Wall clock time and date at job start Fri Apr 10 2020 18:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46832 * 2 1 4 4 C 1.53001 * 109.46622 * 240.00786 * 2 1 3 5 5 C 1.53000 * 109.47437 * 65.58275 * 4 2 1 6 6 H 1.08997 * 109.46856 * 303.22844 * 5 4 2 7 7 C 1.53002 * 109.47130 * 183.23629 * 5 4 2 8 8 N 1.46497 * 109.47112 * 63.23312 * 5 4 2 9 9 C 1.34778 * 119.99587 * 208.86552 * 8 5 4 10 10 O 1.21666 * 120.00680 * 4.93351 * 9 8 5 11 11 C 1.46902 * 119.99464 * 184.92850 * 9 8 5 12 12 C 1.39432 * 120.81881 * 173.62865 * 11 9 8 13 13 N 1.32562 * 119.70150 * 179.72134 * 12 11 9 14 14 C 1.31848 * 121.61143 * 0.02562 * 13 12 11 15 15 O 1.34687 * 119.11079 * 179.97438 * 14 13 12 16 16 N 1.35658 * 121.77788 * 359.97438 * 14 13 12 17 17 C 1.46502 * 119.95649 * 180.02562 * 16 14 13 18 18 C 1.35021 * 120.08516 * 0.02562 * 16 14 13 19 19 O 1.21839 * 120.76225 * 180.02562 * 18 16 14 20 20 N 1.46494 * 109.47408 * 120.00627 * 2 1 3 21 21 C 1.36935 * 120.00000 * 279.07713 * 20 2 1 22 22 H 1.07996 * 119.99721 * 4.98128 * 21 20 2 23 23 C 1.38810 * 119.99955 * 184.97804 * 21 20 2 24 24 N 1.31624 * 119.99691 * 184.80506 * 23 21 20 25 25 Si 1.86800 * 120.00238 * 4.80332 * 23 21 20 26 26 H 1.48497 * 109.47161 * 94.50274 * 25 23 21 27 27 H 1.48504 * 109.47075 * 214.50778 * 25 23 21 28 28 H 1.48501 * 109.46686 * 334.50283 * 25 23 21 29 29 H 1.09004 * 109.47133 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47341 * 299.99466 * 1 2 3 31 31 H 1.09002 * 109.47412 * 59.99424 * 1 2 3 32 32 H 1.08996 * 109.47426 * 305.57705 * 4 2 1 33 33 H 1.09007 * 109.47176 * 185.58278 * 4 2 1 34 34 H 1.08991 * 109.47435 * 59.99586 * 7 5 4 35 35 H 1.09004 * 109.47317 * 180.02562 * 7 5 4 36 36 H 1.09007 * 109.47015 * 299.99749 * 7 5 4 37 37 H 0.96994 * 119.99959 * 28.86818 * 8 5 4 38 38 H 1.08006 * 120.14631 * 359.75212 * 12 11 9 39 39 H 0.96699 * 117.00460 * 359.97438 * 15 14 13 40 40 H 1.09002 * 109.46836 * 0.02562 * 17 16 14 41 41 H 1.08999 * 109.46872 * 120.00278 * 17 16 14 42 42 H 1.09000 * 109.47228 * 240.00232 * 17 16 14 43 43 H 0.96998 * 119.99848 * 99.07847 * 20 2 1 44 44 H 0.97003 * 119.99746 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6477 0.0767 -2.4946 6 1 0.5664 0.2134 -2.5128 7 6 2.0866 -0.6844 -3.7472 8 7 2.3049 1.3856 -2.4630 9 6 1.7258 2.4450 -3.0619 10 8 0.6169 2.3366 -3.5507 11 6 2.4336 3.7308 -3.1245 12 6 1.9109 4.7992 -3.8521 13 7 2.5654 5.9514 -3.8890 14 6 3.7076 6.1181 -3.2519 15 8 4.3303 7.3102 -3.3241 16 7 4.2726 5.1213 -2.5256 17 6 5.5430 5.3505 -1.8329 18 6 3.6656 3.9183 -2.4403 19 8 4.1618 3.0146 -1.7910 20 7 2.0184 -0.6907 1.1960 21 6 2.0703 -0.0306 2.3947 22 1 1.6768 0.9718 2.4765 23 6 2.6285 -0.6499 3.5044 24 7 2.5935 -0.0542 4.6776 25 14 3.4293 -2.3289 3.3330 26 1 4.8894 -2.1615 3.1206 27 1 3.1960 -3.1171 4.5698 28 1 2.8388 -3.0426 2.1724 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.5973 -1.7158 -1.3009 33 1 3.1254 -0.8086 -1.2009 34 1 1.5977 -1.6582 -3.7707 35 1 1.8076 -0.1158 -4.6343 36 1 3.1680 -0.8211 -3.7289 37 1 3.1568 1.4897 -2.0111 38 1 0.9768 4.6887 -4.3829 39 1 3.9010 7.9987 -3.8502 40 1 5.8775 6.3717 -2.0158 41 1 5.4054 5.1998 -0.7622 42 1 6.2912 4.6507 -2.2051 43 1 2.3050 -1.6156 1.1389 44 1 2.9840 -0.4868 5.4531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135176454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:19 Heat of formation + Delta-G solvation = -49.162467 kcal Electronic energy + Delta-G solvation = -28221.933620 eV Core-core repulsion = 24176.148271 eV Total energy + Delta-G solvation = -4045.785349 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.37225 -39.83985 -38.93422 -37.46421 -36.78050 -35.60684 -34.54086 -32.10912 -31.34238 -30.22410 -28.93412 -28.43292 -26.24114 -25.42264 -24.17285 -23.46425 -21.71834 -20.62146 -19.89815 -19.66170 -19.16210 -17.98392 -17.36826 -17.33043 -16.50320 -16.19385 -15.77071 -15.09192 -14.98956 -14.83689 -14.42585 -14.20580 -14.04360 -13.75696 -13.58374 -13.43184 -13.07602 -13.00471 -12.58417 -12.53353 -12.34930 -12.04875 -11.87601 -11.54651 -11.20910 -11.00118 -10.87779 -10.71354 -10.55634 -10.52591 -10.35059 -10.05405 -9.82034 -9.75649 -9.50265 -8.87795 -8.81824 -8.58909 -7.14260 -5.68386 -3.02184 0.00336 1.26485 1.39670 2.65170 2.79771 3.42878 3.46812 3.47087 3.50941 3.57748 3.64481 4.04739 4.60754 4.67002 4.85490 4.87866 4.97106 5.02313 5.18940 5.29711 5.34534 5.48760 5.53627 5.59918 5.71689 5.78209 5.89267 5.90906 6.01492 6.11560 6.27386 6.33814 6.40803 6.42591 6.60597 6.68008 6.87508 7.01950 7.15827 7.19638 7.31439 7.94178 8.11754 8.51562 8.53745 9.32062 10.04554 10.26119 11.50467 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.013029 B = 0.003620 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.575729 B = 7733.986806 C = 9005.996049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.178 3.822 3 H 0.053 0.947 4 C -0.135 4.135 5 C 0.139 3.861 6 H 0.095 0.905 7 C -0.160 4.160 8 N -0.706 5.706 9 C 0.587 3.413 10 O -0.557 6.557 11 C -0.348 4.348 12 C 0.265 3.735 13 N -0.594 5.594 14 C 0.607 3.393 15 O -0.454 6.454 16 N -0.508 5.508 17 C 0.055 3.945 18 C 0.550 3.450 19 O -0.503 6.503 20 N -0.751 5.751 21 C -0.234 4.234 22 H 0.087 0.913 23 C 0.001 3.999 24 N -0.937 5.937 25 Si 0.888 3.112 26 H -0.286 1.286 27 H -0.293 1.293 28 H -0.278 1.278 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.414 0.586 38 H 0.189 0.811 39 H 0.445 0.555 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.361 0.639 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.798 14.543 -22.405 27.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.069 3.931 3 H 0.071 0.929 4 C -0.174 4.174 5 C 0.034 3.966 6 H 0.113 0.887 7 C -0.218 4.218 8 N -0.365 5.365 9 C 0.373 3.627 10 O -0.438 6.438 11 C -0.359 4.359 12 C 0.119 3.881 13 N -0.335 5.335 14 C 0.308 3.692 15 O -0.252 6.252 16 N -0.235 5.235 17 C -0.086 4.086 18 C 0.351 3.649 19 O -0.378 6.378 20 N -0.395 5.395 21 C -0.364 4.364 22 H 0.105 0.895 23 C -0.194 4.194 24 N -0.586 5.586 25 Si 0.719 3.281 26 H -0.213 1.213 27 H -0.219 1.219 28 H -0.205 1.205 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.259 0.741 38 H 0.206 0.794 39 H 0.307 0.693 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.194 0.806 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.554 14.430 -22.170 26.842 hybrid contribution 1.027 -1.223 0.435 1.655 sum 5.581 13.207 -21.735 26.038 Atomic orbital electron populations 1.22423 0.98904 1.00694 1.00437 1.20158 0.92102 0.95813 0.85061 0.92874 1.22187 1.01732 0.99298 0.94155 1.21039 0.98995 0.82073 0.94473 0.88706 1.22172 1.01506 1.00261 0.97886 1.46503 1.26434 1.08262 1.55332 1.17065 0.84757 0.82588 0.78279 1.90766 1.19032 1.84632 1.49335 1.21660 1.00086 1.00028 1.14097 1.23051 0.95214 0.83662 0.86159 1.68512 1.07951 1.27250 1.29779 1.20350 0.84486 0.82312 0.82043 1.84147 1.50726 1.19512 1.70810 1.46426 1.23650 1.11244 1.42201 1.22310 0.82775 1.04334 0.99228 1.17117 0.85215 0.80347 0.82269 1.90767 1.66045 1.38466 1.42542 1.42882 1.78884 1.11974 1.05747 1.19071 1.32082 0.99823 0.85451 0.89471 1.24685 1.01296 0.98002 0.95442 1.69723 1.50962 1.38916 0.98962 0.86485 0.79833 0.85316 0.76496 1.21323 1.21942 1.20460 0.93659 0.92709 0.93899 0.90781 0.91408 0.91678 0.92558 0.92670 0.74091 0.79408 0.69280 0.88053 0.88852 0.89193 0.80578 0.93252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 9.21 37.16 0.34 -2.93 16 2 C 0.18 3.72 2.90 -67.93 -0.20 3.53 16 3 H 0.05 1.21 7.51 -51.93 -0.39 0.82 16 4 C -0.14 -2.28 4.42 -26.73 -0.12 -2.40 16 5 C 0.14 2.14 2.53 -67.93 -0.17 1.97 16 6 H 0.10 1.56 5.69 -51.93 -0.30 1.27 16 7 C -0.16 -2.05 9.51 37.16 0.35 -1.70 16 8 N -0.71 -11.37 4.25 -55.05 -0.23 -11.60 16 9 C 0.59 9.33 7.73 -12.75 -0.10 9.23 16 10 O -0.56 -9.78 15.98 5.22 0.08 -9.70 16 11 C -0.35 -4.57 5.93 -104.44 -0.62 -5.18 16 12 C 0.26 2.68 10.83 -16.79 -0.18 2.50 16 13 N -0.59 -4.83 10.30 -13.97 -0.14 -4.97 16 14 C 0.61 4.35 8.60 -88.68 -0.76 3.58 16 15 O -0.45 -1.38 11.91 -15.82 -0.19 -1.57 16 16 N -0.51 -4.74 2.99 -128.29 -0.38 -5.13 16 17 C 0.05 0.38 10.10 59.85 0.60 0.98 16 18 C 0.55 7.21 7.47 -14.64 -0.11 7.10 16 19 O -0.50 -8.05 13.91 5.06 0.07 -7.98 16 20 N -0.75 -18.78 4.94 -53.43 -0.26 -19.05 16 21 C -0.23 -6.91 10.37 -15.06 -0.16 -7.07 16 22 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 23 C 0.00 0.02 5.50 -17.43 -0.10 -0.07 16 24 N -0.94 -30.31 13.97 55.49 0.78 -29.54 16 25 Si 0.89 22.94 28.01 -169.99 -4.76 18.18 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.29 -7.64 7.11 56.52 0.40 -7.23 16 28 H -0.28 -6.72 6.15 56.52 0.35 -6.37 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.04 0.77 6.52 -51.93 -0.34 0.43 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.41 7.01 5.32 -40.82 -0.22 6.80 16 38 H 0.19 1.65 7.70 -52.48 -0.40 1.25 16 39 H 0.44 -0.74 9.08 45.56 0.41 -0.33 16 40 H 0.10 0.42 6.77 -51.93 -0.35 0.07 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.36 8.81 5.50 -40.82 -0.22 8.59 16 44 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 LS Contribution 365.46 15.07 5.51 5.51 Total: -1.00 -38.06 365.46 -5.97 -44.03 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -5.22 Total: 12.26 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: -1.21 Total: 9.55 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -0.25 Total: -70.28 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.03 Total: -19.24 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.76 Total: 18.18 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -38.06 -5.97 -44.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135176454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.132 kcal (2) G-P(sol) polarization free energy of solvation -38.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds