Wall clock time and date at job start Fri Apr 10 2020 18:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 110.63982 * 2 1 4 4 C 1.54319 * 110.86817 * 236.75179 * 2 1 3 5 5 N 1.47027 * 107.27029 * 219.37414 * 4 2 1 6 6 C 1.36930 * 125.65012 * 178.99339 * 5 4 2 7 7 H 1.08002 * 120.00093 * 179.97438 * 6 5 4 8 8 C 1.38810 * 120.00371 * 359.96881 * 6 5 4 9 9 N 1.31626 * 119.99749 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00433 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47313 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47412 * 120.00414 * 10 8 6 13 13 H 1.48507 * 109.47143 * 239.99754 * 10 8 6 14 14 C 1.47423 * 108.70151 * 358.94013 * 5 4 2 15 15 C 1.54914 * 104.83435 * 24.13290 * 14 5 4 16 16 H 1.08994 * 111.03787 * 81.07043 * 15 14 5 17 17 C 1.53001 * 111.00604 * 204.91730 * 15 14 5 18 18 N 1.46498 * 109.46824 * 287.19333 * 17 15 14 19 19 C 1.34773 * 120.00187 * 180.02562 * 18 17 15 20 20 O 1.21283 * 119.99772 * 359.97438 * 19 18 17 21 21 C 1.50700 * 120.00370 * 179.97438 * 19 18 17 22 22 N 1.46497 * 109.47090 * 179.97438 * 21 19 18 23 23 C 1.47308 * 126.69139 * 90.00368 * 22 21 19 24 24 C 1.51588 * 103.59726 * 180.02562 * 23 22 21 25 25 O 1.21233 * 127.15706 * 179.97438 * 24 23 22 26 26 N 1.34772 * 105.67969 * 0.23847 * 24 23 22 27 27 C 1.33796 * 111.64406 * 359.59390 * 26 24 23 28 28 O 1.21538 * 123.76823 * 180.20852 * 27 26 24 29 29 H 1.09003 * 109.46904 * 296.85940 * 1 2 3 30 30 H 1.09000 * 109.46901 * 56.85771 * 1 2 3 31 31 H 1.08997 * 109.47266 * 176.85668 * 1 2 3 32 32 H 1.08998 * 109.88861 * 338.78864 * 4 2 1 33 33 H 1.09002 * 109.88081 * 99.96102 * 4 2 1 34 34 H 0.96995 * 120.00434 * 180.02562 * 9 8 6 35 35 H 1.09002 * 110.37142 * 265.29135 * 14 5 4 36 36 H 1.09003 * 110.36519 * 142.96759 * 14 5 4 37 37 H 1.08998 * 109.46930 * 167.19252 * 17 15 14 38 38 H 1.08997 * 109.47017 * 47.18926 * 17 15 14 39 39 H 0.97003 * 119.99839 * 359.97438 * 18 17 15 40 40 H 1.09005 * 109.46960 * 59.99687 * 21 19 18 41 41 H 1.08996 * 109.46843 * 299.99975 * 21 19 18 42 42 H 1.09001 * 110.60270 * 61.48669 * 23 22 21 43 43 H 1.09007 * 110.59685 * 298.54512 * 23 22 21 44 44 H 0.96993 * 124.17248 * 179.72284 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0798 -0.7906 -1.2059 5 7 3.2494 -1.5471 -0.7354 6 6 4.0125 -2.3917 -1.4965 7 1 4.8555 -2.9029 -1.0555 8 6 3.7027 -2.5909 -2.8348 9 7 2.6756 -1.9676 -3.3724 10 14 4.7433 -3.7436 -3.8729 11 1 5.8299 -4.3164 -3.0384 12 1 3.8922 -4.8414 -4.3980 13 1 5.3348 -2.9900 -5.0076 14 6 3.4652 -1.2447 0.6913 15 6 2.0789 -0.7935 1.2152 16 1 1.4465 -1.6525 1.4387 17 6 2.2236 0.1111 2.4407 18 7 2.6288 -0.6932 3.5961 19 6 2.8177 -0.1049 4.7938 20 8 2.6526 1.0906 4.9150 21 6 3.2339 -0.9323 5.9826 22 7 3.3726 -0.0662 7.1559 23 6 2.3207 0.2705 8.1307 24 6 3.0240 1.1879 9.1113 25 8 2.5453 1.7172 10.0914 26 7 4.2905 1.2974 8.6637 27 6 4.4853 0.5772 7.5531 28 8 5.5477 0.5148 6.9661 29 1 -0.3633 0.4643 0.9168 30 1 -0.3633 0.5618 -0.8605 31 1 -0.3634 -1.0261 -0.0563 32 1 1.3190 -1.4773 -1.5770 33 1 2.3775 -0.1015 -1.9963 34 1 2.4588 -2.1071 -4.3075 35 1 4.1930 -0.4410 0.8029 36 1 3.7992 -2.1365 1.2217 37 1 1.2692 0.5938 2.6506 38 1 2.9797 0.8712 2.2439 39 1 2.7605 -1.6494 3.4993 40 1 4.1885 -1.4151 5.7729 41 1 2.4777 -1.6923 6.1789 42 1 1.9629 -0.6275 8.6343 43 1 1.4972 0.7911 7.6417 44 1 4.9764 1.8308 9.0946 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102472767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:59 Heat of formation + Delta-G solvation = -50.780352 kcal Electronic energy + Delta-G solvation = -27286.237142 eV Core-core repulsion = 23240.381636 eV Total energy + Delta-G solvation = -4045.855506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.61010 -39.86521 -38.93692 -38.04803 -36.51600 -34.96263 -34.65653 -32.99848 -30.77529 -30.41184 -28.98704 -27.29044 -25.95769 -25.03578 -23.06403 -22.68997 -21.94385 -20.66113 -20.04511 -19.28816 -18.61663 -17.91949 -17.12757 -16.93153 -16.61861 -16.32310 -16.10910 -15.58550 -15.02778 -14.84984 -14.54279 -14.48868 -14.27345 -14.01002 -13.77233 -13.42671 -13.38065 -12.96055 -12.58479 -12.49272 -11.84215 -11.72666 -11.43873 -11.41391 -11.25552 -10.83956 -10.81468 -10.75318 -10.70287 -10.51241 -10.16311 -10.00748 -9.96137 -9.84565 -9.63043 -9.29616 -9.08388 -8.63222 -6.85884 -5.73905 -3.07528 1.20314 1.70541 2.42289 2.55782 2.62275 3.17319 3.37650 3.43383 3.45750 3.62016 4.26160 4.44947 4.47687 4.59515 4.74408 4.81571 5.04697 5.14328 5.21468 5.27853 5.49426 5.52514 5.60763 5.70789 5.78663 5.83438 5.97589 6.04046 6.13748 6.23733 6.33708 6.44949 6.53167 6.58223 6.58622 6.71368 6.90294 6.93248 7.37021 7.54484 7.61235 7.71158 7.81202 8.05687 8.23297 9.19504 9.79838 10.45624 11.37740 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.023819 B = 0.002302 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.244218 B =12160.663228 C =12995.761932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 H 0.067 0.933 4 C 0.183 3.817 5 N -0.607 5.607 6 C -0.228 4.228 7 H 0.078 0.922 8 C -0.009 4.009 9 N -0.921 5.921 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.141 3.859 15 C -0.113 4.113 16 H 0.081 0.919 17 C 0.133 3.867 18 N -0.720 5.720 19 C 0.489 3.511 20 O -0.535 6.535 21 C 0.132 3.868 22 N -0.608 5.608 23 C 0.064 3.936 24 C 0.530 3.470 25 O -0.473 6.473 26 N -0.678 5.678 27 C 0.707 3.293 28 O -0.536 6.536 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.252 0.748 35 H 0.019 0.981 36 H 0.036 0.964 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.403 0.597 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.036 1.501 22.638 23.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.131 4.131 3 H 0.085 0.915 4 C 0.059 3.941 5 N -0.333 5.333 6 C -0.356 4.356 7 H 0.096 0.904 8 C -0.205 4.205 9 N -0.569 5.569 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.015 3.985 15 C -0.132 4.132 16 H 0.099 0.901 17 C 0.010 3.990 18 N -0.372 5.372 19 C 0.273 3.727 20 O -0.412 6.412 21 C 0.007 3.993 22 N -0.347 5.347 23 C -0.062 4.062 24 C 0.316 3.684 25 O -0.343 6.343 26 N -0.348 5.348 27 C 0.408 3.592 28 O -0.409 6.409 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.238 0.762 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -3.918 2.400 22.544 23.007 hybrid contribution 0.877 -0.724 -0.627 1.298 sum -3.042 1.676 21.917 22.190 Atomic orbital electron populations 1.21690 0.95291 1.01609 1.00549 1.22443 0.95146 0.99146 0.96335 0.91466 1.21222 0.89060 0.93125 0.90722 1.44476 1.32433 1.51700 1.04682 1.19094 1.07443 1.17758 0.91313 0.90420 1.24810 0.98441 1.00371 0.96913 1.69971 1.28766 1.45618 1.12539 0.86049 0.79290 0.80081 0.80364 1.20519 1.21779 1.21760 1.21592 0.92957 0.97073 0.86876 1.22680 0.99457 0.98033 0.93061 0.90081 1.21424 1.00133 0.93803 0.83674 1.46032 1.69554 1.12445 1.09124 1.21057 0.77871 0.89047 0.84715 1.90726 1.50720 1.15025 1.84688 1.21188 1.05731 0.90855 0.81531 1.46915 1.10201 1.50764 1.26798 1.22555 0.93185 1.00772 0.89685 1.20783 0.82162 0.80636 0.84801 1.90865 1.70385 1.47471 1.25612 1.44309 1.15222 1.47575 1.27738 1.15755 0.84612 0.78625 0.80236 1.91056 1.26308 1.65603 1.57892 0.93706 0.92760 0.92696 0.93276 0.94045 0.93802 0.96329 0.94562 0.91572 0.91333 0.76216 0.85871 0.86100 0.85629 0.85555 0.72487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.17 37.16 0.34 -1.63 16 2 C -0.11 -1.92 3.01 -88.78 -0.27 -2.19 16 3 H 0.07 1.15 8.04 -51.93 -0.42 0.73 16 4 C 0.18 4.27 4.97 -3.06 -0.02 4.26 16 5 N -0.61 -14.95 3.39 -170.07 -0.58 -15.53 16 6 C -0.23 -6.21 10.28 -15.06 -0.15 -6.36 16 7 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 8 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 9 N -0.92 -26.65 10.31 55.49 0.57 -26.08 16 10 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 C 0.14 2.70 6.65 -2.53 -0.02 2.69 16 15 C -0.11 -1.72 2.49 -88.47 -0.22 -1.94 16 16 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 17 C 0.13 1.74 5.13 -4.04 -0.02 1.72 16 18 N -0.72 -7.45 5.50 -60.30 -0.33 -7.78 16 19 C 0.49 5.29 7.90 -10.99 -0.09 5.20 16 20 O -0.54 -8.08 16.43 5.55 0.09 -7.99 16 21 C 0.13 0.87 6.63 -5.20 -0.03 0.83 16 22 N -0.61 -4.78 2.51 -181.39 -0.45 -5.23 16 23 C 0.06 0.34 7.66 -4.32 -0.03 0.30 16 24 C 0.53 4.03 8.81 -10.55 -0.09 3.94 16 25 O -0.47 -4.90 18.02 5.60 0.10 -4.80 16 26 N -0.68 -5.34 5.70 -15.79 -0.09 -5.43 16 27 C 0.71 7.35 8.68 -88.02 -0.76 6.58 16 28 O -0.54 -7.69 17.71 5.33 0.09 -7.59 16 29 H 0.04 0.56 8.09 -51.93 -0.42 0.14 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.05 1.26 7.02 -51.93 -0.36 0.90 16 33 H 0.04 1.09 7.50 -51.93 -0.39 0.70 16 34 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 38 H 0.07 1.03 7.96 -51.93 -0.41 0.61 16 39 H 0.40 3.21 8.47 -40.82 -0.35 2.86 16 40 H 0.12 0.75 8.03 -51.93 -0.42 0.34 16 41 H 0.12 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.13 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.13 0.64 8.14 -51.92 -0.42 0.22 16 44 H 0.43 2.65 8.96 -40.82 -0.37 2.28 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -37.34 370.36 -7.96 -45.30 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.46 Total: -0.29 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: -1.46 Total: 13.06 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.88 Total: -60.04 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: 0.29 Total: -20.39 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.34 -7.96 -45.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102472767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.479 kcal (2) G-P(sol) polarization free energy of solvation -37.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds