Wall clock time and date at job start Fri Apr 10 2020 18:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46803 * 2 1 4 4 N 1.29945 * 126.28423 * 269.97161 * 3 2 1 5 5 O 1.21303 * 110.24756 * 179.72907 * 4 3 2 6 6 C 1.33640 * 109.81067 * 0.46810 * 5 4 3 7 7 C 1.50703 * 126.54863 * 179.80484 * 6 5 4 8 8 O 1.42907 * 109.46640 * 269.68416 * 7 6 5 9 9 C 1.42902 * 113.99773 * 179.97438 * 8 7 6 10 10 C 1.50692 * 109.47021 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00504 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99917 * 180.02562 * 10 9 8 13 13 C 1.47419 * 125.65122 * 0.02562 * 12 10 9 14 14 C 1.54906 * 104.83771 * 155.82601 * 13 12 10 15 15 C 1.55160 * 101.57923 * 37.01273 * 14 13 12 16 16 H 1.08998 * 110.72218 * 83.03862 * 15 14 13 17 17 N 1.46506 * 110.71996 * 206.13944 * 15 14 13 18 18 C 1.36929 * 119.99807 * 204.99776 * 17 15 14 19 19 H 1.08004 * 120.00341 * 0.27647 * 18 17 15 20 20 C 1.38815 * 120.00031 * 179.97438 * 18 17 15 21 21 N 1.31617 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99958 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47093 * 60.00562 * 22 20 18 24 24 H 1.48495 * 109.47002 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47239 * 300.00281 * 22 20 18 26 26 C 1.47026 * 125.65037 * 179.97438 * 12 10 9 27 27 N 1.31126 * 106.89761 * 359.54248 * 6 5 4 28 28 H 1.09000 * 109.46827 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47286 * 299.99880 * 1 2 3 30 30 H 1.08992 * 109.47080 * 60.00452 * 1 2 3 31 31 H 1.09001 * 109.47169 * 239.99766 * 2 1 3 32 32 H 1.09005 * 109.46805 * 119.99420 * 2 1 3 33 33 H 1.08992 * 109.47226 * 149.69190 * 7 6 5 34 34 H 1.08998 * 109.47642 * 29.68311 * 7 6 5 35 35 H 1.09000 * 109.47011 * 60.00329 * 9 8 7 36 36 H 1.08995 * 109.47228 * 300.00493 * 9 8 7 37 37 H 1.09010 * 110.36738 * 36.98544 * 13 12 10 38 38 H 1.09004 * 110.46234 * 274.71469 * 13 12 10 39 39 H 1.08998 * 111.00414 * 278.94187 * 14 13 12 40 40 H 1.09000 * 111.03978 * 155.09909 * 14 13 12 41 41 H 0.96999 * 120.00076 * 24.99839 * 17 15 14 42 42 H 0.97000 * 120.00284 * 179.97438 * 21 20 18 43 43 H 1.08994 * 109.88443 * 61.67933 * 26 12 10 44 44 H 1.09005 * 109.87479 * 300.52293 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2891 2.1457 -1.0475 5 8 2.6724 3.2467 -0.7124 6 6 2.7070 3.3279 0.6211 7 6 3.1294 4.5225 1.4369 8 8 4.5331 4.4506 1.6951 9 6 5.0390 5.5425 2.4658 10 6 6.5206 5.3650 2.6760 11 8 7.0877 4.3990 2.2112 12 7 7.2156 6.2800 3.3805 13 6 6.6553 7.4953 3.9987 14 6 7.6334 7.8427 5.1485 15 6 9.0007 7.4672 4.5184 16 1 9.3747 8.2800 3.8959 17 7 9.9737 7.1232 5.5582 18 6 11.3141 7.2594 5.3137 19 1 11.6539 7.6247 4.3557 20 6 12.2360 6.9340 6.2991 21 7 11.8218 6.4941 7.4683 22 14 14.0646 7.1206 5.9656 23 1 14.3672 8.5388 5.6456 24 1 14.8316 6.7097 7.1690 25 1 14.4485 6.2611 4.8171 26 6 8.6581 6.2307 3.6608 27 7 2.2977 2.1713 1.0840 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 2.5861 4.5278 2.3817 34 1 2.9078 5.4360 0.8852 35 1 4.5352 5.5694 3.4320 36 1 4.8570 6.4769 1.9350 37 1 5.6597 7.2949 4.3951 38 1 6.6175 8.3087 3.2740 39 1 7.4302 7.2361 6.0310 40 1 7.5928 8.9050 5.3894 41 1 9.6684 6.7989 6.4200 42 1 12.4660 6.2663 8.1568 43 1 9.2185 6.2607 2.7265 44 1 8.8980 5.3204 4.2103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186967877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:20 Heat of formation + Delta-G solvation = 11.320332 kcal Electronic energy + Delta-G solvation = -26291.546331 eV Core-core repulsion = 22248.383713 eV Total energy + Delta-G solvation = -4043.162618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.94647 -39.96500 -38.39832 -37.08051 -36.70998 -34.23765 -34.18213 -32.09462 -31.67461 -29.75544 -29.40348 -27.89671 -26.45131 -25.49345 -23.89516 -23.55252 -22.63652 -21.55303 -20.28076 -19.29702 -18.59124 -17.95644 -17.40000 -17.29605 -16.75864 -16.65668 -15.94490 -15.71258 -15.12845 -14.97507 -14.60041 -14.45388 -13.95073 -13.50412 -13.45082 -13.29028 -13.26776 -12.78717 -12.70478 -12.49339 -12.26048 -12.19996 -11.90930 -11.77128 -11.70631 -11.64768 -11.34399 -11.20869 -10.86000 -10.78241 -10.39082 -10.37461 -10.28380 -10.12001 -9.81002 -9.67271 -9.02557 -8.41729 -7.12183 -5.86108 -3.17241 0.65246 1.77037 2.24495 2.69416 2.79710 3.18865 3.40731 3.45785 3.46220 3.60517 3.81839 4.32758 4.47772 4.51680 4.54987 4.67138 4.70767 4.75173 4.76614 4.84048 4.90468 4.95070 5.17317 5.24803 5.32265 5.37526 5.44383 5.46234 5.60213 5.63317 5.66176 5.69910 5.87502 6.04728 6.24910 6.30913 6.31692 6.48845 6.66373 6.82814 7.62253 7.67205 7.79084 8.28193 8.31742 9.43190 9.95924 10.30439 11.35716 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.026277 B = 0.001842 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.306845 B =15197.121042 C =15638.584320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.034 4.034 3 C 0.171 3.829 4 N -0.378 5.378 5 O 0.089 5.911 6 C 0.186 3.814 7 C 0.156 3.844 8 O -0.356 6.356 9 C 0.051 3.949 10 C 0.523 3.477 11 O -0.522 6.522 12 N -0.612 5.612 13 C 0.098 3.902 14 C -0.142 4.142 15 C 0.172 3.828 16 H 0.069 0.931 17 N -0.712 5.712 18 C -0.252 4.252 19 H 0.073 0.927 20 C -0.007 4.007 21 N -0.930 5.930 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.084 3.916 27 N -0.459 5.459 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.387 0.613 42 H 0.258 0.742 43 H 0.059 0.941 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.630 -2.088 -11.768 28.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 C -0.102 4.102 4 N -0.084 5.084 5 O 0.028 5.972 6 C -0.035 4.035 7 C 0.078 3.922 8 O -0.273 6.273 9 C -0.028 4.028 10 C 0.309 3.691 11 O -0.398 6.398 12 N -0.348 5.348 13 C -0.025 4.025 14 C -0.181 4.181 15 C 0.059 3.941 16 H 0.087 0.913 17 N -0.351 5.351 18 C -0.383 4.383 19 H 0.091 0.909 20 C -0.204 4.204 21 N -0.577 5.577 22 Si 0.740 3.260 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.211 1.211 26 C -0.041 4.041 27 N -0.194 5.194 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.222 0.778 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -25.220 -3.381 -12.663 28.422 hybrid contribution 0.886 0.284 0.275 0.970 sum -24.334 -3.097 -12.387 27.481 Atomic orbital electron populations 1.21736 0.93171 1.02945 1.02630 1.19974 0.96836 0.85469 1.05011 1.25938 1.00267 1.00694 0.83296 1.74650 1.17273 0.92607 1.23895 1.85307 1.60340 1.26980 1.24549 1.28143 0.96800 0.96417 0.82178 1.20582 0.84272 0.90005 0.97383 1.88073 1.19894 1.45654 1.73645 1.22292 0.93497 0.90215 0.96814 1.19666 0.87804 0.82596 0.79024 1.90758 1.70724 1.29517 1.48776 1.48500 1.10793 1.23018 1.52515 1.22376 0.97614 0.87009 0.95494 1.23097 0.95567 1.02174 0.97244 1.21218 0.88785 0.93270 0.90791 0.91258 1.42365 1.01979 1.78042 1.12727 1.19224 0.82397 1.37830 0.98811 0.90927 1.24778 0.98253 1.01401 0.95990 1.69646 1.33520 1.49978 1.04522 0.86241 0.84944 0.77828 0.76996 1.21109 1.21622 1.21086 1.23302 0.77573 1.02912 1.00346 1.71891 1.16736 1.01341 1.29473 0.90912 0.91942 0.92342 0.88914 0.88340 0.87966 0.88815 0.89537 0.89551 0.91137 0.91191 0.90452 0.89894 0.77844 0.93257 0.92237 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.90 37.16 0.37 -0.49 16 2 C -0.03 -0.26 6.56 -27.88 -0.18 -0.44 16 3 C 0.17 1.90 7.47 -156.38 -1.17 0.73 16 4 N -0.38 -4.60 12.16 30.90 0.38 -4.22 16 5 O 0.09 1.02 11.31 18.11 0.20 1.22 16 6 C 0.19 1.97 8.14 -13.06 -0.11 1.86 16 7 C 0.16 1.14 6.56 36.01 0.24 1.38 16 8 O -0.36 -4.21 9.86 -55.14 -0.54 -4.75 16 9 C 0.05 0.50 5.42 36.00 0.20 0.69 16 10 C 0.52 8.07 7.93 -10.99 -0.09 7.98 16 11 O -0.52 -10.86 16.83 -14.35 -0.24 -11.10 16 12 N -0.61 -9.01 3.33 -170.52 -0.57 -9.58 16 13 C 0.10 1.04 6.69 -2.53 -0.02 1.02 16 14 C -0.14 -1.91 6.71 -24.58 -0.17 -2.08 16 15 C 0.17 3.11 3.61 -66.09 -0.24 2.87 16 16 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 17 N -0.71 -16.82 5.15 -51.65 -0.27 -17.09 16 18 C -0.25 -6.72 9.96 -15.06 -0.15 -6.87 16 19 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 21 N -0.93 -27.31 13.06 55.49 0.72 -26.58 16 22 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.08 1.53 6.62 -3.06 -0.02 1.51 16 27 N -0.46 -5.47 11.55 -9.87 -0.11 -5.58 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.59 7.84 -51.93 -0.41 0.19 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.53 7.47 -51.92 -0.39 0.15 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 1.11 8.01 -51.93 -0.42 0.69 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.39 9.74 7.76 -40.82 -0.32 9.43 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.07 1.57 8.03 -51.93 -0.42 1.15 16 LS Contribution 378.09 15.07 5.70 5.70 Total: -1.00 -36.16 378.09 -7.75 -43.91 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.56 Total: 3.28 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -1.43 Total: 7.88 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: 0.15 Total: -63.05 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.58 Total: -14.63 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.16 -7.75 -43.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186967877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.227 kcal (2) G-P(sol) polarization free energy of solvation -36.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds