 7 5.0334 -2.7450 -4.6138 12 14 7.5719 -1.6374 -4.5159 13 1 7.8274 -2.4257 -5.7482 14 1 8.5214 -2.0577 -3.4543 15 1 7.7596 -0.1928 -4.8041 16 6 3.9569 -1.6657 0.0654 17 6 3.4650 -0.9455 1.3248 18 7 2.0225 -0.6982 1.1953 19 6 1.1675 -1.1037 2.1549 20 8 -0.0055 -0.8026 2.0886 21 6 1.6689 -1.9311 3.3103 22 7 0.5541 -2.2417 4.2086 23 6 0.1872 -1.4738 5.2535 24 8 0.6977 -0.4347 5.6136 25 6 -0.9974 -2.1787 5.8842 26 7 -1.1722 -3.3782 5.0472 27 6 -0.2219 -3.3258 4.0964 28 8 -0.0828 -4.1698 3.2330 29 1 -0.3633 0.5969 0.8366 30 1 -0.3634 0.4259 -0.9352 31 1 -0.3634 -1.0230 0.0987 32 1 1.7659 -0.1694 -2.1366 33 1 1.6029 -1.7268 -1.2893 34 1 3.4850 -2.1158 -2.8714 35 1 4.1239 -2.8991 -4.3142 36 1 3.4982 -2.6529 0.0084 37 1 5.0411 -1.7700 0.1053 38 1 3.6518 -1.5692 2.1990 39 1 3.9921 0.0025 1.4329 40 1 2.1002 -2.8583 2.9330 41 1 2.4296 -1.3717 3.8548 42 1 -1.8871 -1.5502 5.8444 43 1 -0.7727 -2.4587 6.9134 44 1 -1.8421 -4.0707 5.1595 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044849319.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:33 Heat of formation + Delta-G solvation = -69.587445 kcal Electronic energy + Delta-G solvation = -28516.796812 eV Core-core repulsion = 24470.125770 eV Total energy + Delta-G solvation = -4046.671043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.43794 -41.55892 -39.70178 -38.91199 -37.24115 -36.50890 -35.85277 -34.12145 -33.74801 -30.97252 -29.71156 -28.53918 -28.17530 -25.87803 -24.65379 -24.02579 -23.57664 -22.09509 -21.49746 -20.27158 -19.34165 -19.10190 -18.58680 -17.89197 -17.52995 -17.29094 -16.88665 -16.62891 -16.30143 -16.14386 -15.86416 -15.38396 -15.32304 -15.18693 -15.04881 -14.83552 -14.71447 -14.41748 -14.05287 -13.60498 -13.43760 -13.27229 -13.14881 -12.79976 -12.63894 -12.45132 -12.21644 -12.12382 -12.01152 -11.87937 -11.67765 -11.43600 -11.39381 -11.18145 -10.89228 -10.49350 -10.16064 -9.72686 -9.12767 -8.37263 -5.31898 0.58973 0.97786 1.38408 1.59290 1.69309 1.72126 1.85145 2.05330 2.26760 2.72560 3.01507 3.28083 3.41399 3.56288 3.69566 3.73856 3.89923 3.97747 4.06004 4.12852 4.21670 4.25676 4.28112 4.30835 4.46452 4.50568 4.56815 4.63674 4.67208 4.72000 4.90005 4.94975 5.03778 5.14451 5.29402 5.41740 5.56978 5.61930 5.79591 5.95582 6.24874 6.33687 6.49775 6.95343 7.05762 7.09603 7.99320 8.12881 9.14443 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.023703 B = 0.002780 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.013445 B =10069.158706 C =10206.311726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.153 3.847 3 H 0.089 0.911 4 C -0.124 4.124 5 C 0.178 3.822 6 H 0.050 0.950 7 N -0.751 5.751 8 C -0.324 4.324 9 H 0.072 0.928 10 C -0.109 4.109 11 N -0.980 5.980 12 Si 1.127 2.873 13 H -0.297 1.297 14 H -0.275 1.275 15 H -0.277 1.277 16 C -0.142 4.142 17 C 0.112 3.888 18 N -0.600 5.600 19 C 0.499 3.501 20 O -0.558 6.558 21 C 0.095 3.905 22 N -0.567 5.567 23 C 0.518 3.482 24 O -0.498 6.498 25 C 0.077 3.923 26 N -0.708 5.708 27 C 0.697 3.303 28 O -0.588 6.588 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.356 0.644 35 H 0.242 0.758 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.132 0.868 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.168 0.832 44 H 0.455 0.545 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.470 3.237 26.681 29.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 H 0.107 0.893 4 C -0.163 4.163 5 C 0.070 3.930 6 H 0.068 0.932 7 N -0.392 5.392 8 C -0.455 4.455 9 H 0.090 0.910 10 C -0.300 4.300 11 N -0.628 5.628 12 Si 0.952 3.048 13 H -0.224 1.224 14 H -0.201 1.201 15 H -0.203 1.203 16 C -0.182 4.182 17 C -0.010 4.010 18 N -0.334 5.334 19 C 0.286 3.714 20 O -0.437 6.437 21 C -0.030 4.030 22 N -0.313 5.313 23 C 0.308 3.692 24 O -0.370 6.370 25 C -0.049 4.049 26 N -0.373 5.373 27 C 0.398 3.602 28 O -0.465 6.465 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.187 0.813 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.129 0.871 39 H 0.112 0.888 40 H 0.149 0.851 41 H 0.168 0.832 42 H 0.170 0.830 43 H 0.185 0.815 44 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -10.393 3.348 25.328 27.582 hybrid contribution -1.553 -0.428 0.243 1.629 sum -11.946 2.920 25.571 28.374 Atomic orbital electron populations 1.22008 0.92858 1.01881 1.01191 1.21239 0.95308 0.95598 0.82886 0.89321 1.22159 0.95976 1.00295 0.97835 1.20355 0.91929 0.94776 0.85958 0.93235 1.42695 1.12307 1.54945 1.29229 1.20379 0.90647 1.24848 1.09647 0.91011 1.27195 1.09504 0.97702 0.95551 1.70993 1.08103 1.40810 1.42902 0.82634 0.70419 0.76100 0.75636 1.22386 1.20120 1.20332 1.22444 1.01275 0.99132 0.95385 1.21988 0.78368 1.02072 0.98596 1.48222 1.08255 1.57170 1.19718 1.21114 0.86143 0.79988 0.84118 1.90726 1.18186 1.57461 1.77357 1.21679 0.88460 1.02686 0.90153 1.45988 1.31892 1.23875 1.29500 1.21658 0.85081 0.83256 0.79170 1.90818 1.59189 1.21273 1.65708 1.22735 0.97552 0.86518 0.98123 1.45339 1.34198 1.27495 1.30266 1.16036 0.80563 0.81120 0.82495 1.91020 1.73876 1.42956 1.38615 0.91098 0.92596 0.94206 0.91213 0.93479 0.81299 0.94752 0.93750 0.91238 0.87065 0.88812 0.85052 0.83172 0.83040 0.81503 0.69810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.58 7.61 71.98 0.55 -3.03 16 2 C 0.15 4.36 3.49 44.98 0.16 4.51 16 3 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 4 C -0.12 -4.18 4.84 30.67 0.15 -4.04 16 5 C 0.18 6.78 2.73 45.02 0.12 6.90 16 6 H 0.05 1.89 8.08 -2.39 -0.02 1.88 16 7 N -0.75 -37.50 5.12 -322.82 -1.65 -39.15 16 8 C -0.32 -17.83 9.93 84.03 0.83 -16.99 16 9 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 10 C -0.11 -6.30 5.50 84.86 0.47 -5.84 16 11 N -0.98 -62.10 13.70 21.65 0.30 -61.80 16 12 Si 1.13 51.60 29.92 68.60 2.05 53.66 16 13 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 14 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 15 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 16 C -0.14 -4.54 5.66 30.67 0.17 -4.36 16 17 C 0.11 2.50 6.35 86.36 0.55 3.05 16 18 N -0.60 -15.73 2.97 -795.02 -2.36 -18.09 16 19 C 0.50 13.54 7.57 87.66 0.66 14.20 16 20 O -0.56 -18.16 12.00 -3.04 -0.04 -18.20 16 21 C 0.10 1.95 4.54 85.63 0.39 2.34 16 22 N -0.57 -11.47 2.09 -777.20 -1.63 -13.09 16 23 C 0.52 8.58 8.32 87.94 0.73 9.31 16 24 O -0.50 -11.08 17.76 -2.90 -0.05 -11.13 16 25 C 0.08 0.43 7.97 85.76 0.68 1.11 16 26 N -0.71 -7.35 6.58 -480.30 -3.16 -10.51 16 27 C 0.70 15.07 8.62 179.44 1.55 16.61 16 28 O -0.59 -18.31 17.48 -3.83 -0.07 -18.38 16 29 H 0.07 2.15 6.54 -2.39 -0.02 2.13 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 1.34 6.96 -2.38 -0.02 1.32 16 32 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.36 19.10 6.63 -92.70 -0.61 18.48 16 35 H 0.24 15.40 6.77 -92.71 -0.63 14.77 16 36 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.11 1.75 5.93 -2.39 -0.01 1.74 16 39 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.13 2.58 7.64 -2.38 -0.02 2.56 16 41 H 0.15 2.19 7.56 -2.39 -0.02 2.17 16 42 H 0.15 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.17 -0.35 8.14 -2.39 -0.02 -0.37 16 44 H 0.45 2.37 8.96 -92.71 -0.83 1.54 16 Total: -1.00 -84.70 358.25 0.15 -84.55 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: -0.25 Total: 28.36 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: 7.01 Total: 23.79 kcal Atomic # 7 Polarization: -134.14 SS G_CDS: -8.51 Total: -142.65 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -0.15 Total: -47.71 kcal Atomic # 14 Polarization: 51.60 SS G_CDS: 2.05 Total: 53.66 kcal Total: -84.70 0.15 -84.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044849319.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.964 kcal (2) G-P(sol) polarization free energy of solvation -84.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds