Wall clock time and date at job start Fri Apr 10 2020 18:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47127 * 2 1 4 4 C 1.53003 * 109.47356 * 239.99978 * 2 1 3 5 5 C 1.53000 * 109.47103 * 174.99906 * 4 2 1 6 6 H 1.09001 * 109.47000 * 304.99983 * 5 4 2 7 7 C 1.52997 * 109.46731 * 185.00125 * 5 4 2 8 8 N 1.46498 * 109.47269 * 65.00338 * 5 4 2 9 9 C 1.36934 * 119.99931 * 205.00041 * 8 5 4 10 10 H 1.07993 * 119.99991 * 359.97438 * 9 8 5 11 11 C 1.38814 * 119.99688 * 179.97438 * 9 8 5 12 12 N 1.31619 * 120.00343 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99669 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46945 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46980 * 119.99983 * 13 11 9 16 16 H 1.48501 * 109.46828 * 239.99995 * 13 11 9 17 17 N 1.46501 * 109.46938 * 120.00151 * 2 1 3 18 18 C 1.34777 * 120.00008 * 274.99934 * 17 2 1 19 19 O 1.21677 * 119.99938 * 354.73458 * 18 17 2 20 20 C 1.46892 * 120.00386 * 174.74007 * 18 17 2 21 21 C 1.39432 * 120.81956 * 4.90677 * 20 18 17 22 22 N 1.32561 * 119.70439 * 180.02562 * 21 20 18 23 23 C 1.31847 * 121.61220 * 0.02562 * 22 21 20 24 24 O 1.34683 * 119.11827 * 179.97438 * 23 22 21 25 25 N 1.35656 * 121.77381 * 0.02562 * 23 22 21 26 26 C 1.46505 * 119.95664 * 180.02562 * 25 23 22 27 27 C 1.35026 * 120.09017 * 359.70712 * 25 23 22 28 28 O 1.21835 * 120.76853 * 180.28225 * 27 25 23 29 29 H 1.09010 * 109.46692 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47245 * 299.99873 * 1 2 3 31 31 H 1.08997 * 109.47126 * 60.00189 * 1 2 3 32 32 H 1.09006 * 109.46549 * 54.99855 * 4 2 1 33 33 H 1.09002 * 109.47204 * 295.00045 * 4 2 1 34 34 H 1.09007 * 109.46824 * 179.97438 * 7 5 4 35 35 H 1.08993 * 109.47418 * 299.99979 * 7 5 4 36 36 H 1.09005 * 109.47123 * 60.00443 * 7 5 4 37 37 H 0.97001 * 119.99504 * 24.99341 * 8 5 4 38 38 H 0.96994 * 120.00074 * 180.02562 * 12 11 9 39 39 H 0.97000 * 120.00025 * 95.00847 * 17 2 1 40 40 H 1.07997 * 120.15015 * 0.03220 * 21 20 18 41 41 H 0.96706 * 116.99630 * 359.97438 * 24 23 22 42 42 H 1.09007 * 109.46895 * 359.97438 * 26 25 23 43 43 H 1.08992 * 109.47500 * 119.99908 * 26 25 23 44 44 H 1.09002 * 109.47269 * 239.99898 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2249 -2.6240 8 7 4.1538 -1.3342 -0.1824 9 6 5.3944 -0.9855 0.2806 10 1 5.9389 -0.1794 -0.1883 11 6 5.9521 -1.6683 1.3529 12 7 5.2887 -2.6511 1.9241 13 14 7.6448 -1.1931 1.9841 14 1 8.1760 -0.0661 1.1761 15 1 7.5441 -0.7777 3.4063 16 1 8.5597 -2.3575 1.8721 17 7 2.0183 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3572 19 8 1.9500 1.1819 2.3902 20 6 2.5253 -0.7344 3.5826 21 6 2.8540 -2.0890 3.5459 22 7 3.1917 -2.7135 4.6653 23 6 3.2257 -2.0853 5.8240 24 8 3.5754 -2.7691 6.9303 25 7 2.9170 -0.7687 5.9320 26 6 2.9685 -0.1102 7.2397 27 6 2.5685 -0.0629 4.8350 28 8 2.2938 1.1213 4.9170 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -0.2617 -2.1370 33 1 1.7517 -1.7715 -1.2056 34 1 5.1509 -1.1476 -2.6701 35 1 3.7723 -2.2740 -2.6699 36 1 3.6264 -0.6885 -3.4657 37 1 3.6647 -2.0584 0.2386 38 1 5.6783 -3.1279 2.6736 39 1 2.2491 -1.6318 1.1526 40 1 2.8337 -2.6269 2.6097 41 1 3.7882 -3.7059 6.8185 42 1 3.2716 -0.8319 7.9983 43 1 3.6889 0.7071 7.2069 44 1 1.9828 0.2841 7.4871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135176455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:22 Heat of formation + Delta-G solvation = -72.099148 kcal Electronic energy + Delta-G solvation = -29560.555918 eV Core-core repulsion = 25513.775959 eV Total energy + Delta-G solvation = -4046.779958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.92091 -40.62189 -39.67015 -38.13373 -37.83671 -36.20322 -35.67521 -33.99338 -32.57337 -31.02333 -30.07603 -28.92404 -27.54923 -26.02719 -25.54571 -24.70811 -22.94274 -21.67471 -21.28572 -20.22904 -19.66760 -19.06093 -18.88779 -17.89648 -17.16371 -17.02848 -16.75841 -16.55625 -15.87271 -15.65166 -15.46953 -15.39985 -15.27567 -14.73688 -14.36053 -14.34306 -14.21184 -14.04468 -13.55252 -13.49751 -13.28438 -13.16392 -12.91702 -12.86359 -12.75707 -12.58334 -12.25019 -12.12491 -11.85975 -11.66407 -11.57624 -11.35922 -11.28585 -11.15838 -10.85173 -10.55174 -9.82397 -9.35838 -8.74896 -7.82989 -5.00807 -0.53704 0.75720 0.80933 1.40585 1.45500 1.50397 1.91993 2.25741 2.57546 2.62201 2.85820 3.23921 3.49087 3.51428 3.87320 4.04052 4.08280 4.19690 4.23271 4.27938 4.42861 4.49246 4.58806 4.62895 4.72197 4.75312 4.88203 4.92627 4.97566 5.02453 5.13387 5.19237 5.22362 5.39997 5.41871 5.48554 5.64648 5.68784 5.88971 6.10778 6.42183 6.68796 6.71804 6.84391 7.50513 7.58620 8.20027 8.49714 9.38477 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.010828 B = 0.006148 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.328787 B = 4553.338283 C = 6152.818820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.146 3.854 3 H 0.049 0.951 4 C -0.117 4.117 5 C 0.160 3.840 6 H 0.023 0.977 7 C -0.151 4.151 8 N -0.716 5.716 9 C -0.221 4.221 10 H 0.049 0.951 11 C -0.046 4.046 12 N -0.926 5.926 13 Si 0.933 3.067 14 H -0.290 1.290 15 H -0.310 1.310 16 H -0.290 1.290 17 N -0.690 5.690 18 C 0.586 3.414 19 O -0.593 6.593 20 C -0.391 4.391 21 C 0.308 3.692 22 N -0.582 5.582 23 C 0.610 3.390 24 O -0.435 6.435 25 N -0.517 5.517 26 C 0.057 3.943 27 C 0.546 3.454 28 O -0.544 6.544 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.027 0.973 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.376 0.624 38 H 0.252 0.748 39 H 0.402 0.598 40 H 0.183 0.817 41 H 0.463 0.537 42 H 0.133 0.867 43 H 0.075 0.925 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.717 -6.395 5.455 12.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 H 0.068 0.932 4 C -0.156 4.156 5 C 0.052 3.948 6 H 0.042 0.958 7 C -0.211 4.211 8 N -0.359 5.359 9 C -0.353 4.353 10 H 0.067 0.933 11 C -0.240 4.240 12 N -0.576 5.576 13 Si 0.767 3.233 14 H -0.216 1.216 15 H -0.239 1.239 16 H -0.217 1.217 17 N -0.343 5.343 18 C 0.375 3.625 19 O -0.475 6.475 20 C -0.402 4.402 21 C 0.160 3.840 22 N -0.323 5.323 23 C 0.312 3.688 24 O -0.236 6.236 25 N -0.245 5.245 26 C -0.084 4.084 27 C 0.347 3.653 28 O -0.422 6.422 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.105 0.895 32 H 0.127 0.873 33 H 0.101 0.899 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.211 0.789 38 H 0.062 0.938 39 H 0.240 0.760 40 H 0.199 0.801 41 H 0.330 0.670 42 H 0.152 0.848 43 H 0.094 0.906 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.753 -5.021 5.830 11.654 hybrid contribution 1.584 0.199 0.550 1.689 sum -7.169 -4.822 6.380 10.741 Atomic orbital electron populations 1.22109 0.93898 1.02902 1.01985 1.20935 0.94281 0.96235 0.84437 0.93227 1.22120 0.94707 1.01778 0.96950 1.20500 0.92263 0.94243 0.87805 0.95848 1.22242 0.99971 1.00983 0.97906 1.42447 1.17545 1.40019 1.35850 1.19280 0.94286 1.11801 1.09948 0.93251 1.24828 0.99776 0.99747 0.99669 1.69487 1.37613 1.24487 1.26009 0.85686 0.83717 0.76904 0.77012 1.21570 1.23865 1.21728 1.45744 1.66331 1.13902 1.08324 1.17309 0.75845 0.85913 0.83479 1.90720 1.54129 1.15963 1.86686 1.21366 1.26899 0.97138 0.94801 1.23036 0.76402 0.89225 0.95375 1.68458 1.31117 1.35823 0.96864 1.20494 0.81331 0.80294 0.86724 1.84105 1.80227 1.32650 1.26582 1.46418 1.56932 1.08143 1.13040 1.22401 1.05006 1.00126 0.80844 1.16938 0.78327 0.86630 0.83442 1.90899 1.51288 1.15251 1.84753 0.90738 0.94970 0.89498 0.87313 0.89877 0.95355 0.92886 0.91409 0.78903 0.93835 0.75986 0.80053 0.66998 0.84830 0.90604 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.48 71.98 0.68 -3.36 16 2 C 0.15 4.85 2.62 44.99 0.12 4.97 16 3 H 0.05 2.01 7.51 -2.39 -0.02 1.99 16 4 C -0.12 -3.25 4.43 30.60 0.14 -3.11 16 5 C 0.16 5.80 2.89 44.99 0.13 5.93 16 6 H 0.02 0.97 8.08 -2.39 -0.02 0.95 16 7 C -0.15 -4.81 9.49 71.98 0.68 -4.12 16 8 N -0.72 -31.45 3.84 -322.95 -1.24 -32.69 16 9 C -0.22 -11.50 9.93 84.03 0.83 -10.66 16 10 H 0.05 2.71 7.83 -2.91 -0.02 2.69 16 11 C -0.05 -2.39 5.50 84.86 0.47 -1.93 16 12 N -0.93 -46.16 11.29 21.65 0.24 -45.92 16 13 Si 0.93 45.49 29.55 68.60 2.03 47.51 16 14 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 15 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 16 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 17 N -0.69 -26.34 3.75 -446.28 -1.67 -28.02 16 18 C 0.59 27.25 7.70 86.51 0.67 27.92 16 19 O -0.59 -32.57 15.08 15.89 0.24 -32.33 16 20 C -0.39 -16.74 5.93 -19.75 -0.12 -16.86 16 21 C 0.31 11.25 9.61 84.87 0.82 12.06 16 22 N -0.58 -17.79 10.30 -311.75 -3.21 -21.00 16 23 C 0.61 15.94 8.60 179.67 1.55 17.49 16 24 O -0.44 -6.28 11.91 -79.48 -0.95 -7.22 16 25 N -0.52 -16.07 2.99 -789.41 -2.36 -18.43 16 26 C 0.06 1.26 10.10 127.77 1.29 2.55 16 27 C 0.55 23.26 7.47 85.18 0.64 23.90 16 28 O -0.54 -27.27 15.51 15.38 0.24 -27.03 16 29 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 34 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.38 16.33 5.70 -92.71 -0.53 15.80 16 38 H 0.25 12.53 8.31 -92.71 -0.77 11.76 16 39 H 0.40 14.43 4.61 -92.71 -0.43 14.01 16 40 H 0.18 6.64 5.92 -2.91 -0.02 6.63 16 41 H 0.46 2.32 9.08 -74.05 -0.67 1.64 16 42 H 0.13 1.90 6.77 -2.38 -0.02 1.89 16 43 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 44 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -78.63 364.53 0.63 -78.00 By element: Atomic # 1 Polarization: 32.92 SS G_CDS: -0.57 Total: 32.35 kcal Atomic # 6 Polarization: 46.89 SS G_CDS: 7.89 Total: 54.77 kcal Atomic # 7 Polarization: -137.81 SS G_CDS: -8.25 Total: -146.05 kcal Atomic # 8 Polarization: -66.12 SS G_CDS: -0.47 Total: -66.59 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -78.63 0.63 -78.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135176455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.901 kcal (2) G-P(sol) polarization free energy of solvation -78.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds