Wall clock time and date at job start Fri Apr 10 2020 18:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.58387 * 2 1 4 4 C 1.53192 * 109.58684 * 120.28499 * 2 1 3 5 5 C 1.53073 * 109.29318 * 174.28060 * 4 2 1 6 6 C 1.53037 * 109.65693 * 298.84160 * 5 4 2 7 7 H 1.08994 * 109.50354 * 301.35087 * 6 5 4 8 8 N 1.46506 * 109.49663 * 181.25428 * 6 5 4 9 9 C 1.34769 * 120.00026 * 155.16665 * 8 6 5 10 10 O 1.21284 * 120.00219 * 0.02562 * 9 8 6 11 11 C 1.50703 * 120.00094 * 180.02562 * 9 8 6 12 12 N 1.46499 * 109.47348 * 180.02562 * 11 9 8 13 13 C 1.47312 * 126.68606 * 269.71073 * 12 11 9 14 14 C 1.51587 * 103.59252 * 179.97438 * 13 12 11 15 15 O 1.21230 * 127.16011 * 180.02562 * 14 13 12 16 16 N 1.34765 * 105.68273 * 0.33067 * 14 13 12 17 17 C 1.33788 * 111.64568 * 359.78435 * 16 14 13 18 18 O 1.21540 * 123.77163 * 180.02562 * 17 16 14 19 19 C 1.53195 * 109.31271 * 61.30621 * 6 5 4 20 20 N 1.46924 * 109.58386 * 239.71742 * 2 1 3 21 21 C 1.36934 * 120.63517 * 6.58657 * 20 2 1 22 22 H 1.08000 * 119.99532 * 330.16059 * 21 20 2 23 23 C 1.38812 * 120.00489 * 150.16798 * 21 20 2 24 24 N 1.31625 * 119.99667 * 344.49199 * 23 21 20 25 25 Si 1.86795 * 120.00181 * 164.49810 * 23 21 20 26 26 H 1.48499 * 109.47246 * 359.97438 * 25 23 21 27 27 H 1.48509 * 109.47175 * 119.99847 * 25 23 21 28 28 H 1.48502 * 109.47056 * 239.99360 * 25 23 21 29 29 H 1.08998 * 109.47102 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47008 * 59.99863 * 1 2 3 31 31 H 1.08995 * 109.47070 * 300.00181 * 1 2 3 32 32 H 1.09004 * 109.49288 * 294.37375 * 4 2 1 33 33 H 1.08997 * 109.49545 * 54.46718 * 4 2 1 34 34 H 1.09006 * 109.45002 * 178.75750 * 5 4 2 35 35 H 1.08999 * 109.33812 * 58.86691 * 5 4 2 36 36 H 0.97003 * 119.99933 * 335.16384 * 8 6 5 37 37 H 1.09004 * 109.46683 * 299.99650 * 11 9 8 38 38 H 1.08996 * 109.46874 * 59.99517 * 11 9 8 39 39 H 1.08999 * 110.59941 * 298.56208 * 13 12 11 40 40 H 1.09005 * 110.60167 * 61.51073 * 13 12 11 41 41 H 0.97002 * 124.17923 * 179.74377 * 16 14 13 42 42 H 1.09003 * 109.58778 * 185.57305 * 19 6 5 43 43 H 1.09003 * 109.70191 * 65.21716 * 19 6 5 44 44 H 0.96999 * 119.99631 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5675 -0.8494 1.1690 6 6 3.9569 -1.6657 -0.0656 7 1 3.4983 -2.6528 -0.0086 8 7 5.4142 -1.8052 -0.1198 9 6 5.9677 -2.8454 -0.7741 10 8 5.2593 -3.6657 -1.3184 11 6 7.4668 -2.9893 -0.8294 12 7 7.8143 -4.1904 -1.5928 13 6 8.0042 -5.5494 -1.0570 14 6 8.3438 -6.3719 -2.2842 15 8 8.5833 -7.5596 -2.3265 16 7 8.3309 -5.5069 -3.3175 17 6 8.0289 -4.2661 -2.9186 18 8 7.9561 -3.3137 -3.6702 19 6 3.4650 -0.9453 -1.3250 20 7 2.0225 -0.6980 -1.1954 21 6 1.1536 -1.1107 -2.1700 22 1 0.1398 -1.3784 -1.9114 23 6 1.5759 -1.1850 -3.4903 24 7 2.6864 -0.5833 -3.8608 25 14 0.5681 -2.1386 -4.7410 26 1 -0.6265 -2.7180 -4.0759 27 1 0.1353 -1.2246 -5.8285 28 1 1.3948 -3.2317 -5.3128 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8899 32 1 1.7660 -0.1641 2.1370 33 1 1.6029 -1.7237 1.2934 34 1 3.9378 -1.3475 2.0652 35 1 4.0060 0.1460 1.0994 36 1 5.9808 -1.1489 0.3152 37 1 7.8982 -2.1136 -1.3143 38 1 7.8611 -3.0751 0.1832 39 1 8.8266 -5.5683 -0.3419 40 1 7.0854 -5.9118 -0.5959 41 1 8.5181 -5.7533 -4.2369 42 1 3.6518 -1.5690 -2.1992 43 1 3.9901 0.0037 -1.4342 44 1 2.9817 -0.6355 -4.7833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071904204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:54 Heat of formation + Delta-G solvation = -49.432724 kcal Electronic energy + Delta-G solvation = -28504.960364 eV Core-core repulsion = 24459.163295 eV Total energy + Delta-G solvation = -4045.797068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.35223 -39.58199 -38.70161 -37.63688 -36.23741 -34.67617 -34.33273 -32.81126 -31.03722 -29.90420 -29.28263 -27.16795 -25.81448 -24.86890 -22.56085 -22.33528 -21.92667 -20.60301 -20.06765 -19.24484 -18.36355 -17.61632 -16.83172 -16.46890 -16.46364 -15.94532 -15.74656 -15.28960 -14.69320 -14.58539 -14.31440 -14.16838 -13.93460 -13.79727 -13.68642 -13.36574 -13.18060 -12.81535 -12.40433 -12.23526 -11.87990 -11.44903 -11.16211 -11.12017 -10.87842 -10.70569 -10.56133 -10.49308 -10.44340 -10.39306 -10.24847 -10.05900 -9.93577 -9.65953 -9.45724 -8.97324 -8.58797 -8.39965 -6.58973 -5.71677 -3.16889 1.43762 1.97270 2.78493 2.87151 2.91645 3.43453 3.51292 3.52814 3.53549 3.85442 4.51140 4.55383 4.71512 4.86624 4.98967 5.05245 5.32404 5.36217 5.45404 5.50597 5.57012 5.65445 5.84736 5.95059 6.07377 6.08235 6.25967 6.28849 6.38302 6.44048 6.48088 6.61468 6.71760 6.85272 6.88906 7.04810 7.12877 7.16815 7.31441 7.75263 7.80554 7.89938 7.99463 8.50667 8.54669 9.26891 9.91108 10.46272 11.36411 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012928 B = 0.003922 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.370737 B = 7138.167709 C = 8508.832574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.115 4.115 6 C 0.118 3.882 7 H 0.081 0.919 8 N -0.717 5.717 9 C 0.487 3.513 10 O -0.522 6.522 11 C 0.134 3.866 12 N -0.608 5.608 13 C 0.065 3.935 14 C 0.530 3.470 15 O -0.477 6.477 16 N -0.678 5.678 17 C 0.705 3.295 18 O -0.530 6.530 19 C 0.168 3.832 20 N -0.583 5.583 21 C -0.256 4.256 22 H 0.070 0.930 23 C 0.008 3.992 24 N -0.897 5.897 25 Si 0.898 3.102 26 H -0.277 1.277 27 H -0.290 1.290 28 H -0.289 1.289 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.393 0.607 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.432 0.568 42 H 0.092 0.908 43 H 0.017 0.983 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.755 -4.329 12.237 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.153 4.153 6 C 0.013 3.987 7 H 0.099 0.901 8 N -0.369 5.369 9 C 0.270 3.730 10 O -0.397 6.397 11 C 0.009 3.991 12 N -0.347 5.347 13 C -0.061 4.061 14 C 0.317 3.683 15 O -0.348 6.348 16 N -0.348 5.348 17 C 0.406 3.594 18 O -0.402 6.402 19 C 0.041 3.959 20 N -0.307 5.307 21 C -0.385 4.385 22 H 0.088 0.912 23 C -0.191 4.191 24 N -0.541 5.541 25 Si 0.728 3.272 26 H -0.202 1.202 27 H -0.217 1.217 28 H -0.216 1.216 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.226 0.774 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.274 0.726 42 H 0.110 0.890 43 H 0.035 0.965 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.308 -4.906 11.398 17.477 hybrid contribution -0.121 -0.235 -0.964 0.999 sum 12.187 -5.141 10.434 16.847 Atomic orbital electron populations 1.21801 0.96019 1.01387 1.00187 1.20482 0.93078 0.93548 0.87062 0.95801 1.22052 0.94309 1.01297 0.98952 1.21675 0.97445 0.99648 0.96573 1.21993 0.77579 1.00853 0.98322 0.90090 1.46037 1.08779 1.26726 1.55345 1.20949 0.90558 0.82203 0.79285 1.90772 1.63031 1.42231 1.43625 1.21179 0.93631 0.86843 0.97492 1.46892 1.72398 1.08706 1.06669 1.22521 1.05634 0.81567 0.96403 1.20782 0.74687 0.86552 0.86311 1.90847 1.46080 1.12582 1.85270 1.44304 1.66846 1.10137 1.13508 1.15767 0.77688 0.82849 0.83106 1.91078 1.55523 1.37585 1.56020 1.21061 0.83614 0.96893 0.94303 1.44020 1.02619 1.64843 1.19200 1.19150 0.95098 1.38333 0.85945 0.91227 1.25089 0.97748 0.99215 0.97072 1.69998 1.23965 1.43412 1.16725 0.86295 0.79599 0.79742 0.81558 1.20214 1.21734 1.21560 0.92825 0.91991 0.94368 0.92645 0.92143 0.93105 0.92246 0.77374 0.86194 0.86591 0.85830 0.85645 0.72552 0.88959 0.96458 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.95 37.16 0.30 -2.25 16 2 C 0.16 3.33 3.49 -67.60 -0.24 3.09 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.07 5.38 -26.59 -0.14 -2.21 16 5 C -0.12 -1.73 5.35 -26.67 -0.14 -1.87 16 6 C 0.12 2.16 2.61 -67.81 -0.18 1.98 16 7 H 0.08 1.72 7.58 -51.93 -0.39 1.32 16 8 N -0.72 -10.22 5.08 -53.69 -0.27 -10.49 16 9 C 0.49 7.42 7.86 -10.99 -0.09 7.34 16 10 O -0.52 -10.82 16.10 5.55 0.09 -10.73 16 11 C 0.13 1.31 6.63 -5.19 -0.03 1.28 16 12 N -0.61 -6.80 2.51 -181.39 -0.45 -7.25 16 13 C 0.06 0.53 7.66 -4.31 -0.03 0.49 16 14 C 0.53 5.58 8.81 -10.55 -0.09 5.49 16 15 O -0.48 -6.17 18.02 5.60 0.10 -6.07 16 16 N -0.68 -7.56 5.70 -15.79 -0.09 -7.65 16 17 C 0.71 9.89 8.68 -88.02 -0.76 9.12 16 18 O -0.53 -9.75 17.71 5.33 0.09 -9.65 16 19 C 0.17 4.03 4.86 -3.71 -0.02 4.01 16 20 N -0.58 -14.47 2.99 -164.77 -0.49 -14.97 16 21 C -0.26 -7.05 8.57 -15.06 -0.13 -7.18 16 22 H 0.07 1.87 6.23 -52.49 -0.33 1.55 16 23 C 0.01 0.23 4.94 -17.43 -0.09 0.15 16 24 N -0.90 -27.15 11.23 55.49 0.62 -26.52 16 25 Si 0.90 22.84 29.58 -169.99 -5.03 17.81 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 29 H 0.05 1.02 7.42 -51.93 -0.39 0.64 16 30 H 0.06 1.26 7.64 -51.93 -0.40 0.86 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.39 3.98 8.60 -40.82 -0.35 3.63 16 37 H 0.12 1.12 8.03 -51.93 -0.42 0.70 16 38 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.43 4.05 8.96 -40.82 -0.37 3.69 16 42 H 0.09 2.67 6.15 -51.93 -0.32 2.35 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 363.39 15.07 5.48 5.48 Total: -1.00 -38.62 363.39 -7.92 -46.54 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.32 Total: 4.07 kcal Atomic # 6 Polarization: 21.09 SS G_CDS: -1.65 Total: 19.44 kcal Atomic # 7 Polarization: -66.19 SS G_CDS: -0.69 Total: -66.88 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: 0.28 Total: -26.46 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.03 Total: 17.81 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -38.62 -7.92 -46.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071904204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.893 kcal (2) G-P(sol) polarization free energy of solvation -38.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds