Wall clock time and date at job start Fri Apr 10 2020 18:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30610 * 125.42120 * 2 1 4 4 C 1.33693 * 108.99432 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.27739 * 180.02562 * 4 3 2 6 6 C 1.36340 * 107.45344 * 0.02562 * 4 3 2 7 7 C 1.46725 * 126.64652 * 179.97438 * 6 4 3 8 8 O 1.21683 * 119.99962 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99832 * 179.97438 * 7 6 4 10 10 C 1.46499 * 119.99665 * 179.72438 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46983 * 179.97438 * 12 11 10 14 14 C 1.46903 * 111.00204 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.46998 * 179.97438 * 14 13 12 16 16 O 1.21295 * 120.00000 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99798 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00027 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00216 * 0.02562 * 18 17 15 20 20 C 1.38956 * 120.00110 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99736 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00089 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47206 * 89.99962 * 22 20 18 24 24 H 1.48498 * 109.46991 * 210.00427 * 22 20 18 25 25 H 1.48499 * 109.46978 * 330.00358 * 22 20 18 26 26 O 1.33668 * 125.42049 * 180.29598 * 2 1 3 27 27 H 1.09002 * 109.47592 * 90.01933 * 1 2 3 28 28 H 1.09007 * 109.47099 * 210.02222 * 1 2 3 29 29 H 1.09006 * 109.47039 * 330.01864 * 1 2 3 30 30 H 1.09002 * 109.46990 * 269.97645 * 5 4 3 31 31 H 1.09000 * 109.47375 * 29.97383 * 5 4 3 32 32 H 1.08998 * 109.47682 * 149.97454 * 5 4 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 34 34 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 35 35 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 36 36 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 37 37 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 38 38 H 1.08995 * 109.47672 * 299.99669 * 12 11 10 39 39 H 1.09007 * 109.47288 * 60.00489 * 12 11 10 40 40 H 1.00901 * 110.99709 * 56.04986 * 13 12 11 41 41 H 1.08999 * 109.46830 * 300.00221 * 14 13 12 42 42 H 1.09000 * 109.46616 * 60.00377 * 14 13 12 43 43 H 0.97003 * 119.99741 * 0.02562 * 17 15 14 44 44 H 0.97007 * 120.00002 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0644 0.0000 4 6 3.5463 0.6863 -0.0006 5 6 4.7452 1.5994 -0.0002 6 6 3.5708 -0.6769 -0.0015 7 6 4.7635 -1.5314 -0.0029 8 8 5.8718 -1.0291 -0.0029 9 7 4.6315 -2.8727 -0.0032 10 6 5.8224 -3.7259 -0.0107 11 6 5.3968 -5.1956 -0.0164 12 6 6.6406 -6.0865 -0.0249 13 7 6.2320 -7.4976 -0.0298 14 6 7.4029 -8.3847 -0.0374 15 6 6.9453 -9.8206 -0.0416 16 8 5.7603 -10.0794 -0.0390 17 7 7.8527 -10.8170 -0.0492 18 6 7.4364 -12.1232 -0.0536 19 1 6.3814 -12.3537 -0.0513 20 6 8.3720 -13.1506 -0.0609 21 7 9.6558 -12.8701 -0.0632 22 14 7.8048 -14.9304 -0.0661 23 1 7.6496 -15.3964 -1.4676 24 1 8.8121 -15.7729 0.6271 25 1 6.5016 -15.0366 0.6379 26 8 2.2817 -1.0893 -0.0056 27 1 -0.3634 -0.0003 -1.0276 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5136 30 1 5.0342 1.8199 -1.0278 31 1 4.4950 2.5274 0.5139 32 1 5.5735 1.1115 0.5134 33 1 3.7480 -3.2732 -0.0029 34 1 6.4144 -3.5156 -0.9015 35 1 6.4196 -3.5241 0.8785 36 1 4.8048 -5.4058 0.8742 37 1 4.7997 -5.3975 -0.9057 38 1 7.2322 -5.8762 -0.9158 39 1 7.2382 -5.8848 0.8642 40 1 5.6233 -7.6951 -0.8099 41 1 8.0000 -8.1906 -0.9284 42 1 8.0055 -8.1985 0.8516 43 1 8.8004 -10.6099 -0.0517 44 1 10.3090 -13.5873 -0.0679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156125000.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:39 Heat of formation + Delta-G solvation = -90.268458 kcal Electronic energy + Delta-G solvation = -25456.510738 eV Core-core repulsion = 21408.942899 eV Total energy + Delta-G solvation = -4047.567839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.56919 -40.74795 -40.15259 -37.72938 -36.63135 -36.07196 -35.63580 -33.85754 -33.29487 -32.45973 -30.32134 -29.19626 -28.07879 -26.40186 -24.67312 -23.14031 -22.84818 -22.59457 -21.62360 -21.06171 -19.91677 -19.27675 -18.21611 -17.88498 -17.28239 -17.16839 -16.84335 -16.62195 -16.35740 -15.98591 -15.51302 -15.48891 -15.26668 -15.06618 -14.72565 -14.39563 -14.27168 -14.08904 -13.88336 -13.57002 -13.50126 -13.38267 -13.19845 -13.17364 -12.86685 -12.73233 -12.45658 -12.41522 -12.11859 -12.09614 -12.03932 -11.87915 -11.50691 -11.34638 -10.40762 -10.35690 -10.01922 -9.85822 -9.33402 -8.46866 -5.95813 -0.35536 1.24382 1.25011 1.38330 1.42286 1.55106 1.87719 1.99574 2.04970 2.29619 2.84973 2.94305 3.20491 3.51600 3.57534 3.58688 3.97948 4.09305 4.14383 4.25156 4.29912 4.34570 4.48683 4.55644 4.58352 4.59420 4.61006 4.64344 4.67036 4.72948 4.76804 4.85440 5.03789 5.11719 5.15963 5.25323 5.30186 5.40800 5.88238 6.09676 6.17349 6.41059 6.48700 6.59760 6.85655 7.12239 7.55955 8.11063 8.70432 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.032218 B = 0.001496 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.858265 B =18712.829360 C =19538.002672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.232 3.768 3 N -0.519 5.519 4 C 0.075 3.925 5 C -0.080 4.080 6 C -0.144 4.144 7 C 0.609 3.391 8 O -0.542 6.542 9 N -0.707 5.707 10 C 0.126 3.874 11 C -0.117 4.117 12 C 0.063 3.937 13 N -0.685 5.685 14 C 0.064 3.936 15 C 0.436 3.564 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.336 4.336 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.994 3.006 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.273 1.273 26 O -0.191 6.191 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.415 0.585 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.081 0.919 40 H 0.345 0.655 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.397 0.603 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.876 27.773 -0.892 30.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.027 3.973 3 N -0.250 5.250 4 C -0.049 4.049 5 C -0.136 4.136 6 C -0.199 4.199 7 C 0.395 3.605 8 O -0.422 6.422 9 N -0.357 5.357 10 C 0.003 3.997 11 C -0.155 4.155 12 C -0.066 4.066 13 N -0.317 5.317 14 C -0.068 4.068 15 C 0.224 3.776 16 O -0.511 6.511 17 N -0.210 5.210 18 C -0.466 4.466 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.818 3.182 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.198 1.198 26 O -0.079 6.079 27 H 0.137 0.863 28 H 0.132 0.868 29 H 0.136 0.864 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.251 0.749 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.164 0.836 41 H 0.086 0.914 42 H 0.122 0.878 43 H 0.231 0.769 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.020 28.306 -0.201 31.158 hybrid contribution 0.601 -1.670 -0.893 1.987 sum -12.419 26.636 -1.093 29.409 Atomic orbital electron populations 1.20766 0.77105 1.07264 1.06897 1.27691 0.98262 0.77786 0.93512 1.70412 1.01686 1.30969 1.21895 1.22447 0.94227 0.91713 0.96499 1.20421 0.91373 0.97588 1.04263 1.22740 0.82838 0.95185 1.19138 1.16340 0.85278 0.82051 0.76844 1.90850 1.24698 1.74430 1.52205 1.45830 1.11695 1.04778 1.73444 1.21365 0.86605 0.88690 1.03044 1.21600 0.98310 0.91596 1.04031 1.21901 0.96826 0.86001 1.01867 1.60045 1.16919 1.03197 1.51577 1.21535 0.93347 0.88717 1.03192 1.20911 0.86187 0.88312 0.82199 1.90486 1.18517 1.85340 1.56721 1.41939 1.08793 1.05303 1.64988 1.19686 0.94055 0.82776 1.50058 0.90278 1.26049 0.94865 1.04118 0.96209 1.69673 1.00888 1.35275 1.50230 0.84914 0.77962 0.76713 0.78656 1.19583 1.19566 1.19803 1.84443 1.15723 1.37756 1.69943 0.86340 0.86788 0.86417 0.89210 0.89250 0.89457 0.74852 0.90813 0.90805 0.90334 0.90486 0.93750 0.90044 0.83626 0.91432 0.87767 0.76943 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.22 10.51 71.24 0.75 0.53 16 2 C 0.23 3.38 8.32 88.29 0.73 4.12 16 3 N -0.52 -10.14 11.26 -291.07 -3.28 -13.42 16 4 C 0.08 1.56 7.16 41.83 0.30 1.86 16 5 C -0.08 -1.36 9.87 71.23 0.70 -0.65 16 6 C -0.14 -2.97 7.18 24.05 0.17 -2.80 16 7 C 0.61 13.04 7.79 86.46 0.67 13.72 16 8 O -0.54 -14.17 14.79 -4.29 -0.06 -14.23 16 9 N -0.71 -11.77 5.55 -467.03 -2.59 -14.37 16 10 C 0.13 2.03 5.67 86.38 0.49 2.52 16 11 C -0.12 -1.91 5.59 30.59 0.17 -1.74 16 12 C 0.06 1.28 5.69 86.30 0.49 1.77 16 13 N -0.68 -20.30 6.12 -517.92 -3.17 -23.47 16 14 C 0.06 2.14 6.17 85.56 0.53 2.67 16 15 C 0.44 20.59 7.82 87.66 0.69 21.28 16 16 O -0.62 -34.36 15.78 -3.07 -0.05 -34.41 16 17 N -0.57 -29.31 5.29 -306.99 -1.62 -30.93 16 18 C -0.34 -19.09 9.68 84.04 0.81 -18.27 16 19 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 20 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 21 N -0.92 -49.47 13.05 21.66 0.28 -49.19 16 22 Si 0.99 42.73 29.55 68.60 2.03 44.76 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 O -0.19 -3.27 10.57 -7.12 -0.08 -3.35 16 27 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.11 0.00 8.14 -2.38 -0.02 -0.02 16 29 H 0.12 0.18 8.14 -2.38 -0.02 0.17 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.65 6.47 -2.39 -0.02 1.64 16 33 H 0.41 5.46 8.27 -92.71 -0.77 4.69 16 34 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 1.57 8.14 -2.38 -0.02 1.56 16 40 H 0.35 10.65 8.43 -89.69 -0.76 9.89 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 43 H 0.40 19.22 7.90 -92.71 -0.73 18.48 16 44 H 0.28 13.97 8.31 -92.70 -0.77 13.20 16 Total: -1.00 -75.26 382.61 -2.76 -78.02 By element: Atomic # 1 Polarization: 36.98 SS G_CDS: -1.19 Total: 35.79 kcal Atomic # 6 Polarization: 17.81 SS G_CDS: 6.98 Total: 24.79 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -10.38 Total: -131.38 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -0.19 Total: -51.99 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -75.26 -2.76 -78.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156125000.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.249 kcal (2) G-P(sol) polarization free energy of solvation -75.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds