Wall clock time and date at job start Fri Apr 10 2020 18:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46832 * 2 1 4 4 C 1.53001 * 109.46622 * 240.00786 * 2 1 3 5 5 C 1.53000 * 109.47437 * 65.58275 * 4 2 1 6 6 H 1.08997 * 109.46856 * 303.22844 * 5 4 2 7 7 C 1.53002 * 109.47130 * 183.23629 * 5 4 2 8 8 N 1.46497 * 109.47112 * 63.23312 * 5 4 2 9 9 C 1.34778 * 119.99587 * 208.86552 * 8 5 4 10 10 O 1.21666 * 120.00680 * 4.93351 * 9 8 5 11 11 C 1.46902 * 119.99464 * 184.92850 * 9 8 5 12 12 C 1.39432 * 120.81881 * 173.62865 * 11 9 8 13 13 N 1.32562 * 119.70150 * 179.72134 * 12 11 9 14 14 C 1.31848 * 121.61143 * 0.02562 * 13 12 11 15 15 O 1.34687 * 119.11079 * 179.97438 * 14 13 12 16 16 N 1.35658 * 121.77788 * 359.97438 * 14 13 12 17 17 C 1.46502 * 119.95649 * 180.02562 * 16 14 13 18 18 C 1.35021 * 120.08516 * 0.02562 * 16 14 13 19 19 O 1.21839 * 120.76225 * 180.02562 * 18 16 14 20 20 N 1.46494 * 109.47408 * 120.00627 * 2 1 3 21 21 C 1.36935 * 120.00000 * 279.07713 * 20 2 1 22 22 H 1.07996 * 119.99721 * 4.98128 * 21 20 2 23 23 C 1.38810 * 119.99955 * 184.97804 * 21 20 2 24 24 N 1.31624 * 119.99691 * 184.80506 * 23 21 20 25 25 Si 1.86800 * 120.00238 * 4.80332 * 23 21 20 26 26 H 1.48497 * 109.47161 * 94.50274 * 25 23 21 27 27 H 1.48504 * 109.47075 * 214.50778 * 25 23 21 28 28 H 1.48501 * 109.46686 * 334.50283 * 25 23 21 29 29 H 1.09004 * 109.47133 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47341 * 299.99466 * 1 2 3 31 31 H 1.09002 * 109.47412 * 59.99424 * 1 2 3 32 32 H 1.08996 * 109.47426 * 305.57705 * 4 2 1 33 33 H 1.09007 * 109.47176 * 185.58278 * 4 2 1 34 34 H 1.08991 * 109.47435 * 59.99586 * 7 5 4 35 35 H 1.09004 * 109.47317 * 180.02562 * 7 5 4 36 36 H 1.09007 * 109.47015 * 299.99749 * 7 5 4 37 37 H 0.96994 * 119.99959 * 28.86818 * 8 5 4 38 38 H 1.08006 * 120.14631 * 359.75212 * 12 11 9 39 39 H 0.96699 * 117.00460 * 359.97438 * 15 14 13 40 40 H 1.09002 * 109.46836 * 0.02562 * 17 16 14 41 41 H 1.08999 * 109.46872 * 120.00278 * 17 16 14 42 42 H 1.09000 * 109.47228 * 240.00232 * 17 16 14 43 43 H 0.96998 * 119.99848 * 99.07847 * 20 2 1 44 44 H 0.97003 * 119.99746 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6477 0.0767 -2.4946 6 1 0.5664 0.2134 -2.5128 7 6 2.0866 -0.6844 -3.7472 8 7 2.3049 1.3856 -2.4630 9 6 1.7258 2.4450 -3.0619 10 8 0.6169 2.3366 -3.5507 11 6 2.4336 3.7308 -3.1245 12 6 1.9109 4.7992 -3.8521 13 7 2.5654 5.9514 -3.8890 14 6 3.7076 6.1181 -3.2519 15 8 4.3303 7.3102 -3.3241 16 7 4.2726 5.1213 -2.5256 17 6 5.5430 5.3505 -1.8329 18 6 3.6656 3.9183 -2.4403 19 8 4.1618 3.0146 -1.7910 20 7 2.0184 -0.6907 1.1960 21 6 2.0703 -0.0306 2.3947 22 1 1.6768 0.9718 2.4765 23 6 2.6285 -0.6499 3.5044 24 7 2.5935 -0.0542 4.6776 25 14 3.4293 -2.3289 3.3330 26 1 4.8894 -2.1615 3.1206 27 1 3.1960 -3.1171 4.5698 28 1 2.8388 -3.0426 2.1724 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.5973 -1.7158 -1.3009 33 1 3.1254 -0.8086 -1.2009 34 1 1.5977 -1.6582 -3.7707 35 1 1.8076 -0.1158 -4.6343 36 1 3.1680 -0.8211 -3.7289 37 1 3.1568 1.4897 -2.0111 38 1 0.9768 4.6887 -4.3829 39 1 3.9010 7.9987 -3.8502 40 1 5.8775 6.3717 -2.0158 41 1 5.4054 5.1998 -0.7622 42 1 6.2912 4.6507 -2.2051 43 1 2.3050 -1.6156 1.1389 44 1 2.9840 -0.4868 5.4531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135176454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:18 Heat of formation + Delta-G solvation = -81.524656 kcal Electronic energy + Delta-G solvation = -28223.336950 eV Core-core repulsion = 24176.148271 eV Total energy + Delta-G solvation = -4047.188679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.16601 -40.84370 -39.81545 -38.53669 -37.94211 -36.41002 -36.17416 -34.04658 -32.60990 -31.45084 -30.61744 -29.09100 -27.66705 -26.25762 -25.51386 -24.92668 -22.92312 -22.00158 -21.23009 -20.53315 -20.00272 -19.73587 -18.72327 -18.07625 -17.36862 -17.16855 -16.87023 -16.65526 -16.16461 -15.83565 -15.73805 -15.45922 -15.30967 -15.10855 -14.67344 -14.52783 -14.36243 -14.30367 -13.96559 -13.55886 -13.52926 -13.37122 -13.09693 -12.99172 -12.82101 -12.73450 -12.24269 -12.06672 -11.92485 -11.84317 -11.64454 -11.53734 -11.44414 -11.36508 -10.99863 -10.89993 -10.00549 -9.60007 -9.31478 -8.02595 -5.35814 -0.76523 0.54289 0.61101 1.36442 1.42104 1.48908 1.66305 2.17663 2.38837 2.48738 2.57478 3.02521 3.23073 3.28068 3.44754 3.84251 3.98692 4.07252 4.13439 4.20282 4.25815 4.28180 4.45324 4.52342 4.56807 4.63343 4.69859 4.82329 4.85327 4.90882 4.94824 5.03949 5.08392 5.13909 5.31190 5.36411 5.49880 5.70085 5.76949 5.95871 6.21914 6.38080 6.53223 6.74634 7.08626 7.33794 7.84187 8.07103 9.19576 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.013029 B = 0.003620 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.575729 B = 7733.986806 C = 9005.996049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.174 3.826 3 H 0.026 0.974 4 C -0.122 4.122 5 C 0.140 3.860 6 H 0.084 0.916 7 C -0.150 4.150 8 N -0.713 5.713 9 C 0.582 3.418 10 O -0.583 6.583 11 C -0.389 4.389 12 C 0.293 3.707 13 N -0.587 5.587 14 C 0.623 3.377 15 O -0.431 6.431 16 N -0.511 5.511 17 C 0.052 3.948 18 C 0.547 3.453 19 O -0.545 6.545 20 N -0.751 5.751 21 C -0.229 4.229 22 H 0.045 0.955 23 C -0.066 4.066 24 N -0.986 5.986 25 Si 0.963 3.037 26 H -0.282 1.282 27 H -0.294 1.294 28 H -0.247 1.247 29 H 0.059 0.941 30 H 0.024 0.976 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.410 0.590 38 H 0.202 0.798 39 H 0.468 0.532 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.368 0.632 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.662 14.523 -24.867 29.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.066 3.934 3 H 0.044 0.956 4 C -0.161 4.161 5 C 0.035 3.965 6 H 0.102 0.898 7 C -0.209 4.209 8 N -0.372 5.372 9 C 0.370 3.630 10 O -0.467 6.467 11 C -0.400 4.400 12 C 0.144 3.856 13 N -0.328 5.328 14 C 0.326 3.674 15 O -0.232 6.232 16 N -0.237 5.237 17 C -0.088 4.088 18 C 0.348 3.652 19 O -0.424 6.424 20 N -0.395 5.395 21 C -0.360 4.360 22 H 0.063 0.937 23 C -0.257 4.257 24 N -0.637 5.637 25 Si 0.790 3.210 26 H -0.208 1.208 27 H -0.221 1.221 28 H -0.172 1.172 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.254 0.746 38 H 0.218 0.782 39 H 0.335 0.665 40 H 0.152 0.848 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.202 0.798 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.436 14.501 -24.704 29.157 hybrid contribution 0.758 -0.889 1.156 1.644 sum 6.194 13.611 -23.548 27.896 Atomic orbital electron populations 1.22272 0.97865 1.01394 0.99787 1.20296 0.92705 0.94824 0.85574 0.95553 1.22067 1.01680 0.99940 0.92398 1.21046 0.98369 0.82129 0.94965 0.89799 1.22086 1.02016 1.00694 0.96071 1.46623 1.26287 1.08775 1.55479 1.17451 0.84577 0.83382 0.77586 1.90726 1.20016 1.85252 1.50661 1.21453 1.01189 0.99964 1.17366 1.23263 0.95082 0.83174 0.84088 1.68653 1.08218 1.25993 1.29923 1.20465 0.83708 0.82975 0.80257 1.84182 1.50073 1.18318 1.70627 1.46307 1.24211 1.10795 1.42386 1.22493 0.81723 1.06317 0.98260 1.17119 0.85265 0.80979 0.81802 1.90723 1.67149 1.40119 1.44375 1.42826 1.79085 1.12221 1.05398 1.18957 1.31135 0.98445 0.87466 0.93707 1.25563 1.02342 1.02999 0.94807 1.69915 1.52456 1.41333 1.00003 0.85283 0.78615 0.79711 0.77390 1.20808 1.22096 1.17155 0.92171 0.95707 0.92171 0.88572 0.91396 0.89635 0.92824 0.92105 0.74619 0.78166 0.66453 0.84760 0.90185 0.89043 0.79780 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.13 9.21 71.98 0.66 -5.46 16 2 C 0.17 7.36 2.90 44.99 0.13 7.49 16 3 H 0.03 1.26 7.51 -2.39 -0.02 1.24 16 4 C -0.12 -3.98 4.42 30.59 0.14 -3.85 16 5 C 0.14 4.22 2.53 44.99 0.11 4.33 16 6 H 0.08 2.72 5.69 -2.39 -0.01 2.70 16 7 C -0.15 -3.60 9.51 71.98 0.68 -2.91 16 8 N -0.71 -23.52 4.25 -446.30 -1.89 -25.42 16 9 C 0.58 18.99 7.73 86.51 0.67 19.66 16 10 O -0.58 -20.81 15.98 -4.24 -0.07 -20.88 16 11 C -0.39 -10.35 5.93 -19.75 -0.12 -10.47 16 12 C 0.29 5.63 10.83 84.87 0.92 6.54 16 13 N -0.59 -8.20 10.30 -311.73 -3.21 -11.41 16 14 C 0.62 7.40 8.60 179.67 1.55 8.94 16 15 O -0.43 -0.95 11.91 -79.52 -0.95 -1.89 16 16 N -0.51 -9.06 2.99 -789.41 -2.36 -11.42 16 17 C 0.05 0.67 10.10 127.77 1.29 1.96 16 18 C 0.55 14.65 7.47 85.18 0.64 15.28 16 19 O -0.54 -18.35 13.91 -4.79 -0.07 -18.42 16 20 N -0.75 -37.54 4.94 -322.96 -1.60 -39.14 16 21 C -0.23 -13.93 10.37 84.03 0.87 -13.06 16 22 H 0.04 3.04 8.06 -2.91 -0.02 3.02 16 23 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 24 N -0.99 -65.71 13.97 21.65 0.30 -65.41 16 25 Si 0.96 47.28 28.01 68.60 1.92 49.21 16 26 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 27 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 28 H -0.25 -10.75 6.15 99.48 0.61 -10.14 16 29 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 2.18 6.52 -2.39 -0.02 2.16 16 32 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.06 1.38 8.14 -2.38 -0.02 1.37 16 37 H 0.41 14.47 5.32 -92.71 -0.49 13.98 16 38 H 0.20 3.28 7.70 -2.91 -0.02 3.26 16 39 H 0.47 -3.65 9.08 -74.06 -0.67 -4.33 16 40 H 0.13 0.74 6.77 -2.39 -0.02 0.73 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.37 17.27 5.50 -92.71 -0.51 16.76 16 44 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 Total: -1.00 -86.25 365.46 -0.62 -86.88 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: -0.70 Total: 33.07 kcal Atomic # 6 Polarization: 16.83 SS G_CDS: 8.01 Total: 24.84 kcal Atomic # 7 Polarization: -144.04 SS G_CDS: -8.76 Total: -152.80 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -1.08 Total: -41.19 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.92 Total: 49.21 kcal Total: -86.25 -0.62 -86.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135176454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.352 kcal (2) G-P(sol) polarization free energy of solvation -86.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds