Wall clock time and date at job start Fri Apr 10 2020 18:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47019 * 2 1 4 4 C 1.53009 * 109.47100 * 240.00133 * 2 1 3 5 5 O 1.45203 * 109.47319 * 120.00136 * 2 1 3 6 6 C 1.34639 * 116.99815 * 60.00303 * 5 2 1 7 7 O 1.21506 * 120.00254 * 359.97438 * 6 5 2 8 8 N 1.34775 * 119.99520 * 180.02562 * 6 5 2 9 9 C 1.46504 * 119.99687 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47330 * 324.99829 * 9 8 6 11 11 C 1.50696 * 109.47019 * 85.00023 * 9 8 6 12 12 H 1.08007 * 119.99537 * 239.99598 * 11 9 8 13 13 C 1.37876 * 120.00481 * 60.00039 * 11 9 8 14 14 N 1.31519 * 119.99518 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00400 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46622 * 60.00101 * 15 13 11 17 17 H 1.48493 * 109.47177 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47240 * 300.00271 * 15 13 11 19 19 C 1.50706 * 109.46841 * 204.99939 * 9 8 6 20 20 O 1.21278 * 119.99984 * 359.97438 * 19 9 8 21 21 N 1.34778 * 119.99709 * 180.02562 * 19 9 8 22 22 C 1.46498 * 119.99852 * 180.02562 * 21 19 9 23 23 C 1.50698 * 109.47179 * 179.97438 * 22 21 19 24 24 C 1.39874 * 126.04031 * 269.99762 * 23 22 21 25 25 N 1.30836 * 108.20052 * 179.73886 * 24 23 22 26 26 N 1.40084 * 108.20904 * 0.40640 * 25 24 23 27 27 H 0.97001 * 126.04219 * 179.85882 * 26 25 24 28 28 C 1.34947 * 107.92164 * 359.58781 * 26 25 24 29 29 H 1.09004 * 109.47069 * 299.99765 * 1 2 3 30 30 H 1.08998 * 109.47409 * 59.99978 * 1 2 3 31 31 H 1.09006 * 109.47336 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46726 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47048 * 300.00243 * 3 2 1 34 34 H 1.08988 * 109.47147 * 60.00540 * 3 2 1 35 35 H 1.09006 * 109.46766 * 300.00030 * 4 2 1 36 36 H 1.09004 * 109.46683 * 59.99843 * 4 2 1 37 37 H 1.08993 * 109.47083 * 179.97438 * 4 2 1 38 38 H 0.97001 * 120.00297 * 359.97438 * 8 6 5 39 39 H 0.96998 * 119.99634 * 180.02562 * 14 13 11 40 40 H 0.97003 * 120.00276 * 359.97438 * 21 19 9 41 41 H 1.09007 * 109.47492 * 59.99594 * 22 21 19 42 42 H 1.09002 * 109.46859 * 299.99603 * 22 21 19 43 43 H 1.08001 * 125.89534 * 0.02562 * 24 23 22 44 44 H 1.08006 * 126.12506 * 180.22115 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9510 -2.5095 0.5040 8 7 2.0673 -2.6654 2.4170 9 6 1.6733 -4.0666 2.5835 10 1 0.6642 -4.2088 2.1966 11 6 2.6306 -4.9509 1.8269 12 1 2.2653 -5.5912 1.0375 13 6 3.9728 -4.9427 2.1423 14 7 4.4177 -4.1626 3.1032 15 14 5.1594 -6.0393 1.2048 16 1 5.1274 -5.6845 -0.2369 17 1 6.5341 -5.8452 1.7315 18 1 4.7598 -7.4595 1.3741 19 6 1.7057 -4.4271 4.0465 20 8 2.0269 -3.5957 4.8689 21 7 1.3789 -5.6739 4.4407 22 6 1.4099 -6.0242 5.8628 23 6 1.0047 -7.4655 6.0341 24 6 -0.2978 -7.9366 6.2290 25 7 -0.2502 -9.2403 6.3290 26 7 1.0872 -9.6398 6.2100 27 1 1.4160 -10.5516 6.2484 28 6 1.8366 -8.5327 6.0264 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6765 1.9563 -0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6766 -1.7490 -1.2493 36 1 1.6765 -0.2074 -2.1393 37 1 3.1299 -0.7209 -1.2496 38 1 2.6269 -2.2365 3.0833 39 1 5.3620 -4.1565 3.3248 40 1 1.1224 -6.3390 3.7828 41 1 0.7168 -5.3848 6.4098 42 1 2.4187 -5.8815 6.2502 43 1 -1.1894 -7.3295 6.2827 44 1 2.9085 -8.5036 5.8969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180782639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:17 Heat of formation + Delta-G solvation = -47.693064 kcal Electronic energy + Delta-G solvation = -28117.034882 eV Core-core repulsion = 24071.313251 eV Total energy + Delta-G solvation = -4045.721631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.14959 -39.79495 -38.47891 -36.34245 -34.26820 -33.74748 -33.39486 -31.81254 -31.43283 -30.39142 -27.85779 -27.06777 -26.96222 -25.24978 -23.57445 -21.97488 -21.33995 -20.07754 -19.43966 -19.14019 -17.94928 -17.39817 -16.73191 -15.88211 -15.31402 -15.21282 -15.05883 -14.86468 -14.50408 -14.36129 -14.04578 -13.81324 -13.74793 -13.47921 -13.06261 -12.79265 -12.60733 -12.23135 -12.17163 -11.99177 -11.83107 -11.52921 -11.47354 -11.31534 -11.11609 -11.02221 -10.79180 -10.73216 -10.61625 -10.20148 -10.00100 -9.66177 -9.65073 -9.20838 -8.95404 -8.72908 -8.28356 -8.07362 -7.64787 -6.23723 -4.38310 1.88401 2.70853 2.88934 3.13222 3.23602 3.25129 3.28486 4.00256 4.02451 4.28109 4.50335 4.82394 4.96336 5.01103 5.14008 5.16478 5.31011 5.39061 5.47909 5.57851 5.74259 5.78469 5.85109 5.98459 6.05918 6.09762 6.18603 6.26261 6.28954 6.36105 6.47892 6.63119 6.66413 6.71641 6.82131 7.22242 7.33236 7.45586 7.62908 7.66316 7.73169 7.90956 8.54123 8.68070 8.89745 9.32318 9.49777 9.66412 10.78802 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014800 B = 0.003528 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.486678 B = 7933.714771 C = 9000.743141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.374 6.374 6 C 0.645 3.355 7 O -0.591 6.591 8 N -0.660 5.660 9 C 0.267 3.733 10 H 0.068 0.932 11 C -0.537 4.537 12 H 0.070 0.930 13 C 0.079 3.921 14 N -0.857 5.857 15 Si 0.898 3.102 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.543 3.457 20 O -0.556 6.556 21 N -0.726 5.726 22 C 0.204 3.796 23 C -0.248 4.248 24 C 0.066 3.934 25 N -0.303 5.303 26 N -0.481 5.481 27 H 0.438 0.562 28 C 0.079 3.921 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.406 0.594 39 H 0.268 0.732 40 H 0.399 0.601 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.184 0.816 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.251 -1.376 1.615 4.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.290 6.290 6 C 0.397 3.603 7 O -0.483 6.483 8 N -0.317 5.317 9 C 0.163 3.837 10 H 0.086 0.914 11 C -0.576 4.576 12 H 0.088 0.912 13 C -0.129 4.129 14 N -0.491 5.491 15 Si 0.725 3.275 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.200 1.200 19 C 0.331 3.669 20 O -0.433 6.433 21 N -0.380 5.380 22 C 0.079 3.921 23 C -0.259 4.259 24 C -0.121 4.121 25 N -0.125 5.125 26 N -0.188 5.188 27 H 0.281 0.719 28 C -0.069 4.069 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.243 0.757 39 H 0.078 0.922 40 H 0.233 0.767 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.201 0.799 44 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -4.875 -1.963 2.086 5.654 hybrid contribution 1.810 -0.470 -0.723 2.005 sum -3.065 -2.433 1.363 4.144 Atomic orbital electron populations 1.22495 0.94715 1.05108 1.01426 1.21801 0.93872 0.91180 0.83270 1.21822 1.02061 0.93392 1.02308 1.22490 1.01374 1.03923 0.96012 1.86306 1.72215 1.25235 1.45203 1.18063 0.79505 0.79497 0.83214 1.90754 1.43377 1.70355 1.43828 1.45104 1.52428 1.12189 1.21981 1.18273 0.97135 0.78845 0.89464 0.91409 1.21145 0.92080 1.24424 1.19904 0.91179 1.25093 0.98501 0.94973 0.94324 1.69932 1.15473 1.36162 1.27506 0.86564 0.79711 0.80746 0.80479 1.20017 1.21244 1.20046 1.21019 0.73509 0.80963 0.91410 1.90521 1.47737 1.49733 1.55335 1.45758 1.71862 1.13410 1.06928 1.19233 1.00894 0.88262 0.83681 1.20272 0.92892 0.96452 1.16323 1.23875 0.98238 0.91651 0.98335 1.77306 0.96138 1.14118 1.24963 1.46312 1.05308 1.08804 1.58382 0.71881 1.22545 0.98611 0.86539 0.99233 0.92666 0.92078 0.89083 0.91768 0.90909 0.91840 0.88874 0.92210 0.92543 0.75732 0.92226 0.76706 0.91758 0.91685 0.79911 0.80448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 8.37 37.15 0.31 -2.49 16 2 C 0.14 2.29 1.13 -90.62 -0.10 2.19 16 3 C -0.14 -1.81 8.85 37.16 0.33 -1.48 16 4 C -0.18 -3.01 8.37 37.16 0.31 -2.70 16 5 O -0.37 -7.83 9.94 -40.32 -0.40 -8.23 16 6 C 0.65 15.10 8.01 54.05 0.43 15.53 16 7 O -0.59 -14.31 11.54 -19.28 -0.22 -14.54 16 8 N -0.66 -16.08 4.36 -61.01 -0.27 -16.34 16 9 C 0.27 6.39 2.57 -70.23 -0.18 6.21 16 10 H 0.07 1.60 7.58 -51.93 -0.39 1.21 16 11 C -0.54 -13.51 8.66 -34.44 -0.30 -13.81 16 12 H 0.07 1.77 7.81 -52.48 -0.41 1.36 16 13 C 0.08 2.00 5.23 -17.82 -0.09 1.91 16 14 N -0.86 -22.55 11.58 55.43 0.64 -21.91 16 15 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 19 C 0.54 12.34 6.00 -10.98 -0.07 12.27 16 20 O -0.56 -14.02 15.79 5.56 0.09 -13.93 16 21 N -0.73 -13.50 5.45 -61.47 -0.33 -13.83 16 22 C 0.20 3.24 6.15 -5.20 -0.03 3.20 16 23 C -0.25 -3.29 5.47 -105.05 -0.57 -3.86 16 24 C 0.07 0.84 11.96 -17.36 -0.21 0.63 16 25 N -0.30 -3.98 12.70 30.63 0.39 -3.59 16 26 N -0.48 -5.17 7.36 30.45 0.22 -4.95 16 27 H 0.44 3.23 8.96 -182.61 -1.64 1.59 16 28 C 0.08 0.92 11.90 -17.22 -0.21 0.72 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.66 5.88 -51.93 -0.31 1.36 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.79 8.14 -51.94 -0.42 0.37 16 35 H 0.09 1.84 5.88 -51.93 -0.31 1.53 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.41 10.33 7.58 -40.82 -0.31 10.02 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.40 7.01 8.35 -40.82 -0.34 6.67 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 44 H 0.18 1.71 8.06 -52.48 -0.42 1.28 16 LS Contribution 372.00 15.07 5.61 5.61 Total: -1.00 -31.60 372.00 -7.16 -38.76 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: -7.49 Total: 19.61 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: -0.37 Total: 18.32 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.65 Total: -60.62 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -0.54 Total: -36.70 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.60 -7.16 -38.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180782639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.932 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds