Wall clock time and date at job start Fri Apr 10 2020 18:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46958 * 2 1 4 4 C 1.53002 * 109.47101 * 240.00650 * 2 1 3 5 5 C 1.52992 * 109.47374 * 175.00038 * 4 2 1 6 6 H 1.08999 * 109.47355 * 304.99881 * 5 4 2 7 7 C 1.52996 * 109.47361 * 184.99895 * 5 4 2 8 8 N 1.46507 * 109.47352 * 64.99636 * 5 4 2 9 9 C 1.36938 * 120.00120 * 205.00288 * 8 5 4 10 10 H 1.07993 * 119.99826 * 0.02562 * 9 8 5 11 11 C 1.38812 * 119.99756 * 179.97438 * 9 8 5 12 12 N 1.31612 * 120.00025 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99943 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46712 * 90.00102 * 13 11 9 15 15 H 1.48493 * 109.47377 * 210.00574 * 13 11 9 16 16 H 1.48503 * 109.46898 * 330.00516 * 13 11 9 17 17 N 1.46497 * 109.47357 * 120.00690 * 2 1 3 18 18 C 1.34780 * 119.99566 * 275.00168 * 17 2 1 19 19 O 1.21280 * 120.00423 * 359.97438 * 18 17 2 20 20 C 1.50701 * 119.99795 * 180.02562 * 18 17 2 21 21 N 1.46499 * 109.46992 * 179.97438 * 20 18 17 22 22 C 1.36161 * 119.85883 * 269.72152 * 21 20 18 23 23 C 1.35542 * 119.26043 * 179.77313 * 22 21 20 24 24 C 1.40738 * 118.99904 * 0.49943 * 23 22 21 25 25 O 1.35156 * 120.16107 * 179.72686 * 24 23 22 26 26 N 1.32420 * 119.67076 * 359.74698 * 24 23 22 27 27 C 1.33283 * 120.72863 * 0.02562 * 26 24 23 28 28 O 1.21975 * 119.47388 * 179.97438 * 27 26 24 29 29 H 1.09000 * 109.46920 * 299.99358 * 1 2 3 30 30 H 1.09004 * 109.47178 * 59.99589 * 1 2 3 31 31 H 1.08993 * 109.47354 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46596 * 295.00070 * 4 2 1 33 33 H 1.09000 * 109.47314 * 54.99345 * 4 2 1 34 34 H 1.08997 * 109.47396 * 180.02562 * 7 5 4 35 35 H 1.09003 * 109.47120 * 299.99851 * 7 5 4 36 36 H 1.08993 * 109.47473 * 60.00041 * 7 5 4 37 37 H 0.97003 * 119.99323 * 25.00322 * 8 5 4 38 38 H 0.97008 * 119.99960 * 179.97438 * 12 11 9 39 39 H 0.96995 * 120.00423 * 94.99474 * 17 2 1 40 40 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 41 41 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 42 42 H 1.08003 * 120.36533 * 0.02861 * 22 21 20 43 43 H 1.07999 * 120.49900 * 180.24760 * 23 22 21 44 44 H 0.96703 * 113.99807 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5647 -0.6132 -1.3138 6 1 3.8570 0.4359 -1.2678 7 6 4.0644 -1.2248 -2.6242 8 7 4.1537 -1.3342 -0.1826 9 6 5.3944 -0.9856 0.2805 10 1 5.9385 -0.1789 -0.1880 11 6 5.9521 -1.6684 1.3526 12 7 5.2887 -2.6512 1.9238 13 14 7.6448 -1.1934 1.9839 14 1 7.5070 -0.1555 3.0369 15 1 8.3148 -2.3902 2.5530 16 1 8.4583 -0.6567 0.8633 17 7 2.0184 -0.6907 1.1960 18 6 2.1471 -0.0184 2.3571 19 8 1.8590 1.1584 2.4116 20 6 2.6500 -0.7288 3.5873 21 7 2.6997 0.2126 4.7087 22 6 3.8336 0.9293 4.9424 23 6 3.8647 1.8003 5.9805 24 6 2.7248 1.9314 6.7955 25 8 2.7320 2.7888 7.8402 26 7 1.6454 1.2103 6.5339 27 6 1.6264 0.3607 5.5071 28 8 0.6201 -0.2926 5.2872 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7714 -1.2057 33 1 1.6053 -0.2616 -2.1370 34 1 5.1507 -1.1483 -2.6700 35 1 3.7722 -2.2739 -2.6702 36 1 3.6263 -0.6884 -3.4658 37 1 3.6647 -2.0585 0.2384 38 1 5.6786 -3.1286 2.6729 39 1 2.2490 -1.6318 1.1524 40 1 1.9778 -1.5511 3.8324 41 1 3.6493 -1.1205 3.3977 42 1 4.6971 0.8081 4.3052 43 1 4.7522 2.3818 6.1817 44 1 1.9039 2.8075 8.3393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134899541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:51 Heat of formation + Delta-G solvation = -76.687349 kcal Electronic energy + Delta-G solvation = -28977.206055 eV Core-core repulsion = 24930.227137 eV Total energy + Delta-G solvation = -4046.978918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.91946 -40.80812 -39.65536 -38.37043 -37.79742 -35.88230 -35.48220 -34.04665 -32.57028 -32.06240 -30.31014 -28.95269 -27.59284 -25.85411 -25.53488 -24.56263 -22.70907 -21.72381 -21.19413 -20.78922 -19.17149 -19.07805 -18.58259 -18.37541 -17.20499 -16.92975 -16.81138 -16.53438 -16.06628 -15.67052 -15.49355 -15.44721 -15.26003 -14.89263 -14.75214 -14.40589 -14.34408 -14.16079 -13.60466 -13.43570 -13.28659 -13.09762 -13.05660 -12.86602 -12.72102 -12.56384 -12.28994 -12.11001 -12.05093 -11.72893 -11.56693 -11.42985 -11.38509 -11.02428 -10.86083 -10.83631 -9.91870 -9.70527 -8.80655 -7.79960 -5.04478 -0.36083 0.61421 1.22896 1.51247 1.59869 1.62228 1.63978 2.19834 2.30789 2.65350 2.71349 3.22146 3.51202 3.58581 3.68986 3.84827 3.88546 4.07026 4.12129 4.17529 4.29671 4.36994 4.39548 4.52093 4.57145 4.67540 4.81626 4.88040 4.91189 5.06739 5.11330 5.13423 5.17478 5.32811 5.33703 5.43077 5.63465 5.65692 5.72491 6.14520 6.41098 6.57165 6.65199 6.98045 7.26463 7.50207 8.20705 8.49713 9.40634 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011253 B = 0.005079 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.694241 B = 5511.153974 C = 7317.245878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.149 3.851 3 H 0.060 0.940 4 C -0.119 4.119 5 C 0.164 3.836 6 H 0.033 0.967 7 C -0.155 4.155 8 N -0.721 5.721 9 C -0.224 4.224 10 H 0.058 0.942 11 C -0.051 4.051 12 N -0.949 5.949 13 Si 0.939 3.061 14 H -0.276 1.276 15 H -0.304 1.304 16 H -0.292 1.292 17 N -0.683 5.683 18 C 0.515 3.485 19 O -0.588 6.588 20 C 0.081 3.919 21 N -0.506 5.506 22 C 0.208 3.792 23 C -0.278 4.278 24 C 0.462 3.538 25 O -0.434 6.434 26 N -0.645 5.645 27 C 0.652 3.348 28 O -0.588 6.588 29 H 0.029 0.971 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.030 0.970 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.375 0.625 38 H 0.250 0.750 39 H 0.408 0.592 40 H 0.122 0.878 41 H 0.147 0.853 42 H 0.201 0.799 43 H 0.201 0.799 44 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.134 6.078 1.820 7.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.045 3.955 3 H 0.079 0.921 4 C -0.158 4.158 5 C 0.055 3.945 6 H 0.051 0.949 7 C -0.215 4.215 8 N -0.364 5.364 9 C -0.356 4.356 10 H 0.076 0.924 11 C -0.244 4.244 12 N -0.600 5.600 13 Si 0.771 3.229 14 H -0.202 1.202 15 H -0.232 1.232 16 H -0.218 1.218 17 N -0.334 5.334 18 C 0.301 3.699 19 O -0.469 6.469 20 C -0.045 4.045 21 N -0.220 5.220 22 C 0.073 3.927 23 C -0.304 4.304 24 C 0.263 3.737 25 O -0.230 6.230 26 N -0.404 5.404 27 C 0.354 3.646 28 O -0.467 6.467 29 H 0.048 0.952 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.210 0.790 38 H 0.060 0.940 39 H 0.246 0.754 40 H 0.140 0.860 41 H 0.164 0.836 42 H 0.218 0.782 43 H 0.218 0.782 44 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -4.058 6.660 1.948 8.039 hybrid contribution 1.238 -0.701 0.379 1.472 sum -2.820 5.959 2.327 6.992 Atomic orbital electron populations 1.22120 0.94509 1.02613 1.01961 1.20946 0.93812 0.96466 0.84300 0.92147 1.22124 0.95208 1.01499 0.96928 1.20461 0.91761 0.94619 0.87636 0.94883 1.22278 1.00134 1.00766 0.98290 1.42569 1.17891 1.40132 1.35852 1.19361 0.94264 1.12199 1.09769 0.92424 1.24991 1.00306 0.99250 0.99874 1.69679 1.38589 1.25186 1.26534 0.85671 0.82245 0.76662 0.78302 1.20243 1.23168 1.21825 1.45896 1.64593 1.14420 1.08488 1.20533 0.76931 0.86885 0.85578 1.90635 1.53060 1.17384 1.85870 1.21880 1.07553 0.91754 0.83283 1.45883 1.13577 1.36197 1.26309 1.22954 0.89668 0.85890 0.94200 1.20976 1.01884 1.08298 0.99211 1.20608 0.88157 0.81240 0.83670 1.84983 1.44599 1.55178 1.38272 1.69492 1.29167 1.17991 1.23777 1.17449 0.82916 0.83272 0.80987 1.90909 1.32048 1.49805 1.73928 0.95152 0.89387 0.91401 0.90537 0.87434 0.95103 0.93470 0.91467 0.79022 0.94026 0.75363 0.86015 0.83560 0.78228 0.78233 0.70922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.48 71.98 0.68 -3.33 16 2 C 0.15 4.46 2.57 44.99 0.12 4.57 16 3 H 0.06 2.10 7.58 -2.38 -0.02 2.08 16 4 C -0.12 -3.04 4.43 30.59 0.14 -2.91 16 5 C 0.16 5.35 2.89 44.99 0.13 5.48 16 6 H 0.03 1.19 8.08 -2.39 -0.02 1.17 16 7 C -0.15 -4.62 9.49 71.98 0.68 -3.94 16 8 N -0.72 -28.97 3.84 -322.95 -1.24 -30.21 16 9 C -0.22 -10.38 9.93 84.03 0.83 -9.55 16 10 H 0.06 2.77 7.83 -2.91 -0.02 2.74 16 11 C -0.05 -2.39 5.50 84.86 0.47 -1.92 16 12 N -0.95 -45.40 12.78 21.65 0.28 -45.12 16 13 Si 0.94 39.33 29.55 68.60 2.03 41.36 16 14 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 15 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 16 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 17 N -0.68 -23.10 3.80 -442.53 -1.68 -24.78 16 18 C 0.52 19.86 7.86 87.66 0.69 20.55 16 19 O -0.59 -26.11 16.09 -3.03 -0.05 -26.16 16 20 C 0.08 2.90 5.83 85.63 0.50 3.40 16 21 N -0.51 -17.61 2.08 -661.76 -1.38 -18.99 16 22 C 0.21 5.69 10.40 83.40 0.87 6.56 16 23 C -0.28 -6.34 10.03 22.26 0.22 -6.11 16 24 C 0.46 11.86 7.91 85.22 0.67 12.54 16 25 O -0.43 -7.66 13.55 -84.34 -1.14 -8.80 16 26 N -0.65 -22.28 10.40 -438.81 -4.56 -26.84 16 27 C 0.65 26.21 8.34 179.58 1.50 27.71 16 28 O -0.59 -27.90 16.72 -5.23 -0.09 -27.99 16 29 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.81 8.14 -2.38 -0.02 1.80 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.38 15.46 5.70 -92.71 -0.53 14.94 16 38 H 0.25 12.00 8.31 -92.70 -0.77 11.23 16 39 H 0.41 13.64 6.51 -92.71 -0.60 13.04 16 40 H 0.12 4.34 7.38 -2.39 -0.02 4.32 16 41 H 0.15 5.24 7.75 -2.39 -0.02 5.22 16 42 H 0.20 4.71 8.06 -2.91 -0.02 4.68 16 43 H 0.20 2.99 8.06 -2.91 -0.02 2.96 16 44 H 0.43 4.54 8.98 -74.06 -0.66 3.87 16 Total: -1.00 -69.44 374.17 -1.09 -70.53 By element: Atomic # 1 Polarization: 44.70 SS G_CDS: -0.75 Total: 43.96 kcal Atomic # 6 Polarization: 45.54 SS G_CDS: 7.50 Total: 53.04 kcal Atomic # 7 Polarization: -137.35 SS G_CDS: -8.59 Total: -145.94 kcal Atomic # 8 Polarization: -61.67 SS G_CDS: -1.28 Total: -62.95 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -69.44 -1.09 -70.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134899541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.157 kcal (2) G-P(sol) polarization free energy of solvation -69.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds