Wall clock time and date at job start Fri Apr 10 2020 18:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.47012 * 2 1 4 4 C 1.50696 * 109.46937 * 119.99822 * 2 1 3 5 5 O 1.33501 * 126.82966 * 300.02147 * 4 2 1 6 6 N 1.20653 * 113.15763 * 179.97438 * 5 4 2 7 7 C 1.30020 * 112.30194 * 359.72293 * 6 5 4 8 8 C 1.37355 * 126.83228 * 120.00319 * 4 2 1 9 9 C 1.47402 * 128.56099 * 359.97438 * 8 4 2 10 10 O 1.21603 * 120.00063 * 0.02562 * 9 8 4 11 11 N 1.34777 * 119.99679 * 179.97438 * 9 8 4 12 12 C 1.46499 * 119.99665 * 179.72400 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 N 1.46898 * 109.46947 * 180.02562 * 13 12 11 15 15 C 1.46904 * 110.99459 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46807 * 179.97438 * 15 14 13 17 17 O 1.21290 * 120.00074 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99911 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00169 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00091 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00239 * 180.02562 * 19 18 16 22 22 N 1.31410 * 119.99808 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 119.99774 * 0.02562 * 21 19 18 24 24 H 1.48507 * 109.47023 * 90.00269 * 23 21 19 25 25 H 1.48501 * 109.47015 * 209.99701 * 23 21 19 26 26 H 1.48493 * 109.47451 * 330.00067 * 23 21 19 27 27 H 1.09006 * 109.46789 * 60.00017 * 1 2 3 28 28 H 1.09002 * 109.46942 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46944 * 300.00339 * 1 2 3 30 30 H 1.09001 * 109.47397 * 239.99943 * 2 1 3 31 31 H 1.08999 * 109.46975 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46623 * 299.99464 * 3 2 1 33 33 H 1.09001 * 109.47086 * 59.99753 * 3 2 1 34 34 H 1.07998 * 127.33830 * 180.30130 * 7 6 5 35 35 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 36 36 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 37 37 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 38 38 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 39 39 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 40 40 H 1.00894 * 111.00658 * 56.04933 * 14 13 12 41 41 H 1.08992 * 109.47591 * 299.99636 * 15 14 13 42 42 H 1.09001 * 109.47600 * 60.00212 * 15 14 13 43 43 H 0.97001 * 120.00445 * 0.02562 * 18 16 15 44 44 H 0.97007 * 119.99691 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7950 -0.3754 2.5008 6 7 2.3198 -1.1184 3.2934 7 6 2.9862 -2.0707 2.7106 8 6 2.8251 -1.8314 1.2681 9 6 3.3732 -2.6074 0.1411 10 8 3.1346 -2.2700 -1.0025 11 7 4.1397 -3.6903 0.3783 12 6 4.6795 -4.4651 -0.7418 13 6 5.5022 -5.6368 -0.2020 14 7 6.0440 -6.4132 -1.3251 15 6 6.8419 -7.5488 -0.8436 16 6 7.3793 -8.3204 -2.0213 17 8 7.1232 -7.9595 -3.1506 18 7 8.1453 -9.4108 -1.8197 19 6 8.6338 -10.1130 -2.8910 20 1 8.4051 -9.7922 -3.8966 21 6 9.4231 -11.2375 -2.6832 22 7 9.8917 -11.9103 -3.7102 23 14 9.8181 -11.7928 -0.9440 24 1 8.7765 -12.7440 -0.4795 25 1 11.1431 -12.4630 -0.9272 26 1 9.8486 -10.6132 -0.0426 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8900 34 1 3.5414 -2.8666 3.1845 35 1 4.3304 -3.9593 1.2905 36 1 3.8585 -4.8468 -1.3488 37 1 5.3162 -3.8252 -1.3529 38 1 6.3232 -5.2551 0.4049 39 1 4.8656 -6.2767 0.4091 40 1 6.5857 -5.8269 -1.9422 41 1 7.6719 -7.1801 -0.2411 42 1 6.2149 -8.2024 -0.2371 43 1 8.3505 -9.6992 -0.9166 44 1 10.4431 -12.6951 -3.5650 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146441535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:57 Heat of formation + Delta-G solvation = -13.635997 kcal Electronic energy + Delta-G solvation = -25968.687530 eV Core-core repulsion = 21924.442725 eV Total energy + Delta-G solvation = -4044.244806 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.37615 -39.93626 -38.54881 -36.73022 -36.20834 -34.60882 -34.10570 -33.78031 -31.70385 -31.36951 -29.62752 -27.67552 -26.55944 -25.02007 -24.05529 -23.43681 -22.28500 -21.35626 -20.65698 -19.43909 -18.47485 -18.20809 -18.13275 -16.84401 -16.37261 -16.33226 -15.94545 -15.49831 -15.31183 -15.08956 -14.87837 -14.32210 -14.09989 -14.06320 -13.78593 -13.70801 -13.46861 -13.11432 -12.70004 -12.62323 -12.34830 -12.28673 -11.96175 -11.91890 -11.78857 -11.64428 -11.60465 -11.30592 -11.18426 -10.87835 -10.62778 -10.40437 -10.00383 -9.94042 -9.60685 -9.41158 -8.67448 -8.29347 -8.20798 -6.33778 -3.85466 0.62506 1.33297 2.28808 2.75498 2.82268 2.99182 3.04163 3.12599 3.69131 3.72393 3.79077 4.06022 4.07543 4.13573 4.36872 4.54318 4.57459 4.72408 4.75030 4.83936 4.96782 5.09193 5.13995 5.18592 5.24537 5.29643 5.31260 5.35541 5.51436 5.54866 5.67759 5.71395 5.71613 5.76169 5.80988 5.87818 6.02942 6.90344 7.05755 7.41991 7.54676 7.69683 7.78680 8.11295 8.56278 8.91937 9.39041 9.78584 10.79247 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.031414 B = 0.001705 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.117346 B =16420.491435 C =17107.865284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.031 4.031 3 C -0.148 4.148 4 C 0.063 3.937 5 O 0.094 5.906 6 N -0.353 5.353 7 C 0.022 3.978 8 C -0.266 4.266 9 C 0.600 3.400 10 O -0.529 6.529 11 N -0.719 5.719 12 C 0.121 3.879 13 C 0.049 3.951 14 N -0.665 5.665 15 C 0.050 3.950 16 C 0.448 3.552 17 O -0.563 6.563 18 N -0.589 5.589 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.880 5.880 23 Si 0.881 3.119 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.270 1.270 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.130 0.870 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.201 0.799 35 H 0.400 0.600 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.078 0.922 40 H 0.354 0.646 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.370 0.630 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.219 23.256 16.175 32.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.050 4.050 3 C -0.206 4.206 4 C -0.002 4.002 5 O 0.035 5.965 6 N -0.058 5.058 7 C -0.161 4.161 8 C -0.274 4.274 9 C 0.386 3.614 10 O -0.406 6.406 11 N -0.370 5.370 12 C -0.003 4.003 13 C -0.081 4.081 14 N -0.298 5.298 15 C -0.083 4.083 16 C 0.234 3.766 17 O -0.445 6.445 18 N -0.229 5.229 19 C -0.435 4.435 20 H 0.138 0.862 21 C -0.162 4.162 22 N -0.520 5.520 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.148 0.852 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.218 0.782 35 H 0.234 0.766 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.052 0.948 39 H 0.097 0.903 40 H 0.174 0.826 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.203 0.797 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.229 23.517 15.659 32.583 hybrid contribution 1.767 -0.938 1.688 2.617 sum -14.463 22.579 17.347 31.936 Atomic orbital electron populations 1.21877 0.92652 1.02888 1.03150 1.20303 0.97075 0.96553 0.91057 1.21877 1.01747 0.93782 1.03152 1.24971 0.93929 0.93787 0.87470 1.84574 1.55511 1.43848 1.12592 1.73684 1.11673 1.04369 1.16123 1.26386 1.00335 0.99296 0.90094 1.22072 1.09528 1.01619 0.94154 1.16711 0.78053 0.79827 0.86822 1.90792 1.59371 1.68730 1.21727 1.45653 1.52124 1.28608 1.10610 1.21343 0.98742 0.91933 0.88263 1.22085 0.97904 0.94356 0.93796 1.59921 1.41956 1.11320 1.16622 1.21705 0.96208 0.93721 0.96672 1.19661 0.83469 0.83421 0.90064 1.90578 1.60898 1.69023 1.23999 1.42194 1.46618 1.25828 1.08246 1.19439 1.28002 1.06958 0.89084 0.86234 1.25047 0.97016 0.96364 0.97741 1.69624 1.34192 1.18496 1.29674 0.86661 0.79163 0.79327 0.84138 1.19581 1.20172 1.19574 0.90766 0.92006 0.91868 0.85198 0.92046 0.90771 0.91864 0.78207 0.76592 0.89731 0.90905 0.94800 0.90343 0.82569 0.93567 0.89308 0.79689 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.18 37.16 0.34 -0.48 16 2 C -0.03 -0.21 3.29 -91.77 -0.30 -0.52 16 3 C -0.15 -0.81 9.18 37.16 0.34 -0.47 16 4 C 0.06 0.53 6.06 -34.63 -0.21 0.32 16 5 O 0.09 0.83 11.06 18.63 0.21 1.04 16 6 N -0.35 -3.24 12.01 31.81 0.38 -2.86 16 7 C 0.02 0.16 11.95 -14.72 -0.18 -0.02 16 8 C -0.27 -2.33 6.47 -102.89 -0.67 -2.99 16 9 C 0.60 6.11 7.81 -12.53 -0.10 6.02 16 10 O -0.53 -7.02 14.86 5.27 0.08 -6.94 16 11 N -0.72 -5.81 5.55 -61.39 -0.34 -6.16 16 12 C 0.12 1.19 5.93 -4.04 -0.02 1.16 16 13 C 0.05 0.47 5.80 -3.82 -0.02 0.45 16 14 N -0.66 -9.48 6.13 -115.05 -0.70 -10.18 16 15 C 0.05 0.77 6.17 -4.97 -0.03 0.74 16 16 C 0.45 9.91 7.82 -10.98 -0.09 9.83 16 17 O -0.56 -14.92 15.78 5.55 0.09 -14.83 16 18 N -0.59 -13.75 5.09 -10.96 -0.06 -13.80 16 19 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 20 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.51 13.96 55.50 0.77 -24.73 16 23 Si 0.88 19.03 27.74 -169.99 -4.71 14.32 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.13 1.13 5.89 -51.93 -0.31 0.83 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.20 0.70 7.88 -52.49 -0.41 0.29 16 35 H 0.40 2.04 7.84 -40.82 -0.32 1.72 16 36 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.35 5.28 8.43 -39.29 -0.33 4.95 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.37 7.51 5.76 -40.82 -0.24 7.27 16 44 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 377.40 15.07 5.69 5.69 Total: -1.00 -35.00 377.40 -6.01 -41.01 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -6.23 Total: 11.11 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -1.18 Total: 6.33 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: 0.05 Total: -57.74 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.37 Total: -20.73 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.32 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.00 -6.01 -41.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146441535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.373 kcal (2) G-P(sol) polarization free energy of solvation -34.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds