Wall clock time and date at job start Fri Apr 10 2020 18:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47019 * 2 1 4 4 C 1.53009 * 109.47100 * 240.00133 * 2 1 3 5 5 O 1.45203 * 109.47319 * 120.00136 * 2 1 3 6 6 C 1.34639 * 116.99815 * 60.00303 * 5 2 1 7 7 O 1.21506 * 120.00254 * 359.97438 * 6 5 2 8 8 N 1.34775 * 119.99520 * 180.02562 * 6 5 2 9 9 C 1.46504 * 119.99687 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47330 * 324.99829 * 9 8 6 11 11 C 1.50696 * 109.47019 * 85.00023 * 9 8 6 12 12 H 1.08007 * 119.99537 * 239.99598 * 11 9 8 13 13 C 1.37876 * 120.00481 * 60.00039 * 11 9 8 14 14 N 1.31519 * 119.99518 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00400 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46622 * 60.00101 * 15 13 11 17 17 H 1.48493 * 109.47177 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47240 * 300.00271 * 15 13 11 19 19 C 1.50706 * 109.46841 * 204.99939 * 9 8 6 20 20 O 1.21278 * 119.99984 * 359.97438 * 19 9 8 21 21 N 1.34778 * 119.99709 * 180.02562 * 19 9 8 22 22 C 1.46498 * 119.99852 * 180.02562 * 21 19 9 23 23 C 1.50698 * 109.47179 * 179.97438 * 22 21 19 24 24 C 1.39874 * 126.04031 * 269.99762 * 23 22 21 25 25 N 1.30836 * 108.20052 * 179.73886 * 24 23 22 26 26 N 1.40084 * 108.20904 * 0.40640 * 25 24 23 27 27 H 0.97001 * 126.04219 * 179.85882 * 26 25 24 28 28 C 1.34947 * 107.92164 * 359.58781 * 26 25 24 29 29 H 1.09004 * 109.47069 * 299.99765 * 1 2 3 30 30 H 1.08998 * 109.47409 * 59.99978 * 1 2 3 31 31 H 1.09006 * 109.47336 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46726 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47048 * 300.00243 * 3 2 1 34 34 H 1.08988 * 109.47147 * 60.00540 * 3 2 1 35 35 H 1.09006 * 109.46766 * 300.00030 * 4 2 1 36 36 H 1.09004 * 109.46683 * 59.99843 * 4 2 1 37 37 H 1.08993 * 109.47083 * 179.97438 * 4 2 1 38 38 H 0.97001 * 120.00297 * 359.97438 * 8 6 5 39 39 H 0.96998 * 119.99634 * 180.02562 * 14 13 11 40 40 H 0.97003 * 120.00276 * 359.97438 * 21 19 9 41 41 H 1.09007 * 109.47492 * 59.99594 * 22 21 19 42 42 H 1.09002 * 109.46859 * 299.99603 * 22 21 19 43 43 H 1.08001 * 125.89534 * 0.02562 * 24 23 22 44 44 H 1.08006 * 126.12506 * 180.22115 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9510 -2.5095 0.5040 8 7 2.0673 -2.6654 2.4170 9 6 1.6733 -4.0666 2.5835 10 1 0.6642 -4.2088 2.1966 11 6 2.6306 -4.9509 1.8269 12 1 2.2653 -5.5912 1.0375 13 6 3.9728 -4.9427 2.1423 14 7 4.4177 -4.1626 3.1032 15 14 5.1594 -6.0393 1.2048 16 1 5.1274 -5.6845 -0.2369 17 1 6.5341 -5.8452 1.7315 18 1 4.7598 -7.4595 1.3741 19 6 1.7057 -4.4271 4.0465 20 8 2.0269 -3.5957 4.8689 21 7 1.3789 -5.6739 4.4407 22 6 1.4099 -6.0242 5.8628 23 6 1.0047 -7.4655 6.0341 24 6 -0.2978 -7.9366 6.2290 25 7 -0.2502 -9.2403 6.3290 26 7 1.0872 -9.6398 6.2100 27 1 1.4160 -10.5516 6.2484 28 6 1.8366 -8.5327 6.0264 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6765 1.9563 -0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6766 -1.7490 -1.2493 36 1 1.6765 -0.2074 -2.1393 37 1 3.1299 -0.7209 -1.2496 38 1 2.6269 -2.2365 3.0833 39 1 5.3620 -4.1565 3.3248 40 1 1.1224 -6.3390 3.7828 41 1 0.7168 -5.3848 6.4098 42 1 2.4187 -5.8815 6.2502 43 1 -1.1894 -7.3295 6.2827 44 1 2.9085 -8.5036 5.8969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180782639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:16 Heat of formation + Delta-G solvation = -71.414912 kcal Electronic energy + Delta-G solvation = -28118.063538 eV Core-core repulsion = 24071.313251 eV Total energy + Delta-G solvation = -4046.750288 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.12574 -41.47991 -40.20146 -37.98063 -35.89695 -35.52523 -34.90431 -33.67502 -32.45960 -31.62341 -29.60334 -28.25579 -28.19710 -26.69306 -25.33486 -23.01408 -22.84539 -21.22689 -21.10219 -20.75198 -19.31783 -18.75023 -18.58176 -17.47047 -16.95507 -16.80539 -16.70490 -16.61507 -15.75389 -15.54041 -15.36538 -15.26938 -15.16279 -14.94112 -14.55916 -14.26705 -13.98588 -13.70991 -13.55482 -13.21624 -13.10075 -12.98518 -12.83171 -12.75007 -12.73347 -12.67862 -12.38003 -12.16326 -12.10502 -11.79636 -11.65065 -11.19274 -11.00840 -10.74289 -10.60223 -10.39764 -9.69288 -9.61890 -9.45652 -8.17593 -6.38324 0.93517 1.38499 1.44014 1.50601 1.52217 1.74221 2.05583 2.18816 2.23407 2.42094 2.98268 3.12510 3.80415 3.81203 3.89923 3.92371 4.07194 4.07947 4.28522 4.53704 4.62159 4.65838 4.69495 4.70533 4.74375 4.83602 4.88681 4.94377 4.96648 4.99498 5.16621 5.22909 5.40451 5.45601 5.62531 5.63921 5.70337 5.85544 5.91296 6.02354 6.41649 6.62449 6.70243 6.95586 7.02974 7.35753 7.75001 7.83748 8.83225 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014800 B = 0.003528 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.486678 B = 7933.714771 C = 9000.743141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.118 3.882 3 C -0.132 4.132 4 C -0.176 4.176 5 O -0.383 6.383 6 C 0.643 3.357 7 O -0.604 6.604 8 N -0.667 5.667 9 C 0.263 3.737 10 H 0.062 0.938 11 C -0.546 4.546 12 H 0.064 0.936 13 C 0.044 3.956 14 N -0.878 5.878 15 Si 0.953 3.047 16 H -0.285 1.285 17 H -0.286 1.286 18 H -0.259 1.259 19 C 0.543 3.457 20 O -0.586 6.586 21 N -0.713 5.713 22 C 0.211 3.789 23 C -0.267 4.267 24 C 0.065 3.935 25 N -0.325 5.325 26 N -0.467 5.467 27 H 0.453 0.547 28 C 0.092 3.908 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.399 0.601 39 H 0.265 0.735 40 H 0.405 0.595 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.200 0.800 44 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.123 -1.587 0.979 4.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.081 3.919 3 C -0.188 4.188 4 C -0.233 4.233 5 O -0.299 6.299 6 C 0.396 3.604 7 O -0.497 6.497 8 N -0.323 5.323 9 C 0.158 3.842 10 H 0.080 0.920 11 C -0.585 4.585 12 H 0.082 0.918 13 C -0.162 4.162 14 N -0.512 5.512 15 Si 0.779 3.221 16 H -0.211 1.211 17 H -0.211 1.211 18 H -0.183 1.183 19 C 0.330 3.670 20 O -0.466 6.466 21 N -0.364 5.364 22 C 0.087 3.913 23 C -0.279 4.279 24 C -0.121 4.121 25 N -0.147 5.147 26 N -0.176 5.176 27 H 0.300 0.700 28 C -0.058 4.058 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.126 0.874 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.069 0.931 38 H 0.234 0.766 39 H 0.075 0.925 40 H 0.239 0.761 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.216 0.784 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -4.776 -2.232 1.447 5.466 hybrid contribution 1.726 -0.381 -0.579 1.860 sum -3.049 -2.612 0.868 4.108 Atomic orbital electron populations 1.22428 0.93785 1.03552 1.03386 1.22410 0.94934 0.92770 0.81777 1.21853 1.01994 0.90674 1.04327 1.22435 1.00935 1.02282 0.97697 1.86312 1.72332 1.23867 1.47370 1.18141 0.79246 0.80316 0.82737 1.90748 1.43851 1.71029 1.44082 1.45104 1.52600 1.12454 1.22181 1.18311 0.96559 0.78796 0.90500 0.91980 1.21248 0.92668 1.24637 1.19911 0.91803 1.25658 0.99618 0.95976 0.94902 1.70051 1.15420 1.37206 1.28551 0.85698 0.77879 0.80079 0.78470 1.21090 1.21121 1.18349 1.20803 0.73586 0.81967 0.90601 1.90494 1.49485 1.50884 1.55749 1.45708 1.70176 1.12051 1.08500 1.19189 1.00264 0.90190 0.81630 1.20056 0.93773 0.95335 1.18784 1.24144 0.98626 0.91701 0.97678 1.77282 0.97353 1.14276 1.25825 1.46332 1.04567 1.09537 1.57188 0.70032 1.22845 0.99434 0.86213 0.97328 0.92197 0.88599 0.92303 0.91947 0.87368 0.91307 0.92458 0.88522 0.93137 0.76577 0.92524 0.76053 0.91640 0.92950 0.78377 0.78365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.19 8.37 71.98 0.60 -4.59 16 2 C 0.12 3.81 1.13 -10.79 -0.01 3.79 16 3 C -0.13 -3.08 8.85 71.98 0.64 -2.44 16 4 C -0.18 -5.70 8.37 71.99 0.60 -5.09 16 5 O -0.38 -16.21 9.94 -55.48 -0.55 -16.76 16 6 C 0.64 30.92 8.01 129.79 1.04 31.96 16 7 O -0.60 -30.14 11.54 19.82 0.23 -29.91 16 8 N -0.67 -33.53 4.36 -577.34 -2.52 -36.05 16 9 C 0.26 12.92 2.57 43.50 0.11 13.03 16 10 H 0.06 3.05 7.58 -2.39 -0.02 3.03 16 11 C -0.55 -27.85 8.66 25.60 0.22 -27.63 16 12 H 0.06 3.27 7.81 -2.91 -0.02 3.24 16 13 C 0.04 2.24 5.23 84.65 0.44 2.68 16 14 N -0.88 -46.68 11.58 21.45 0.25 -46.43 16 15 Si 0.95 40.89 29.54 68.60 2.03 42.91 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 17 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 19 C 0.54 25.17 6.00 87.66 0.53 25.70 16 20 O -0.59 -30.28 15.79 -3.02 -0.05 -30.33 16 21 N -0.71 -26.58 5.45 -466.78 -2.54 -29.12 16 22 C 0.21 6.65 6.15 85.63 0.53 7.18 16 23 C -0.27 -6.79 5.47 -20.14 -0.11 -6.90 16 24 C 0.07 1.57 11.96 85.24 1.02 2.59 16 25 N -0.32 -8.01 12.70 -57.02 -0.72 -8.73 16 26 N -0.47 -9.06 7.36 -57.59 -0.42 -9.49 16 27 H 0.45 5.60 8.96 -213.33 -1.91 3.68 16 28 C 0.09 1.95 11.90 83.54 0.99 2.94 16 29 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.06 2.15 5.88 -2.38 -0.01 2.14 16 32 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.11 1.78 8.14 -2.39 -0.02 1.77 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 2.28 5.88 -2.38 -0.01 2.27 16 36 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.40 21.03 7.58 -92.71 -0.70 20.33 16 39 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 40 H 0.40 14.14 8.35 -92.71 -0.77 13.37 16 41 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.20 3.88 8.06 -2.91 -0.02 3.86 16 44 H 0.20 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -69.20 372.00 -0.03 -69.23 By element: Atomic # 1 Polarization: 53.79 SS G_CDS: -2.33 Total: 51.47 kcal Atomic # 6 Polarization: 36.61 SS G_CDS: 6.60 Total: 43.21 kcal Atomic # 7 Polarization: -123.86 SS G_CDS: -5.96 Total: -129.82 kcal Atomic # 8 Polarization: -76.63 SS G_CDS: -0.37 Total: -77.00 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.91 kcal Total: -69.20 -0.03 -69.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180782639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.190 kcal (2) G-P(sol) polarization free energy of solvation -69.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds