Wall clock time and date at job start Fri Apr 10 2020 18:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46803 * 2 1 4 4 N 1.29945 * 126.28423 * 269.97161 * 3 2 1 5 5 O 1.21303 * 110.24756 * 179.72907 * 4 3 2 6 6 C 1.33640 * 109.81067 * 0.46810 * 5 4 3 7 7 C 1.50703 * 126.54863 * 179.80484 * 6 5 4 8 8 O 1.42907 * 109.46640 * 269.68416 * 7 6 5 9 9 C 1.42902 * 113.99773 * 179.97438 * 8 7 6 10 10 C 1.50692 * 109.47021 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00504 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99917 * 180.02562 * 10 9 8 13 13 C 1.47419 * 125.65122 * 0.02562 * 12 10 9 14 14 C 1.54906 * 104.83771 * 155.82601 * 13 12 10 15 15 C 1.55160 * 101.57923 * 37.01273 * 14 13 12 16 16 H 1.08998 * 110.72218 * 83.03862 * 15 14 13 17 17 N 1.46506 * 110.71996 * 206.13944 * 15 14 13 18 18 C 1.36929 * 119.99807 * 204.99776 * 17 15 14 19 19 H 1.08004 * 120.00341 * 0.27647 * 18 17 15 20 20 C 1.38815 * 120.00031 * 179.97438 * 18 17 15 21 21 N 1.31617 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99958 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47093 * 60.00562 * 22 20 18 24 24 H 1.48495 * 109.47002 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47239 * 300.00281 * 22 20 18 26 26 C 1.47026 * 125.65037 * 179.97438 * 12 10 9 27 27 N 1.31126 * 106.89761 * 359.54248 * 6 5 4 28 28 H 1.09000 * 109.46827 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47286 * 299.99880 * 1 2 3 30 30 H 1.08992 * 109.47080 * 60.00452 * 1 2 3 31 31 H 1.09001 * 109.47169 * 239.99766 * 2 1 3 32 32 H 1.09005 * 109.46805 * 119.99420 * 2 1 3 33 33 H 1.08992 * 109.47226 * 149.69190 * 7 6 5 34 34 H 1.08998 * 109.47642 * 29.68311 * 7 6 5 35 35 H 1.09000 * 109.47011 * 60.00329 * 9 8 7 36 36 H 1.08995 * 109.47228 * 300.00493 * 9 8 7 37 37 H 1.09010 * 110.36738 * 36.98544 * 13 12 10 38 38 H 1.09004 * 110.46234 * 274.71469 * 13 12 10 39 39 H 1.08998 * 111.00414 * 278.94187 * 14 13 12 40 40 H 1.09000 * 111.03978 * 155.09909 * 14 13 12 41 41 H 0.96999 * 120.00076 * 24.99839 * 17 15 14 42 42 H 0.97000 * 120.00284 * 179.97438 * 21 20 18 43 43 H 1.08994 * 109.88443 * 61.67933 * 26 12 10 44 44 H 1.09005 * 109.87479 * 300.52293 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2891 2.1457 -1.0475 5 8 2.6724 3.2467 -0.7124 6 6 2.7070 3.3279 0.6211 7 6 3.1294 4.5225 1.4369 8 8 4.5331 4.4506 1.6951 9 6 5.0390 5.5425 2.4658 10 6 6.5206 5.3650 2.6760 11 8 7.0877 4.3990 2.2112 12 7 7.2156 6.2800 3.3805 13 6 6.6553 7.4953 3.9987 14 6 7.6334 7.8427 5.1485 15 6 9.0007 7.4672 4.5184 16 1 9.3747 8.2800 3.8959 17 7 9.9737 7.1232 5.5582 18 6 11.3141 7.2594 5.3137 19 1 11.6539 7.6247 4.3557 20 6 12.2360 6.9340 6.2991 21 7 11.8218 6.4941 7.4683 22 14 14.0646 7.1206 5.9656 23 1 14.3672 8.5388 5.6456 24 1 14.8316 6.7097 7.1690 25 1 14.4485 6.2611 4.8171 26 6 8.6581 6.2307 3.6608 27 7 2.2977 2.1713 1.0840 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 2.5861 4.5278 2.3817 34 1 2.9078 5.4360 0.8852 35 1 4.5352 5.5694 3.4320 36 1 4.8570 6.4769 1.9350 37 1 5.6597 7.2949 4.3951 38 1 6.6175 8.3087 3.2740 39 1 7.4302 7.2361 6.0310 40 1 7.5928 8.9050 5.3894 41 1 9.6684 6.7989 6.4200 42 1 12.4660 6.2663 8.1568 43 1 9.2185 6.2607 2.7265 44 1 8.8980 5.3204 4.2103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186967877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:20 Heat of formation + Delta-G solvation = -16.823156 kcal Electronic energy + Delta-G solvation = -26292.766724 eV Core-core repulsion = 22248.383713 eV Total energy + Delta-G solvation = -4044.383011 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.75431 -41.10586 -39.29554 -38.31377 -37.47246 -35.93193 -34.94151 -33.41435 -32.72970 -31.19294 -30.34849 -28.98311 -27.51422 -26.15512 -25.65266 -24.27655 -23.87843 -22.23627 -21.67629 -20.44065 -19.40681 -19.29382 -18.75106 -18.25264 -17.69706 -17.51321 -17.05993 -16.66300 -16.31669 -15.99664 -15.76115 -15.37373 -15.19784 -15.00755 -14.70465 -14.31780 -14.07472 -13.93421 -13.63590 -13.47408 -13.27148 -13.08390 -12.99839 -12.86198 -12.71530 -12.52130 -12.50077 -12.42487 -12.36678 -12.15070 -12.03367 -11.76001 -11.53765 -11.19155 -11.03373 -10.89580 -10.85641 -9.65999 -9.09412 -7.97587 -5.27329 -0.12796 0.97917 1.47015 1.49948 1.52593 1.55630 1.57117 1.85428 2.47927 2.55145 2.88956 3.06365 3.33863 3.53516 3.73316 3.78970 3.94024 4.06826 4.11243 4.14915 4.19412 4.21745 4.26882 4.35866 4.38222 4.40962 4.44569 4.57443 4.69414 4.77149 4.83823 4.90027 4.92683 4.98300 5.06844 5.21185 5.22669 5.26907 5.41610 5.51806 5.82148 6.24308 6.56506 6.99855 7.13990 7.31208 8.04519 8.26607 9.25021 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.026277 B = 0.001842 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.306845 B =15197.121042 C =15638.584320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.037 4.037 3 C 0.164 3.836 4 N -0.402 5.402 5 O 0.078 5.922 6 C 0.186 3.814 7 C 0.154 3.846 8 O -0.400 6.400 9 C 0.062 3.938 10 C 0.510 3.490 11 O -0.593 6.593 12 N -0.611 5.611 13 C 0.102 3.898 14 C -0.133 4.133 15 C 0.163 3.837 16 H 0.075 0.925 17 N -0.726 5.726 18 C -0.249 4.249 19 H 0.078 0.922 20 C -0.071 4.071 21 N -0.966 5.966 22 Si 0.971 3.029 23 H -0.272 1.272 24 H -0.296 1.296 25 H -0.284 1.284 26 C 0.094 3.906 27 N -0.486 5.486 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.376 0.624 42 H 0.252 0.748 43 H 0.041 0.959 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.275 -0.065 -12.321 30.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 C -0.108 4.108 4 N -0.111 5.111 5 O 0.021 5.979 6 C -0.035 4.035 7 C 0.077 3.923 8 O -0.319 6.319 9 C -0.016 4.016 10 C 0.300 3.700 11 O -0.473 6.473 12 N -0.346 5.346 13 C -0.019 4.019 14 C -0.171 4.171 15 C 0.053 3.947 16 H 0.093 0.907 17 N -0.364 5.364 18 C -0.381 4.381 19 H 0.096 0.904 20 C -0.264 4.264 21 N -0.616 5.616 22 Si 0.800 3.200 23 H -0.198 1.198 24 H -0.222 1.222 25 H -0.210 1.210 26 C -0.033 4.033 27 N -0.221 5.221 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.143 0.857 36 H 0.152 0.848 37 H 0.135 0.865 38 H 0.122 0.878 39 H 0.084 0.916 40 H 0.125 0.875 41 H 0.208 0.792 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -27.922 -1.284 -13.246 30.931 hybrid contribution 1.654 -0.356 0.394 1.737 sum -26.268 -1.639 -12.852 29.289 Atomic orbital electron populations 1.21698 0.91771 1.04202 1.02071 1.20190 0.97974 0.83777 1.05672 1.26580 0.99486 1.01804 0.82976 1.74629 1.18587 0.93167 1.24723 1.85264 1.60597 1.26856 1.25223 1.28962 0.95519 0.97064 0.82004 1.21079 0.82293 0.90058 0.98848 1.87994 1.22387 1.47127 1.74369 1.22397 0.88521 0.91323 0.99359 1.20933 0.90415 0.81177 0.77460 1.90725 1.72649 1.32371 1.51595 1.48561 1.09073 1.24486 1.52445 1.22714 0.98427 0.85921 0.94817 1.23046 0.92886 1.03409 0.97771 1.21472 0.90340 0.92848 0.90053 0.90656 1.42534 1.02057 1.78278 1.13560 1.19631 0.84057 1.35810 0.98581 0.90414 1.25548 1.02245 1.02437 0.96146 1.69794 1.34321 1.52127 1.05377 0.85260 0.80280 0.78177 0.76330 1.19795 1.22231 1.21046 1.22793 0.80715 1.00965 0.98836 1.71908 1.17925 1.02212 1.30078 0.88733 0.92453 0.92863 0.88095 0.87777 0.85125 0.84514 0.85654 0.84773 0.86453 0.87762 0.91581 0.87528 0.79180 0.93961 0.94025 0.95256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.90 71.98 0.71 -0.76 16 2 C -0.04 -0.54 6.56 29.85 0.20 -0.35 16 3 C 0.16 3.62 7.47 138.46 1.03 4.66 16 4 N -0.40 -9.79 12.16 -60.33 -0.73 -10.52 16 5 O 0.08 1.76 11.31 74.86 0.85 2.61 16 6 C 0.19 3.67 8.14 88.38 0.72 4.38 16 7 C 0.15 1.70 6.56 71.24 0.47 2.16 16 8 O -0.40 -8.38 9.86 -129.94 -1.28 -9.66 16 9 C 0.06 0.92 5.42 71.23 0.39 1.31 16 10 C 0.51 14.97 7.93 87.65 0.69 15.67 16 11 O -0.59 -25.37 16.83 16.01 0.27 -25.10 16 12 N -0.61 -16.81 3.33 -811.79 -2.70 -19.51 16 13 C 0.10 1.66 6.69 86.85 0.58 2.24 16 14 C -0.13 -3.19 6.71 31.99 0.21 -2.97 16 15 C 0.16 5.82 3.61 46.18 0.17 5.99 16 16 H 0.08 2.60 8.09 -2.39 -0.02 2.58 16 17 N -0.73 -34.96 5.15 -317.32 -1.63 -36.59 16 18 C -0.25 -13.50 9.96 84.04 0.84 -12.66 16 19 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 20 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 21 N -0.97 -58.35 13.06 21.65 0.28 -58.07 16 22 Si 0.97 45.83 29.55 68.60 2.03 47.85 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 25 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 26 C 0.09 3.50 6.62 86.73 0.57 4.07 16 27 N -0.49 -11.24 11.55 -303.22 -3.50 -14.74 16 28 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.14 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.13 0.91 7.84 -2.39 -0.02 0.90 16 36 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.12 0.93 7.47 -2.38 -0.02 0.92 16 38 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.07 1.77 8.01 -2.39 -0.02 1.75 16 40 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.38 19.50 7.76 -92.71 -0.72 18.78 16 42 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 43 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.03 1.33 8.03 -2.38 -0.02 1.31 16 Total: -1.00 -86.73 378.09 0.93 -85.80 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.30 Total: 17.75 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 7.05 Total: 20.18 kcal Atomic # 7 Polarization: -131.15 SS G_CDS: -8.29 Total: -139.43 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.17 Total: -32.16 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -86.73 0.93 -85.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186967877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.979 kcal (2) G-P(sol) polarization free energy of solvation -86.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds