Wall clock time and date at job start Fri Apr 10 2020 18:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30610 * 125.42120 * 2 1 4 4 C 1.33693 * 108.99432 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.27739 * 180.02562 * 4 3 2 6 6 C 1.36340 * 107.45344 * 0.02562 * 4 3 2 7 7 C 1.46725 * 126.64652 * 179.97438 * 6 4 3 8 8 O 1.21683 * 119.99962 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99832 * 179.97438 * 7 6 4 10 10 C 1.46499 * 119.99665 * 179.72438 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46983 * 179.97438 * 12 11 10 14 14 C 1.46903 * 111.00204 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.46998 * 179.97438 * 14 13 12 16 16 O 1.21295 * 120.00000 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99798 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00027 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00216 * 0.02562 * 18 17 15 20 20 C 1.38956 * 120.00110 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99736 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00089 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47206 * 89.99962 * 22 20 18 24 24 H 1.48498 * 109.46991 * 210.00427 * 22 20 18 25 25 H 1.48499 * 109.46978 * 330.00358 * 22 20 18 26 26 O 1.33668 * 125.42049 * 180.29598 * 2 1 3 27 27 H 1.09002 * 109.47592 * 90.01933 * 1 2 3 28 28 H 1.09007 * 109.47099 * 210.02222 * 1 2 3 29 29 H 1.09006 * 109.47039 * 330.01864 * 1 2 3 30 30 H 1.09002 * 109.46990 * 269.97645 * 5 4 3 31 31 H 1.09000 * 109.47375 * 29.97383 * 5 4 3 32 32 H 1.08998 * 109.47682 * 149.97454 * 5 4 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 34 34 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 35 35 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 36 36 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 37 37 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 38 38 H 1.08995 * 109.47672 * 299.99669 * 12 11 10 39 39 H 1.09007 * 109.47288 * 60.00489 * 12 11 10 40 40 H 1.00901 * 110.99709 * 56.04986 * 13 12 11 41 41 H 1.08999 * 109.46830 * 300.00221 * 14 13 12 42 42 H 1.09000 * 109.46616 * 60.00377 * 14 13 12 43 43 H 0.97003 * 119.99741 * 0.02562 * 17 15 14 44 44 H 0.97007 * 120.00002 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0644 0.0000 4 6 3.5463 0.6863 -0.0006 5 6 4.7452 1.5994 -0.0002 6 6 3.5708 -0.6769 -0.0015 7 6 4.7635 -1.5314 -0.0029 8 8 5.8718 -1.0291 -0.0029 9 7 4.6315 -2.8727 -0.0032 10 6 5.8224 -3.7259 -0.0107 11 6 5.3968 -5.1956 -0.0164 12 6 6.6406 -6.0865 -0.0249 13 7 6.2320 -7.4976 -0.0298 14 6 7.4029 -8.3847 -0.0374 15 6 6.9453 -9.8206 -0.0416 16 8 5.7603 -10.0794 -0.0390 17 7 7.8527 -10.8170 -0.0492 18 6 7.4364 -12.1232 -0.0536 19 1 6.3814 -12.3537 -0.0513 20 6 8.3720 -13.1506 -0.0609 21 7 9.6558 -12.8701 -0.0632 22 14 7.8048 -14.9304 -0.0661 23 1 7.6496 -15.3964 -1.4676 24 1 8.8121 -15.7729 0.6271 25 1 6.5016 -15.0366 0.6379 26 8 2.2817 -1.0893 -0.0056 27 1 -0.3634 -0.0003 -1.0276 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5136 30 1 5.0342 1.8199 -1.0278 31 1 4.4950 2.5274 0.5139 32 1 5.5735 1.1115 0.5134 33 1 3.7480 -3.2732 -0.0029 34 1 6.4144 -3.5156 -0.9015 35 1 6.4196 -3.5241 0.8785 36 1 4.8048 -5.4058 0.8742 37 1 4.7997 -5.3975 -0.9057 38 1 7.2322 -5.8762 -0.9158 39 1 7.2382 -5.8848 0.8642 40 1 5.6233 -7.6951 -0.8099 41 1 8.0000 -8.1906 -0.9284 42 1 8.0055 -8.1985 0.8516 43 1 8.8004 -10.6099 -0.0517 44 1 10.3090 -13.5873 -0.0679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156125000.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:40 Heat of formation + Delta-G solvation = -60.529303 kcal Electronic energy + Delta-G solvation = -25455.221151 eV Core-core repulsion = 21408.942899 eV Total energy + Delta-G solvation = -4046.278252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.89983 -39.93788 -38.33903 -36.71963 -35.84663 -34.90426 -33.86397 -33.28157 -31.61239 -31.15364 -29.82280 -28.26246 -26.84876 -24.87659 -23.44462 -22.47508 -22.08953 -21.79967 -20.86345 -19.27191 -18.52786 -17.88195 -17.53647 -16.65186 -16.28610 -16.19469 -15.90352 -15.39594 -14.75326 -14.71171 -14.63672 -14.37443 -14.21544 -13.74937 -13.58478 -13.54237 -13.50035 -13.39527 -13.19074 -12.93321 -12.56868 -12.12069 -11.90353 -11.86958 -11.49582 -11.46836 -11.43020 -11.31146 -11.11545 -10.98360 -10.53413 -10.40314 -10.22940 -9.63640 -9.52290 -9.17220 -8.49437 -8.10138 -7.97462 -6.42904 -3.83833 0.35198 1.90477 1.92286 2.66567 2.70687 3.16966 3.25741 3.31735 3.39572 3.89247 4.05439 4.23853 4.24536 4.26918 4.69769 4.74531 4.76579 4.79335 4.93482 4.98390 5.09214 5.14130 5.18317 5.24268 5.28113 5.36116 5.41387 5.45691 5.53880 5.56262 5.75835 5.82654 5.91319 5.95036 5.96492 6.03648 6.25023 6.88766 7.15869 7.16724 7.54025 7.60924 7.61574 8.04961 8.59874 9.16535 9.52923 10.04258 10.74774 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.032218 B = 0.001496 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.858265 B =18712.829360 C =19538.002672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.223 3.777 3 N -0.491 5.491 4 C 0.086 3.914 5 C -0.082 4.082 6 C -0.124 4.124 7 C 0.610 3.390 8 O -0.513 6.513 9 N -0.716 5.716 10 C 0.120 3.880 11 C -0.130 4.130 12 C 0.063 3.937 13 N -0.670 5.670 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.584 6.584 17 N -0.563 5.563 18 C -0.301 4.301 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.931 3.069 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.269 1.269 26 O -0.189 6.189 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.407 0.593 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.030 0.970 39 H 0.075 0.925 40 H 0.349 0.651 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.220 27.376 -0.728 29.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.018 3.982 3 N -0.222 5.222 4 C -0.039 4.039 5 C -0.139 4.139 6 C -0.179 4.179 7 C 0.395 3.605 8 O -0.391 6.391 9 N -0.367 5.367 10 C -0.003 4.003 11 C -0.168 4.168 12 C -0.067 4.067 13 N -0.302 5.302 14 C -0.082 4.082 15 C 0.225 3.775 16 O -0.469 6.469 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 O -0.076 6.076 27 H 0.118 0.882 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.242 0.758 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.093 0.907 40 H 0.168 0.832 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.226 0.774 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.372 27.894 -0.038 30.515 hybrid contribution 0.491 -1.621 -0.945 1.940 sum -11.881 26.273 -0.983 28.851 Atomic orbital electron populations 1.20423 0.80571 1.05761 1.05292 1.26608 0.96723 0.78549 0.96305 1.70377 1.01631 1.29946 1.20228 1.22103 0.93500 0.91273 0.96975 1.20417 0.92153 0.97506 1.03853 1.22849 0.82376 0.95188 1.17467 1.16269 0.85453 0.81611 0.77154 1.90874 1.23695 1.73864 1.50677 1.45905 1.11147 1.05330 1.74311 1.21448 0.86716 0.89093 1.03080 1.21755 0.99226 0.91995 1.03866 1.21820 0.95686 0.88317 1.00915 1.60046 1.17438 1.01306 1.51439 1.21672 0.92465 0.92763 1.01300 1.19806 0.86965 0.86156 0.84525 1.90519 1.16729 1.84124 1.55489 1.41863 1.08319 1.05507 1.64284 1.19711 0.94724 0.80914 1.47669 0.87909 1.25269 0.94861 1.00519 0.97280 1.69613 1.00240 1.33888 1.50514 0.85847 0.78444 0.81559 0.78369 1.20428 1.20907 1.19407 1.84441 1.16145 1.37366 1.69677 0.88243 0.88709 0.87595 0.89859 0.90357 0.88534 0.75847 0.90867 0.90618 0.89972 0.91131 0.95142 0.90675 0.83170 0.93780 0.89516 0.77432 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 36.00 0.38 0.19 16 2 C 0.22 1.77 8.32 -12.80 -0.11 1.67 16 3 N -0.49 -4.96 11.26 -7.07 -0.08 -5.04 16 4 C 0.09 0.89 7.16 -82.47 -0.59 0.30 16 5 C -0.08 -0.70 9.87 36.00 0.36 -0.34 16 6 C -0.12 -1.29 7.18 -36.84 -0.26 -1.55 16 7 C 0.61 6.58 7.79 -12.83 -0.10 6.48 16 8 O -0.51 -6.66 14.79 5.20 0.08 -6.58 16 9 N -0.72 -6.28 5.55 -61.60 -0.34 -6.62 16 10 C 0.12 1.04 5.67 -4.04 -0.02 1.02 16 11 C -0.13 -1.18 5.59 -26.73 -0.15 -1.33 16 12 C 0.06 0.70 5.69 -3.82 -0.02 0.68 16 13 N -0.67 -10.41 6.12 -115.05 -0.70 -11.12 16 14 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 15 C 0.44 10.36 7.82 -10.99 -0.09 10.27 16 16 O -0.58 -15.82 15.78 5.54 0.09 -15.74 16 17 N -0.56 -14.26 5.29 -10.96 -0.06 -14.32 16 18 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 22 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 O -0.19 -1.71 10.57 4.41 0.05 -1.66 16 27 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.11 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.88 6.47 -51.93 -0.34 0.55 16 33 H 0.41 2.90 8.27 -40.82 -0.34 2.56 16 34 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.35 5.55 8.43 -39.29 -0.33 5.22 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 382.61 15.07 5.77 5.77 Total: -1.00 -34.56 382.61 -6.72 -41.28 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -6.33 Total: 11.60 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: -0.88 Total: 10.22 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.46 Total: -60.84 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: 0.21 Total: -23.98 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.56 -6.72 -41.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156125000.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.254 kcal (2) G-P(sol) polarization free energy of solvation -34.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds