Wall clock time and date at job start Fri Apr 10 2020 18:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.47012 * 2 1 4 4 C 1.50696 * 109.46937 * 119.99822 * 2 1 3 5 5 O 1.33501 * 126.82966 * 300.02147 * 4 2 1 6 6 N 1.20653 * 113.15763 * 179.97438 * 5 4 2 7 7 C 1.30020 * 112.30194 * 359.72293 * 6 5 4 8 8 C 1.37355 * 126.83228 * 120.00319 * 4 2 1 9 9 C 1.47402 * 128.56099 * 359.97438 * 8 4 2 10 10 O 1.21603 * 120.00063 * 0.02562 * 9 8 4 11 11 N 1.34777 * 119.99679 * 179.97438 * 9 8 4 12 12 C 1.46499 * 119.99665 * 179.72400 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 N 1.46898 * 109.46947 * 180.02562 * 13 12 11 15 15 C 1.46904 * 110.99459 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46807 * 179.97438 * 15 14 13 17 17 O 1.21290 * 120.00074 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99911 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00169 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00091 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00239 * 180.02562 * 19 18 16 22 22 N 1.31410 * 119.99808 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 119.99774 * 0.02562 * 21 19 18 24 24 H 1.48507 * 109.47023 * 90.00269 * 23 21 19 25 25 H 1.48501 * 109.47015 * 209.99701 * 23 21 19 26 26 H 1.48493 * 109.47451 * 330.00067 * 23 21 19 27 27 H 1.09006 * 109.46789 * 60.00017 * 1 2 3 28 28 H 1.09002 * 109.46942 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46944 * 300.00339 * 1 2 3 30 30 H 1.09001 * 109.47397 * 239.99943 * 2 1 3 31 31 H 1.08999 * 109.46975 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46623 * 299.99464 * 3 2 1 33 33 H 1.09001 * 109.47086 * 59.99753 * 3 2 1 34 34 H 1.07998 * 127.33830 * 180.30130 * 7 6 5 35 35 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 36 36 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 37 37 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 38 38 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 39 39 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 40 40 H 1.00894 * 111.00658 * 56.04933 * 14 13 12 41 41 H 1.08992 * 109.47591 * 299.99636 * 15 14 13 42 42 H 1.09001 * 109.47600 * 60.00212 * 15 14 13 43 43 H 0.97001 * 120.00445 * 0.02562 * 18 16 15 44 44 H 0.97007 * 119.99691 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7950 -0.3754 2.5008 6 7 2.3198 -1.1184 3.2934 7 6 2.9862 -2.0707 2.7106 8 6 2.8251 -1.8314 1.2681 9 6 3.3732 -2.6074 0.1411 10 8 3.1346 -2.2700 -1.0025 11 7 4.1397 -3.6903 0.3783 12 6 4.6795 -4.4651 -0.7418 13 6 5.5022 -5.6368 -0.2020 14 7 6.0440 -6.4132 -1.3251 15 6 6.8419 -7.5488 -0.8436 16 6 7.3793 -8.3204 -2.0213 17 8 7.1232 -7.9595 -3.1506 18 7 8.1453 -9.4108 -1.8197 19 6 8.6338 -10.1130 -2.8910 20 1 8.4051 -9.7922 -3.8966 21 6 9.4231 -11.2375 -2.6832 22 7 9.8917 -11.9103 -3.7102 23 14 9.8181 -11.7928 -0.9440 24 1 8.7765 -12.7440 -0.4795 25 1 11.1431 -12.4630 -0.9272 26 1 9.8486 -10.6132 -0.0426 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8900 34 1 3.5414 -2.8666 3.1845 35 1 4.3304 -3.9593 1.2905 36 1 3.8585 -4.8468 -1.3488 37 1 5.3162 -3.8252 -1.3529 38 1 6.3232 -5.2551 0.4049 39 1 4.8656 -6.2767 0.4091 40 1 6.5857 -5.8269 -1.9422 41 1 7.6719 -7.1801 -0.2411 42 1 6.2149 -8.2024 -0.2371 43 1 8.3505 -9.6992 -0.9166 44 1 10.4431 -12.6951 -3.5650 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146441535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:56 Heat of formation + Delta-G solvation = -42.600748 kcal Electronic energy + Delta-G solvation = -25969.943536 eV Core-core repulsion = 21924.442725 eV Total energy + Delta-G solvation = -4045.500812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.99116 -40.74641 -40.27743 -37.60489 -36.91319 -36.02690 -35.35489 -34.66520 -33.73932 -32.00542 -30.63601 -28.11751 -27.95309 -26.08370 -25.10641 -24.33116 -23.08978 -22.03711 -21.33344 -21.27046 -20.28070 -18.98830 -18.76165 -17.77963 -17.41617 -17.25347 -17.14233 -16.74086 -16.27540 -16.11682 -15.80582 -15.48172 -15.24320 -14.97193 -14.79558 -14.63222 -14.45317 -14.22504 -14.14288 -13.91551 -13.39780 -13.09830 -12.97467 -12.87999 -12.59215 -12.43478 -12.40264 -12.39086 -12.27387 -11.96772 -11.87690 -11.50515 -11.50373 -11.21242 -10.61846 -10.44829 -10.24282 -10.15999 -9.37019 -8.40457 -6.01803 -0.04144 0.74572 1.31076 1.37443 1.46205 1.61906 1.96693 2.04016 2.07698 2.24433 2.81146 3.15892 3.19660 3.22584 3.43637 3.52323 3.83178 3.89301 4.05380 4.07698 4.12426 4.18770 4.25666 4.46603 4.48850 4.56556 4.61201 4.74315 4.77613 4.86681 4.87896 4.91743 4.96251 5.08970 5.24337 5.27466 5.34998 5.53127 5.88447 6.01461 6.32100 6.39603 6.60321 6.89012 7.06503 7.09593 7.40571 7.97737 8.77234 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.031414 B = 0.001705 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.117346 B =16420.491435 C =17107.865284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.032 4.032 3 C -0.145 4.145 4 C 0.064 3.936 5 O 0.085 5.915 6 N -0.377 5.377 7 C 0.041 3.959 8 C -0.284 4.284 9 C 0.598 3.402 10 O -0.567 6.567 11 N -0.701 5.701 12 C 0.127 3.873 13 C 0.058 3.942 14 N -0.690 5.690 15 C 0.065 3.935 16 C 0.445 3.555 17 O -0.617 6.617 18 N -0.590 5.590 19 C -0.331 4.331 20 H 0.053 0.947 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.968 3.032 24 H -0.257 1.257 25 H -0.277 1.277 26 H -0.228 1.228 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.239 0.761 35 H 0.418 0.582 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.346 0.654 41 H 0.084 0.916 42 H 0.120 0.880 43 H 0.391 0.609 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.302 23.619 20.723 34.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.052 4.052 3 C -0.202 4.202 4 C -0.001 4.001 5 O 0.029 5.971 6 N -0.085 5.085 7 C -0.142 4.142 8 C -0.291 4.291 9 C 0.385 3.615 10 O -0.448 6.448 11 N -0.354 5.354 12 C 0.003 3.997 13 C -0.071 4.071 14 N -0.323 5.323 15 C -0.067 4.067 16 C 0.233 3.767 17 O -0.501 6.501 18 N -0.232 5.232 19 C -0.460 4.460 20 H 0.071 0.929 21 C -0.216 4.216 22 N -0.576 5.576 23 Si 0.787 3.213 24 H -0.182 1.182 25 H -0.202 1.202 26 H -0.151 1.151 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.129 0.871 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.255 0.745 35 H 0.256 0.744 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.165 0.835 41 H 0.101 0.899 42 H 0.138 0.862 43 H 0.227 0.773 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.335 23.909 20.260 35.341 hybrid contribution 1.734 -0.983 0.134 1.998 sum -14.601 22.926 20.395 33.981 Atomic orbital electron populations 1.21870 0.91498 1.02620 1.04236 1.20325 0.98012 0.97063 0.89778 1.21869 1.01177 0.92923 1.04230 1.25281 0.93328 0.93688 0.87756 1.84565 1.55867 1.44111 1.12519 1.73677 1.12898 1.05301 1.16597 1.26944 0.99040 0.99131 0.89070 1.22029 1.10429 1.02024 0.94618 1.16923 0.77859 0.80065 0.86621 1.90780 1.60856 1.69836 1.23327 1.45433 1.51145 1.27623 1.11174 1.21131 0.97871 0.92100 0.88572 1.22082 0.98640 0.93853 0.92510 1.59886 1.41902 1.11881 1.18654 1.21626 0.97929 0.93725 0.93397 1.21081 0.81462 0.82599 0.91541 1.90559 1.62205 1.70177 1.27164 1.42012 1.47163 1.26140 1.07855 1.19010 1.30021 1.08770 0.88182 0.92852 1.26165 0.95811 0.95528 1.04047 1.69816 1.35127 1.19300 1.33345 0.85330 0.78798 0.80183 0.76964 1.18168 1.20203 1.15088 0.89409 0.92931 0.91049 0.87130 0.92907 0.89418 0.91056 0.74502 0.74444 0.91933 0.92109 0.92048 0.88412 0.83498 0.89867 0.86234 0.77339 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.18 71.98 0.66 -0.86 16 2 C -0.03 -0.45 3.29 -11.54 -0.04 -0.49 16 3 C -0.14 -1.50 9.18 71.99 0.66 -0.84 16 4 C 0.06 1.04 6.06 25.48 0.15 1.20 16 5 O 0.09 1.43 11.06 76.92 0.85 2.28 16 6 N -0.38 -6.27 12.01 -54.19 -0.65 -6.92 16 7 C 0.04 0.49 11.95 87.29 1.04 1.53 16 8 C -0.28 -4.62 6.47 -18.74 -0.12 -4.74 16 9 C 0.60 11.71 7.81 86.66 0.68 12.39 16 10 O -0.57 -15.40 14.86 -4.04 -0.06 -15.46 16 11 N -0.70 -9.82 5.55 -466.39 -2.59 -12.41 16 12 C 0.13 2.32 5.93 86.38 0.51 2.83 16 13 C 0.06 0.91 5.80 86.30 0.50 1.41 16 14 N -0.69 -18.10 6.13 -517.92 -3.17 -21.28 16 15 C 0.07 1.77 6.17 85.56 0.53 2.30 16 16 C 0.45 19.39 7.82 87.66 0.69 20.07 16 17 O -0.62 -33.81 15.78 -3.06 -0.05 -33.86 16 18 N -0.59 -26.99 5.09 -306.98 -1.56 -28.55 16 19 C -0.33 -19.20 10.16 84.04 0.85 -18.34 16 20 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 21 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 22 N -0.94 -56.16 13.96 21.66 0.30 -55.86 16 23 Si 0.97 37.79 27.74 68.60 1.90 39.69 16 24 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 25 H -0.28 -10.81 7.11 99.48 0.71 -10.11 16 26 H -0.23 -7.28 6.52 99.48 0.65 -6.63 16 27 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.11 2.03 5.89 -2.39 -0.01 2.01 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.24 0.64 7.88 -2.91 -0.02 0.62 16 35 H 0.42 2.70 7.84 -92.71 -0.73 1.97 16 36 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.35 10.02 8.43 -89.70 -0.76 9.26 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.39 14.47 5.76 -92.71 -0.53 13.93 16 44 H 0.28 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -83.90 377.40 0.54 -83.36 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -1.02 Total: 33.00 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 6.58 Total: 16.00 kcal Atomic # 7 Polarization: -117.34 SS G_CDS: -7.67 Total: -125.01 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: 0.74 Total: -47.04 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 1.90 Total: 39.69 kcal Total: -83.90 0.54 -83.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146441535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.762 kcal (2) G-P(sol) polarization free energy of solvation -83.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds