Wall clock time and date at job start Fri Apr 10 2020 18:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.58387 * 2 1 4 4 C 1.53192 * 109.58684 * 120.28499 * 2 1 3 5 5 C 1.53073 * 109.29318 * 174.28060 * 4 2 1 6 6 C 1.53037 * 109.65693 * 298.84160 * 5 4 2 7 7 H 1.08994 * 109.50354 * 301.35087 * 6 5 4 8 8 N 1.46506 * 109.49663 * 181.25428 * 6 5 4 9 9 C 1.34769 * 120.00026 * 155.16665 * 8 6 5 10 10 O 1.21284 * 120.00219 * 0.02562 * 9 8 6 11 11 C 1.50703 * 120.00094 * 180.02562 * 9 8 6 12 12 N 1.46499 * 109.47348 * 180.02562 * 11 9 8 13 13 C 1.47312 * 126.68606 * 269.71073 * 12 11 9 14 14 C 1.51587 * 103.59252 * 179.97438 * 13 12 11 15 15 O 1.21230 * 127.16011 * 180.02562 * 14 13 12 16 16 N 1.34765 * 105.68273 * 0.33067 * 14 13 12 17 17 C 1.33788 * 111.64568 * 359.78435 * 16 14 13 18 18 O 1.21540 * 123.77163 * 180.02562 * 17 16 14 19 19 C 1.53195 * 109.31271 * 61.30621 * 6 5 4 20 20 N 1.46924 * 109.58386 * 239.71742 * 2 1 3 21 21 C 1.36934 * 120.63517 * 6.58657 * 20 2 1 22 22 H 1.08000 * 119.99532 * 330.16059 * 21 20 2 23 23 C 1.38812 * 120.00489 * 150.16798 * 21 20 2 24 24 N 1.31625 * 119.99667 * 344.49199 * 23 21 20 25 25 Si 1.86795 * 120.00181 * 164.49810 * 23 21 20 26 26 H 1.48499 * 109.47246 * 359.97438 * 25 23 21 27 27 H 1.48509 * 109.47175 * 119.99847 * 25 23 21 28 28 H 1.48502 * 109.47056 * 239.99360 * 25 23 21 29 29 H 1.08998 * 109.47102 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47008 * 59.99863 * 1 2 3 31 31 H 1.08995 * 109.47070 * 300.00181 * 1 2 3 32 32 H 1.09004 * 109.49288 * 294.37375 * 4 2 1 33 33 H 1.08997 * 109.49545 * 54.46718 * 4 2 1 34 34 H 1.09006 * 109.45002 * 178.75750 * 5 4 2 35 35 H 1.08999 * 109.33812 * 58.86691 * 5 4 2 36 36 H 0.97003 * 119.99933 * 335.16384 * 8 6 5 37 37 H 1.09004 * 109.46683 * 299.99650 * 11 9 8 38 38 H 1.08996 * 109.46874 * 59.99517 * 11 9 8 39 39 H 1.08999 * 110.59941 * 298.56208 * 13 12 11 40 40 H 1.09005 * 110.60167 * 61.51073 * 13 12 11 41 41 H 0.97002 * 124.17923 * 179.74377 * 16 14 13 42 42 H 1.09003 * 109.58778 * 185.57305 * 19 6 5 43 43 H 1.09003 * 109.70191 * 65.21716 * 19 6 5 44 44 H 0.96999 * 119.99631 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5675 -0.8494 1.1690 6 6 3.9569 -1.6657 -0.0656 7 1 3.4983 -2.6528 -0.0086 8 7 5.4142 -1.8052 -0.1198 9 6 5.9677 -2.8454 -0.7741 10 8 5.2593 -3.6657 -1.3184 11 6 7.4668 -2.9893 -0.8294 12 7 7.8143 -4.1904 -1.5928 13 6 8.0042 -5.5494 -1.0570 14 6 8.3438 -6.3719 -2.2842 15 8 8.5833 -7.5596 -2.3265 16 7 8.3309 -5.5069 -3.3175 17 6 8.0289 -4.2661 -2.9186 18 8 7.9561 -3.3137 -3.6702 19 6 3.4650 -0.9453 -1.3250 20 7 2.0225 -0.6980 -1.1954 21 6 1.1536 -1.1107 -2.1700 22 1 0.1398 -1.3784 -1.9114 23 6 1.5759 -1.1850 -3.4903 24 7 2.6864 -0.5833 -3.8608 25 14 0.5681 -2.1386 -4.7410 26 1 -0.6265 -2.7180 -4.0759 27 1 0.1353 -1.2246 -5.8285 28 1 1.3948 -3.2317 -5.3128 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8899 32 1 1.7660 -0.1641 2.1370 33 1 1.6029 -1.7237 1.2934 34 1 3.9378 -1.3475 2.0652 35 1 4.0060 0.1460 1.0994 36 1 5.9808 -1.1489 0.3152 37 1 7.8982 -2.1136 -1.3143 38 1 7.8611 -3.0751 0.1832 39 1 8.8266 -5.5683 -0.3419 40 1 7.0854 -5.9118 -0.5959 41 1 8.5181 -5.7533 -4.2369 42 1 3.6518 -1.5690 -2.1992 43 1 3.9901 0.0037 -1.4342 44 1 2.9817 -0.6355 -4.7833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071904204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:53 Heat of formation + Delta-G solvation = -81.656676 kcal Electronic energy + Delta-G solvation = -28506.357699 eV Core-core repulsion = 24459.163295 eV Total energy + Delta-G solvation = -4047.194404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.28804 -40.87544 -39.76044 -39.17020 -37.32868 -36.00832 -35.46116 -34.65493 -32.42300 -31.75976 -30.24621 -28.19497 -27.52064 -26.51559 -24.06425 -23.44958 -23.02552 -22.00614 -21.37404 -20.80400 -19.31931 -18.63805 -18.33171 -17.83189 -17.52410 -17.29947 -16.87727 -16.83760 -15.98663 -15.83154 -15.66449 -15.44887 -15.28467 -15.12147 -14.99339 -14.82940 -14.45875 -14.11165 -14.00050 -13.50150 -13.19676 -13.05681 -12.76583 -12.72294 -12.55729 -12.28291 -12.19921 -12.11926 -11.96571 -11.65395 -11.52901 -11.46933 -11.41715 -11.16557 -11.09141 -10.57130 -10.06628 -9.97356 -8.62844 -7.87871 -5.34015 0.53576 1.09059 1.35400 1.39976 1.47922 1.67908 1.88471 1.99939 2.39258 2.49434 3.03273 3.28936 3.63824 3.77511 3.86492 4.03430 4.13151 4.26018 4.30307 4.33816 4.38756 4.41717 4.64237 4.69712 4.73273 4.82910 4.92284 4.99328 5.02006 5.10683 5.18366 5.21798 5.34644 5.37270 5.52458 5.55508 5.61990 5.69406 5.83408 5.90965 6.29708 6.39244 6.67963 6.98109 7.14440 7.40384 7.89810 8.37706 9.16474 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012928 B = 0.003922 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.370737 B = 7138.167709 C = 8508.832574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.152 3.848 3 H 0.021 0.979 4 C -0.119 4.119 5 C -0.105 4.105 6 C 0.134 3.866 7 H 0.050 0.950 8 N -0.704 5.704 9 C 0.478 3.522 10 O -0.586 6.586 11 C 0.141 3.859 12 N -0.604 5.604 13 C 0.072 3.928 14 C 0.532 3.468 15 O -0.503 6.503 16 N -0.676 5.676 17 C 0.697 3.303 18 O -0.586 6.586 19 C 0.179 3.821 20 N -0.604 5.604 21 C -0.247 4.247 22 H 0.075 0.925 23 C -0.054 4.054 24 N -0.933 5.933 25 Si 0.951 3.049 26 H -0.259 1.259 27 H -0.288 1.288 28 H -0.305 1.305 29 H 0.045 0.955 30 H 0.035 0.965 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.418 0.582 37 H 0.128 0.872 38 H 0.185 0.815 39 H 0.179 0.821 40 H 0.132 0.868 41 H 0.436 0.564 42 H 0.034 0.966 43 H -0.004 1.004 44 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.558 -4.284 16.456 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.047 3.953 3 H 0.038 0.962 4 C -0.158 4.158 5 C -0.143 4.143 6 C 0.027 3.973 7 H 0.068 0.932 8 N -0.357 5.357 9 C 0.264 3.736 10 O -0.465 6.465 11 C 0.016 3.984 12 N -0.341 5.341 13 C -0.052 4.052 14 C 0.320 3.680 15 O -0.375 6.375 16 N -0.345 5.345 17 C 0.398 3.602 18 O -0.462 6.462 19 C 0.052 3.948 20 N -0.329 5.329 21 C -0.378 4.378 22 H 0.092 0.908 23 C -0.249 4.249 24 N -0.579 5.579 25 Si 0.780 3.220 26 H -0.183 1.183 27 H -0.214 1.214 28 H -0.233 1.233 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.256 0.744 37 H 0.145 0.855 38 H 0.203 0.797 39 H 0.196 0.804 40 H 0.149 0.851 41 H 0.278 0.722 42 H 0.052 0.948 43 H 0.014 0.986 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 13.122 -4.852 15.712 21.038 hybrid contribution -0.405 -0.229 -2.224 2.272 sum 12.717 -5.081 13.488 19.221 Atomic orbital electron populations 1.21743 0.94974 1.01065 1.00994 1.20820 0.94175 0.93409 0.86852 0.96157 1.21955 0.95067 1.00746 0.98023 1.21637 0.96690 1.00067 0.95921 1.21417 0.79819 0.98877 0.97160 0.93177 1.45821 1.07405 1.27288 1.55181 1.22061 0.92872 0.81127 0.77520 1.90754 1.65085 1.44580 1.46055 1.21490 0.89167 0.86816 1.00903 1.47109 1.70865 1.10412 1.05759 1.22819 1.07785 0.79004 0.95609 1.21186 0.73769 0.86201 0.86840 1.90841 1.47392 1.13601 1.85658 1.44304 1.66319 1.09606 1.14251 1.16081 0.77434 0.82764 0.83940 1.91035 1.58163 1.39422 1.57626 1.20764 0.83677 0.95157 0.95204 1.44342 1.02625 1.65801 1.20115 1.19495 0.95554 1.36202 0.86542 0.90778 1.25781 0.99043 1.01010 0.99036 1.70165 1.25884 1.45755 1.16132 0.85431 0.78670 0.78119 0.79736 1.18318 1.21439 1.23336 0.93631 0.94571 0.90180 0.88526 0.93026 0.88916 0.90812 0.74449 0.85459 0.79742 0.80374 0.85065 0.72166 0.94788 0.98611 0.94905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 7.95 71.98 0.57 -4.08 16 2 C 0.15 5.95 3.49 44.98 0.16 6.11 16 3 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.12 -3.46 5.38 30.68 0.17 -3.29 16 5 C -0.11 -2.76 5.35 30.63 0.16 -2.59 16 6 C 0.13 4.82 2.61 45.07 0.12 4.94 16 7 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 8 N -0.70 -18.83 5.08 -442.16 -2.25 -21.07 16 9 C 0.48 14.11 7.86 87.66 0.69 14.79 16 10 O -0.59 -24.96 16.10 -3.04 -0.05 -25.00 16 11 C 0.14 2.32 6.63 85.63 0.57 2.89 16 12 N -0.60 -12.32 2.51 -846.22 -2.12 -14.44 16 13 C 0.07 0.94 7.66 85.76 0.66 1.60 16 14 C 0.53 10.59 8.81 87.94 0.77 11.36 16 15 O -0.50 -12.59 18.02 -2.87 -0.05 -12.64 16 16 N -0.68 -15.20 5.70 -441.13 -2.52 -17.72 16 17 C 0.70 19.69 8.68 179.44 1.56 21.25 16 18 O -0.59 -22.55 17.71 -3.84 -0.07 -22.62 16 19 C 0.18 8.89 4.86 86.36 0.42 9.31 16 20 N -0.60 -30.62 2.99 -675.21 -2.02 -32.64 16 21 C -0.25 -14.05 8.57 84.03 0.72 -13.33 16 22 H 0.07 4.06 6.23 -2.91 -0.02 4.04 16 23 C -0.05 -3.22 4.94 84.86 0.42 -2.80 16 24 N -0.93 -59.83 11.23 21.65 0.24 -59.59 16 25 Si 0.95 48.97 29.58 68.60 2.03 51.00 16 26 H -0.26 -12.40 7.11 99.48 0.71 -11.70 16 27 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 28 H -0.31 -16.40 7.11 99.48 0.71 -15.69 16 29 H 0.04 1.67 7.42 -2.39 -0.02 1.66 16 30 H 0.04 1.44 7.64 -2.38 -0.02 1.42 16 31 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.42 7.00 8.60 -92.71 -0.80 6.20 16 37 H 0.13 2.05 8.03 -2.39 -0.02 2.03 16 38 H 0.19 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.18 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.44 8.62 8.96 -92.71 -0.83 7.79 16 42 H 0.03 2.08 6.15 -2.39 -0.01 2.07 16 43 H 0.00 -0.22 8.14 -2.39 -0.02 -0.23 16 44 H 0.24 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -94.75 363.39 -0.40 -95.15 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -0.58 Total: 13.42 kcal Atomic # 6 Polarization: 39.18 SS G_CDS: 6.98 Total: 46.16 kcal Atomic # 7 Polarization: -136.80 SS G_CDS: -8.66 Total: -145.46 kcal Atomic # 8 Polarization: -60.09 SS G_CDS: -0.17 Total: -60.26 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 2.03 Total: 51.00 kcal Total: -94.75 -0.40 -95.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071904204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.489 kcal (2) G-P(sol) polarization free energy of solvation -94.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds