Wall clock time and date at job start Fri Apr 10 2020 18:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46958 * 2 1 4 4 C 1.53002 * 109.47101 * 240.00650 * 2 1 3 5 5 C 1.52992 * 109.47374 * 175.00038 * 4 2 1 6 6 H 1.08999 * 109.47355 * 304.99881 * 5 4 2 7 7 C 1.52996 * 109.47361 * 184.99895 * 5 4 2 8 8 N 1.46507 * 109.47352 * 64.99636 * 5 4 2 9 9 C 1.36938 * 120.00120 * 205.00288 * 8 5 4 10 10 H 1.07993 * 119.99826 * 0.02562 * 9 8 5 11 11 C 1.38812 * 119.99756 * 179.97438 * 9 8 5 12 12 N 1.31612 * 120.00025 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99943 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46712 * 90.00102 * 13 11 9 15 15 H 1.48493 * 109.47377 * 210.00574 * 13 11 9 16 16 H 1.48503 * 109.46898 * 330.00516 * 13 11 9 17 17 N 1.46497 * 109.47357 * 120.00690 * 2 1 3 18 18 C 1.34780 * 119.99566 * 275.00168 * 17 2 1 19 19 O 1.21280 * 120.00423 * 359.97438 * 18 17 2 20 20 C 1.50701 * 119.99795 * 180.02562 * 18 17 2 21 21 N 1.46499 * 109.46992 * 179.97438 * 20 18 17 22 22 C 1.36161 * 119.85883 * 269.72152 * 21 20 18 23 23 C 1.35542 * 119.26043 * 179.77313 * 22 21 20 24 24 C 1.40738 * 118.99904 * 0.49943 * 23 22 21 25 25 O 1.35156 * 120.16107 * 179.72686 * 24 23 22 26 26 N 1.32420 * 119.67076 * 359.74698 * 24 23 22 27 27 C 1.33283 * 120.72863 * 0.02562 * 26 24 23 28 28 O 1.21975 * 119.47388 * 179.97438 * 27 26 24 29 29 H 1.09000 * 109.46920 * 299.99358 * 1 2 3 30 30 H 1.09004 * 109.47178 * 59.99589 * 1 2 3 31 31 H 1.08993 * 109.47354 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46596 * 295.00070 * 4 2 1 33 33 H 1.09000 * 109.47314 * 54.99345 * 4 2 1 34 34 H 1.08997 * 109.47396 * 180.02562 * 7 5 4 35 35 H 1.09003 * 109.47120 * 299.99851 * 7 5 4 36 36 H 1.08993 * 109.47473 * 60.00041 * 7 5 4 37 37 H 0.97003 * 119.99323 * 25.00322 * 8 5 4 38 38 H 0.97008 * 119.99960 * 179.97438 * 12 11 9 39 39 H 0.96995 * 120.00423 * 94.99474 * 17 2 1 40 40 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 41 41 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 42 42 H 1.08003 * 120.36533 * 0.02861 * 22 21 20 43 43 H 1.07999 * 120.49900 * 180.24760 * 23 22 21 44 44 H 0.96703 * 113.99807 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5647 -0.6132 -1.3138 6 1 3.8570 0.4359 -1.2678 7 6 4.0644 -1.2248 -2.6242 8 7 4.1537 -1.3342 -0.1826 9 6 5.3944 -0.9856 0.2805 10 1 5.9385 -0.1789 -0.1880 11 6 5.9521 -1.6684 1.3526 12 7 5.2887 -2.6512 1.9238 13 14 7.6448 -1.1934 1.9839 14 1 7.5070 -0.1555 3.0369 15 1 8.3148 -2.3902 2.5530 16 1 8.4583 -0.6567 0.8633 17 7 2.0184 -0.6907 1.1960 18 6 2.1471 -0.0184 2.3571 19 8 1.8590 1.1584 2.4116 20 6 2.6500 -0.7288 3.5873 21 7 2.6997 0.2126 4.7087 22 6 3.8336 0.9293 4.9424 23 6 3.8647 1.8003 5.9805 24 6 2.7248 1.9314 6.7955 25 8 2.7320 2.7888 7.8402 26 7 1.6454 1.2103 6.5339 27 6 1.6264 0.3607 5.5071 28 8 0.6201 -0.2926 5.2872 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7714 -1.2057 33 1 1.6053 -0.2616 -2.1370 34 1 5.1507 -1.1483 -2.6700 35 1 3.7722 -2.2739 -2.6702 36 1 3.6263 -0.6884 -3.4658 37 1 3.6647 -2.0585 0.2384 38 1 5.6786 -3.1286 2.6729 39 1 2.2490 -1.6318 1.1524 40 1 1.9778 -1.5511 3.8324 41 1 3.6493 -1.1205 3.3977 42 1 4.6971 0.8081 4.3052 43 1 4.7522 2.3818 6.1817 44 1 1.9039 2.8075 8.3393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134899541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:52 Heat of formation + Delta-G solvation = -51.440332 kcal Electronic energy + Delta-G solvation = -28976.111262 eV Core-core repulsion = 24930.227137 eV Total energy + Delta-G solvation = -4045.884125 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.63838 -39.43716 -38.53323 -36.94520 -36.44508 -34.49817 -34.12944 -32.45787 -31.26001 -30.72975 -28.76574 -27.64175 -26.38083 -24.67966 -23.82370 -23.28494 -21.40384 -20.36180 -19.77827 -19.66991 -17.99915 -17.38515 -17.23059 -17.02558 -15.85361 -15.61942 -15.51928 -14.95118 -14.62950 -14.60470 -14.21353 -13.97085 -13.79402 -13.74407 -13.38066 -13.16071 -13.03893 -12.78398 -12.25292 -12.10599 -11.86702 -11.76843 -11.73163 -11.69563 -11.12017 -10.98564 -10.86134 -10.64622 -10.46036 -10.37922 -10.23175 -10.01977 -9.84177 -9.70683 -9.41892 -9.13763 -8.50318 -8.41763 -7.12743 -5.98741 -3.25293 0.79768 1.82049 2.51024 3.11062 3.21125 3.22944 3.34992 3.36110 3.64320 4.01593 4.37788 4.40680 4.73191 4.97764 4.99153 5.16336 5.30420 5.32160 5.40607 5.44295 5.47148 5.59406 5.62818 5.73519 5.82258 5.91826 5.94616 6.07040 6.16444 6.21378 6.32190 6.33934 6.48151 6.52196 6.55582 6.75766 6.95390 7.04570 7.05021 7.53025 7.92119 8.01048 8.20678 8.31119 8.69893 9.31802 9.86961 10.23294 11.23341 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011253 B = 0.005079 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.694241 B = 5511.153974 C = 7317.245878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.152 3.848 3 H 0.083 0.917 4 C -0.134 4.134 5 C 0.169 3.831 6 H 0.049 0.951 7 C -0.164 4.164 8 N -0.718 5.718 9 C -0.220 4.220 10 H 0.069 0.931 11 C -0.017 4.017 12 N -0.938 5.938 13 Si 0.898 3.102 14 H -0.291 1.291 15 H -0.292 1.292 16 H -0.284 1.284 17 N -0.690 5.690 18 C 0.521 3.479 19 O -0.555 6.555 20 C 0.071 3.929 21 N -0.501 5.501 22 C 0.227 3.773 23 C -0.299 4.299 24 C 0.457 3.543 25 O -0.451 6.451 26 N -0.620 5.620 27 C 0.661 3.339 28 O -0.538 6.538 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.036 0.964 37 H 0.378 0.622 38 H 0.255 0.745 39 H 0.407 0.593 40 H 0.125 0.875 41 H 0.149 0.851 42 H 0.184 0.816 43 H 0.162 0.838 44 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.561 5.212 2.245 6.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.047 3.953 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.059 3.941 6 H 0.067 0.933 7 C -0.224 4.224 8 N -0.361 5.361 9 C -0.352 4.352 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.588 5.588 13 Si 0.729 3.271 14 H -0.219 1.219 15 H -0.218 1.218 16 H -0.209 1.209 17 N -0.342 5.342 18 C 0.306 3.694 19 O -0.434 6.434 20 C -0.055 4.055 21 N -0.215 5.215 22 C 0.090 3.910 23 C -0.325 4.325 24 C 0.256 3.744 25 O -0.246 6.246 26 N -0.377 5.377 27 C 0.363 3.637 28 O -0.413 6.413 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.213 0.787 38 H 0.065 0.935 39 H 0.245 0.755 40 H 0.143 0.857 41 H 0.167 0.833 42 H 0.202 0.798 43 H 0.180 0.820 44 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -4.519 5.744 2.374 7.684 hybrid contribution 1.311 -0.546 0.225 1.438 sum -3.208 5.198 2.599 6.638 Atomic orbital electron populations 1.22208 0.96123 1.01819 1.02023 1.20821 0.92622 0.97593 0.84257 0.89910 1.22213 0.97690 1.00751 0.96571 1.20299 0.89755 0.95856 0.88157 0.93345 1.22410 1.01510 1.00426 0.98035 1.42514 1.18677 1.40004 1.34913 1.19280 0.93240 1.12744 1.09937 0.91341 1.24604 0.98383 0.98805 0.99370 1.69597 1.38097 1.24704 1.26451 0.86330 0.84787 0.77210 0.78761 1.21850 1.21806 1.20932 1.45831 1.65500 1.14472 1.08418 1.20263 0.77213 0.87189 0.84771 1.90667 1.51383 1.16031 1.85295 1.22036 1.08085 0.91810 0.83578 1.46015 1.13079 1.35753 1.26688 1.22509 0.90052 0.85481 0.93008 1.20526 1.01266 1.09727 1.00977 1.20388 0.88813 0.81985 0.83243 1.84978 1.43342 1.56826 1.39423 1.69570 1.27246 1.17111 1.23806 1.17230 0.82952 0.83161 0.80387 1.90970 1.30210 1.47669 1.72417 0.92376 0.92077 0.92664 0.91589 0.90686 0.92864 0.93541 0.94504 0.78667 0.93469 0.75515 0.85729 0.83344 0.79846 0.82000 0.73050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.48 37.16 0.35 -1.89 16 2 C 0.15 2.34 2.57 -67.93 -0.17 2.16 16 3 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.13 -1.86 4.43 -26.73 -0.12 -1.98 16 5 C 0.17 2.87 2.89 -67.93 -0.20 2.68 16 6 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 7 C -0.16 -2.60 9.49 37.16 0.35 -2.25 16 8 N -0.72 -14.57 3.84 -53.43 -0.21 -14.78 16 9 C -0.22 -5.13 9.93 -15.06 -0.15 -5.28 16 10 H 0.07 1.64 7.83 -52.49 -0.41 1.23 16 11 C -0.02 -0.40 5.50 -17.43 -0.10 -0.50 16 12 N -0.94 -22.50 12.78 55.49 0.71 -21.79 16 13 Si 0.90 19.37 29.55 -169.99 -5.02 14.34 16 14 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 N -0.69 -11.62 3.80 -53.80 -0.20 -11.82 16 18 C 0.52 9.81 7.86 -10.98 -0.09 9.72 16 19 O -0.55 -12.01 16.09 5.56 0.09 -11.92 16 20 C 0.07 1.22 5.83 -5.19 -0.03 1.19 16 21 N -0.50 -8.61 2.08 -123.16 -0.26 -8.87 16 22 C 0.23 3.22 10.40 -16.59 -0.17 3.05 16 23 C -0.30 -3.77 10.03 -39.60 -0.40 -4.16 16 24 C 0.46 6.28 7.91 -16.35 -0.13 6.15 16 25 O -0.45 -4.63 13.55 -17.17 -0.23 -4.86 16 26 N -0.62 -10.76 10.40 -16.72 -0.17 -10.94 16 27 C 0.66 12.98 8.34 -88.42 -0.74 12.24 16 28 O -0.54 -12.22 16.72 4.94 0.08 -12.14 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.38 7.88 5.70 -40.82 -0.23 7.64 16 38 H 0.26 6.13 8.31 -40.82 -0.34 5.79 16 39 H 0.41 6.80 6.51 -40.82 -0.27 6.53 16 40 H 0.12 2.11 7.38 -51.93 -0.38 1.72 16 41 H 0.15 2.61 7.75 -51.93 -0.40 2.20 16 42 H 0.18 2.29 8.06 -52.48 -0.42 1.87 16 43 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.41 2.70 8.98 45.56 0.41 3.11 16 LS Contribution 374.17 15.07 5.64 5.64 Total: -1.00 -31.39 374.17 -6.62 -38.01 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -5.46 Total: 17.99 kcal Atomic # 6 Polarization: 22.71 SS G_CDS: -1.58 Total: 21.13 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -0.13 Total: -68.19 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.06 Total: -28.92 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.39 -6.62 -38.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134899541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.427 kcal (2) G-P(sol) polarization free energy of solvation -31.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds