Wall clock time and date at job start Fri Apr 10 2020 18:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47127 * 2 1 4 4 C 1.53003 * 109.47356 * 239.99978 * 2 1 3 5 5 C 1.53000 * 109.47103 * 174.99906 * 4 2 1 6 6 H 1.09001 * 109.47000 * 304.99983 * 5 4 2 7 7 C 1.52997 * 109.46731 * 185.00125 * 5 4 2 8 8 N 1.46498 * 109.47269 * 65.00338 * 5 4 2 9 9 C 1.36934 * 119.99931 * 205.00041 * 8 5 4 10 10 H 1.07993 * 119.99991 * 359.97438 * 9 8 5 11 11 C 1.38814 * 119.99688 * 179.97438 * 9 8 5 12 12 N 1.31619 * 120.00343 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99669 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46945 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46980 * 119.99983 * 13 11 9 16 16 H 1.48501 * 109.46828 * 239.99995 * 13 11 9 17 17 N 1.46501 * 109.46938 * 120.00151 * 2 1 3 18 18 C 1.34777 * 120.00008 * 274.99934 * 17 2 1 19 19 O 1.21677 * 119.99938 * 354.73458 * 18 17 2 20 20 C 1.46892 * 120.00386 * 174.74007 * 18 17 2 21 21 C 1.39432 * 120.81956 * 4.90677 * 20 18 17 22 22 N 1.32561 * 119.70439 * 180.02562 * 21 20 18 23 23 C 1.31847 * 121.61220 * 0.02562 * 22 21 20 24 24 O 1.34683 * 119.11827 * 179.97438 * 23 22 21 25 25 N 1.35656 * 121.77381 * 0.02562 * 23 22 21 26 26 C 1.46505 * 119.95664 * 180.02562 * 25 23 22 27 27 C 1.35026 * 120.09017 * 359.70712 * 25 23 22 28 28 O 1.21835 * 120.76853 * 180.28225 * 27 25 23 29 29 H 1.09010 * 109.46692 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47245 * 299.99873 * 1 2 3 31 31 H 1.08997 * 109.47126 * 60.00189 * 1 2 3 32 32 H 1.09006 * 109.46549 * 54.99855 * 4 2 1 33 33 H 1.09002 * 109.47204 * 295.00045 * 4 2 1 34 34 H 1.09007 * 109.46824 * 179.97438 * 7 5 4 35 35 H 1.08993 * 109.47418 * 299.99979 * 7 5 4 36 36 H 1.09005 * 109.47123 * 60.00443 * 7 5 4 37 37 H 0.97001 * 119.99504 * 24.99341 * 8 5 4 38 38 H 0.96994 * 120.00074 * 180.02562 * 12 11 9 39 39 H 0.97000 * 120.00025 * 95.00847 * 17 2 1 40 40 H 1.07997 * 120.15015 * 0.03220 * 21 20 18 41 41 H 0.96706 * 116.99630 * 359.97438 * 24 23 22 42 42 H 1.09007 * 109.46895 * 359.97438 * 26 25 23 43 43 H 1.08992 * 109.47500 * 119.99908 * 26 25 23 44 44 H 1.09002 * 109.47269 * 239.99898 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2249 -2.6240 8 7 4.1538 -1.3342 -0.1824 9 6 5.3944 -0.9855 0.2806 10 1 5.9389 -0.1794 -0.1883 11 6 5.9521 -1.6683 1.3529 12 7 5.2887 -2.6511 1.9241 13 14 7.6448 -1.1931 1.9841 14 1 8.1760 -0.0661 1.1761 15 1 7.5441 -0.7777 3.4063 16 1 8.5597 -2.3575 1.8721 17 7 2.0183 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3572 19 8 1.9500 1.1819 2.3902 20 6 2.5253 -0.7344 3.5826 21 6 2.8540 -2.0890 3.5459 22 7 3.1917 -2.7135 4.6653 23 6 3.2257 -2.0853 5.8240 24 8 3.5754 -2.7691 6.9303 25 7 2.9170 -0.7687 5.9320 26 6 2.9685 -0.1102 7.2397 27 6 2.5685 -0.0629 4.8350 28 8 2.2938 1.1213 4.9170 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -0.2617 -2.1370 33 1 1.7517 -1.7715 -1.2056 34 1 5.1509 -1.1476 -2.6701 35 1 3.7723 -2.2740 -2.6699 36 1 3.6264 -0.6885 -3.4657 37 1 3.6647 -2.0584 0.2386 38 1 5.6783 -3.1279 2.6736 39 1 2.2491 -1.6318 1.1526 40 1 2.8337 -2.6269 2.6097 41 1 3.7882 -3.7059 6.8185 42 1 3.2716 -0.8319 7.9983 43 1 3.6889 0.7071 7.2069 44 1 1.9828 0.2841 7.4871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135176455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:23 Heat of formation + Delta-G solvation = -45.614708 kcal Electronic energy + Delta-G solvation = -29559.407466 eV Core-core repulsion = 25513.775959 eV Total energy + Delta-G solvation = -4045.631507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.53525 -39.12976 -38.33346 -36.56922 -36.49612 -34.81996 -34.03261 -32.28154 -31.03641 -29.50844 -28.49604 -27.75530 -26.28048 -24.67785 -23.72340 -23.28563 -21.54105 -20.19823 -19.79249 -19.02724 -18.28189 -17.45705 -17.19476 -16.58364 -15.68464 -15.65537 -15.31037 -14.81122 -14.35925 -14.26126 -14.02808 -13.82079 -13.72385 -13.20335 -13.04871 -12.96909 -12.74483 -12.56441 -12.50794 -12.09656 -11.83689 -11.70956 -11.63229 -11.60387 -10.99542 -10.85445 -10.73136 -10.32210 -10.29650 -10.23126 -9.98736 -9.88084 -9.73232 -9.62627 -8.99284 -8.86866 -8.21447 -7.85223 -6.96287 -5.87613 -3.06998 0.82473 1.98683 2.30950 3.38653 3.44938 3.46042 3.47987 3.48419 4.01019 4.40320 4.50593 4.55714 4.80230 5.17204 5.25089 5.26608 5.46098 5.51630 5.56488 5.58134 5.65660 5.75523 5.84376 5.92839 5.96139 6.06026 6.06355 6.19772 6.27952 6.33377 6.42045 6.51365 6.60532 6.66481 6.81612 6.88574 7.07561 7.15330 7.36423 7.66559 8.01137 8.22815 8.32820 8.40914 9.20932 9.45293 9.98118 10.33930 11.35634 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.010828 B = 0.006148 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.328787 B = 4553.338283 C = 6152.818820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.152 3.848 3 H 0.084 0.916 4 C -0.133 4.133 5 C 0.167 3.833 6 H 0.049 0.951 7 C -0.162 4.162 8 N -0.713 5.713 9 C -0.209 4.209 10 H 0.069 0.931 11 C -0.015 4.015 12 N -0.926 5.926 13 Si 0.900 3.100 14 H -0.283 1.283 15 H -0.297 1.297 16 H -0.293 1.293 17 N -0.703 5.703 18 C 0.595 3.405 19 O -0.543 6.543 20 C -0.350 4.350 21 C 0.279 3.721 22 N -0.577 5.577 23 C 0.589 3.411 24 O -0.465 6.465 25 N -0.517 5.517 26 C 0.062 3.938 27 C 0.553 3.447 28 O -0.499 6.499 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.036 0.964 37 H 0.376 0.624 38 H 0.256 0.744 39 H 0.397 0.603 40 H 0.184 0.816 41 H 0.440 0.560 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.856 -4.089 5.090 10.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 H 0.102 0.898 4 C -0.171 4.171 5 C 0.058 3.942 6 H 0.067 0.933 7 C -0.223 4.223 8 N -0.356 5.356 9 C -0.340 4.340 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.576 5.576 13 Si 0.733 3.267 14 H -0.208 1.208 15 H -0.224 1.224 16 H -0.221 1.221 17 N -0.357 5.357 18 C 0.382 3.618 19 O -0.421 6.421 20 C -0.361 4.361 21 C 0.134 3.866 22 N -0.317 5.317 23 C 0.289 3.711 24 O -0.263 6.263 25 N -0.247 5.247 26 C -0.080 4.080 27 C 0.353 3.647 28 O -0.373 6.373 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.211 0.789 38 H 0.066 0.934 39 H 0.235 0.765 40 H 0.200 0.800 41 H 0.301 0.699 42 H 0.114 0.886 43 H 0.100 0.900 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.896 -2.624 5.416 9.928 hybrid contribution 1.312 -0.438 0.484 1.465 sum -6.584 -3.062 5.900 9.356 Atomic orbital electron populations 1.22216 0.96461 1.01508 1.01857 1.20748 0.92318 0.97890 0.84349 0.89826 1.22203 0.97579 1.00592 0.96757 1.20317 0.89899 0.95949 0.88039 0.93257 1.22405 1.01467 1.00340 0.98041 1.42478 1.18554 1.39750 1.34776 1.19334 0.92812 1.12196 1.09681 0.91318 1.24508 0.98486 0.99012 0.99039 1.69448 1.37677 1.24449 1.25991 0.86188 0.84708 0.77404 0.78412 1.20793 1.22412 1.22062 1.45751 1.67446 1.13920 1.08545 1.16930 0.76339 0.86288 0.82213 1.90766 1.51527 1.13945 1.85841 1.21334 1.23933 0.96002 0.94848 1.23068 0.78660 0.90433 0.94467 1.68377 1.30465 1.36041 0.96847 1.20406 0.83819 0.80640 0.86208 1.84063 1.81788 1.30923 1.29524 1.46562 1.58067 1.07448 1.12636 1.22073 1.04366 0.99271 0.82266 1.16879 0.78518 0.86957 0.82344 1.90940 1.49147 1.13480 1.83724 0.92868 0.92458 0.92243 0.90825 0.91767 0.92927 0.93573 0.94529 0.78865 0.93404 0.76510 0.79980 0.69872 0.88586 0.90016 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.48 37.16 0.35 -1.94 16 2 C 0.15 2.55 2.62 -67.93 -0.18 2.37 16 3 H 0.08 1.62 7.51 -51.93 -0.39 1.23 16 4 C -0.13 -1.98 4.43 -26.73 -0.12 -2.10 16 5 C 0.17 3.08 2.89 -67.93 -0.20 2.88 16 6 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 7 C -0.16 -2.72 9.49 37.16 0.35 -2.37 16 8 N -0.71 -15.61 3.84 -53.43 -0.21 -15.82 16 9 C -0.21 -5.34 9.93 -15.06 -0.15 -5.49 16 10 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 11 C -0.02 -0.40 5.50 -17.43 -0.10 -0.50 16 12 N -0.93 -23.29 11.29 55.49 0.63 -22.66 16 13 Si 0.90 21.97 29.55 -169.99 -5.02 16.95 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 17 N -0.70 -13.21 3.75 -55.04 -0.21 -13.42 16 18 C 0.59 13.29 7.70 -12.76 -0.10 13.19 16 19 O -0.54 -14.06 15.08 -15.88 -0.24 -14.30 16 20 C -0.35 -7.34 5.93 -104.44 -0.62 -7.95 16 21 C 0.28 5.18 9.61 -16.79 -0.16 5.02 16 22 N -0.58 -9.40 10.30 -13.98 -0.14 -9.55 16 23 C 0.59 8.48 8.60 -88.68 -0.76 7.72 16 24 O -0.46 -4.40 11.91 -15.81 -0.19 -4.59 16 25 N -0.52 -8.36 2.99 -128.28 -0.38 -8.74 16 26 C 0.06 0.75 10.10 59.85 0.60 1.36 16 27 C 0.55 11.56 7.47 -14.64 -0.11 11.45 16 28 O -0.50 -11.98 15.51 -16.02 -0.25 -12.23 16 29 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.97 8.14 -51.92 -0.42 0.54 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.38 8.26 5.70 -40.82 -0.23 8.02 16 38 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 39 H 0.40 7.18 4.61 -40.82 -0.19 6.99 16 40 H 0.18 3.39 5.92 -52.49 -0.31 3.08 16 41 H 0.44 2.21 9.08 45.56 0.41 2.63 16 42 H 0.10 0.87 6.77 -51.92 -0.35 0.52 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 364.53 15.07 5.49 5.49 Total: -1.00 -34.01 364.53 -6.95 -40.96 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -5.25 Total: 14.26 kcal Atomic # 6 Polarization: 24.82 SS G_CDS: -1.18 Total: 23.64 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -0.31 Total: -70.19 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.68 Total: -31.12 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.01 -6.95 -40.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135176455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.651 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds