Wall clock time and date at job start Fri Apr 10 2020 18:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36934 * 120.00464 * 2 1 4 4 H 1.07994 * 120.00474 * 201.71970 * 3 2 1 5 5 C 1.38822 * 119.99512 * 21.72298 * 3 2 1 6 6 N 1.31614 * 120.00186 * 13.65339 * 5 3 2 7 7 Si 1.86800 * 119.99615 * 193.65330 * 5 3 2 8 8 H 1.48503 * 109.46987 * 90.00070 * 7 5 3 9 9 H 1.48503 * 109.46955 * 209.99887 * 7 5 3 10 10 H 1.48498 * 109.47147 * 329.99955 * 7 5 3 11 11 C 1.46510 * 119.99858 * 179.97438 * 2 1 3 12 12 H 1.08991 * 110.63913 * 176.85869 * 11 2 1 13 13 C 1.55160 * 110.86986 * 53.61092 * 11 2 1 14 14 C 1.55127 * 101.48297 * 205.89890 * 13 11 2 15 15 N 1.47424 * 104.72558 * 37.29438 * 14 13 11 16 16 C 1.34777 * 125.65158 * 155.81078 * 15 14 13 17 17 O 1.21280 * 120.00252 * 179.69650 * 16 15 14 18 18 C 1.50703 * 119.99895 * 359.70103 * 16 15 14 19 19 N 1.46497 * 109.47189 * 179.97438 * 18 16 15 20 20 C 1.46368 * 119.50408 * 270.21378 * 19 18 16 21 21 C 1.53044 * 109.62441 * 144.36184 * 20 19 18 22 22 C 1.50799 * 109.18618 * 46.51726 * 21 20 19 23 23 O 1.21236 * 120.02023 * 145.78797 * 22 21 20 24 24 N 1.34566 * 119.96481 * 325.76602 * 22 21 20 25 25 C 1.34290 * 119.53439 * 89.99919 * 19 18 16 26 26 O 1.21537 * 119.21025 * 5.68916 * 25 19 18 27 27 C 1.47022 * 108.70316 * 335.55622 * 15 14 13 28 28 H 1.08999 * 109.46739 * 274.46191 * 1 2 3 29 29 H 1.09003 * 109.46957 * 34.45696 * 1 2 3 30 30 H 1.08999 * 109.47006 * 154.46182 * 1 2 3 31 31 H 0.97000 * 119.99894 * 180.02562 * 6 5 3 32 32 H 1.09003 * 111.00292 * 324.13613 * 13 11 2 33 33 H 1.09000 * 111.00385 * 87.98986 * 13 11 2 34 34 H 1.08999 * 110.49733 * 278.45457 * 14 13 11 35 35 H 1.08996 * 110.34207 * 156.05970 * 14 13 11 36 36 H 1.09000 * 109.47242 * 59.99273 * 18 16 15 37 37 H 1.08996 * 109.46800 * 299.99535 * 18 16 15 38 38 H 1.09000 * 109.55492 * 24.22292 * 20 19 18 39 39 H 1.09004 * 109.25729 * 264.31278 * 20 19 18 40 40 H 1.08998 * 109.51446 * 286.60237 * 21 20 19 41 41 H 1.09000 * 109.56214 * 166.45976 * 21 20 19 42 42 H 0.96997 * 119.50095 * 184.41088 * 24 22 21 43 43 H 1.09002 * 109.88529 * 120.69900 * 27 15 14 44 44 H 1.08995 * 109.88140 * 241.86661 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1723 1.2190 -0.3461 5 6 1.5296 2.3454 0.4450 6 7 0.3967 2.2718 1.1108 7 14 2.3032 4.0100 0.0987 8 1 1.7960 4.5319 -1.1958 9 1 1.9489 4.9565 1.1869 10 1 3.7795 3.8652 0.0298 11 6 2.1976 -1.2688 0.0006 12 1 3.2716 -1.0924 -0.0554 13 6 1.7290 -2.1781 -1.1661 14 6 2.0621 -3.5881 -0.6117 15 7 1.7543 -3.5070 0.8278 16 6 1.4460 -4.5490 1.6251 17 8 1.2152 -4.3650 2.8014 18 6 1.3881 -5.9428 1.0549 19 7 1.0357 -6.8900 2.1154 20 6 2.0973 -7.5131 2.9074 21 6 1.6252 -7.6878 4.3527 22 6 0.2366 -8.2758 4.3528 23 8 -0.0972 -9.0429 5.2304 24 7 -0.6321 -7.9484 3.3787 25 6 -0.2565 -7.1708 2.3497 26 8 -1.1061 -6.7145 1.6101 27 6 1.8455 -2.1020 1.2510 28 1 -0.3633 0.0799 1.0246 29 1 -0.3633 0.8474 -0.5815 30 1 -0.3633 -0.9273 -0.4430 31 1 -0.0368 3.0821 1.4214 32 1 0.6592 -2.0667 -1.3429 33 1 2.2968 -1.9729 -2.0737 34 1 3.1169 -3.8179 -0.7617 35 1 1.4370 -4.3412 -1.0914 36 1 2.3613 -6.2068 0.6410 37 1 0.6356 -5.9821 0.2674 38 1 2.9850 -6.8809 2.8891 39 1 2.3370 -8.4882 2.4833 40 1 1.6102 -6.7182 4.8505 41 1 2.3044 -8.3575 4.8801 42 1 -1.5430 -8.2792 3.4199 43 1 0.8886 -1.7743 1.6574 44 1 2.6272 -1.9912 2.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972684115.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:32 Heat of formation + Delta-G solvation = -50.861275 kcal Electronic energy + Delta-G solvation = -28134.305471 eV Core-core repulsion = 24088.446456 eV Total energy + Delta-G solvation = -4045.859015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.93192 -39.90566 -39.05541 -37.55262 -36.36361 -34.88487 -34.83353 -32.05095 -31.56376 -29.83228 -28.77883 -27.14261 -26.05733 -25.41076 -23.81850 -22.98801 -22.42828 -19.97862 -19.23991 -18.92632 -18.63780 -17.91745 -17.35706 -17.07873 -16.59794 -16.12762 -15.70631 -15.25267 -14.95844 -14.89310 -14.81000 -14.42205 -14.08814 -13.75899 -13.45231 -13.35666 -13.01264 -12.78270 -12.55335 -12.24372 -12.16438 -12.02465 -11.84223 -11.56621 -10.96821 -10.95794 -10.85117 -10.60253 -10.55643 -10.48405 -10.47036 -10.30931 -10.13338 -9.90556 -9.85364 -9.10332 -8.60588 -8.38492 -6.86837 -5.79008 -3.26176 1.44089 1.99353 2.68394 2.74932 2.84280 3.26607 3.35155 3.41286 3.42915 4.00553 4.14653 4.42069 4.47155 4.56909 4.58666 4.91495 4.92532 4.99115 5.08273 5.22806 5.26225 5.33391 5.44571 5.53682 5.61136 5.71985 5.80256 5.85011 5.94368 6.14093 6.28833 6.32381 6.46095 6.61547 6.80553 6.82849 7.03999 7.20201 7.32466 7.68684 7.70853 7.75596 7.86477 8.25756 8.31907 9.15101 9.77798 10.26145 11.25401 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.025602 B = 0.002600 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.412840 B =10766.796738 C =10998.036898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.585 5.585 3 C -0.263 4.263 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.903 5.903 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.098 3.902 15 N -0.610 5.610 16 C 0.505 3.495 17 O -0.539 6.539 18 C 0.113 3.887 19 N -0.600 5.600 20 C 0.114 3.886 21 C -0.159 4.159 22 C 0.527 3.473 23 O -0.507 6.507 24 N -0.674 5.674 25 C 0.716 3.284 26 O -0.551 6.551 27 C 0.087 3.913 28 H 0.030 0.970 29 H 0.045 0.955 30 H 0.003 0.997 31 H 0.254 0.746 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.425 0.575 43 H 0.072 0.928 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.889 -21.690 -1.586 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.306 5.306 3 C -0.392 4.392 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.547 5.547 7 Si 0.738 3.262 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.026 4.026 15 N -0.344 5.344 16 C 0.291 3.709 17 O -0.416 6.416 18 C -0.014 4.014 19 N -0.336 5.336 20 C -0.009 4.009 21 C -0.199 4.199 22 C 0.315 3.685 23 O -0.379 6.379 24 N -0.343 5.343 25 C 0.418 3.582 26 O -0.425 6.425 27 C -0.037 4.037 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.021 0.979 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.139 0.861 41 H 0.144 0.856 42 H 0.267 0.733 43 H 0.091 0.909 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.187 -21.562 -0.761 22.190 hybrid contribution -0.071 0.944 0.042 0.948 sum 5.116 -20.618 -0.719 21.255 Atomic orbital electron populations 1.20816 0.82341 0.95805 0.99528 1.43941 1.01945 0.99904 1.84781 1.19229 0.97892 0.84969 1.37128 0.91090 1.25052 0.97805 0.98642 0.97975 1.70086 1.18788 1.27228 1.38601 0.86214 0.78697 0.83874 0.77463 1.21423 1.21739 1.20438 1.21352 0.96360 0.85981 0.90075 0.90357 1.23387 1.02978 0.93078 0.99937 1.22434 1.00070 0.99484 0.80570 1.48575 1.67776 1.07944 1.10128 1.20667 0.77516 0.86237 0.86513 1.90699 1.49555 1.85202 1.16182 1.21347 1.04197 0.85927 0.89900 1.46580 1.04156 1.45580 1.37297 1.21634 0.91056 0.99145 0.89081 1.22259 0.93193 1.05372 0.99114 1.20989 0.87671 0.79551 0.80245 1.90788 1.78731 1.32924 1.35491 1.44236 1.16925 1.50263 1.22845 1.15508 0.83216 0.78570 0.80938 1.91019 1.49407 1.54072 1.48016 1.22969 1.02322 0.78382 1.00066 0.95176 0.93579 0.97876 0.93570 0.90252 0.90301 0.91309 0.91155 0.86796 0.86149 0.87927 0.90271 0.86067 0.85634 0.73328 0.90939 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.84 7.82 59.85 0.47 4.31 16 2 N -0.59 -13.92 2.94 -171.38 -0.50 -14.42 16 3 C -0.26 -6.90 9.63 -15.06 -0.14 -7.05 16 4 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 5 C 0.00 0.12 5.08 -17.43 -0.09 0.03 16 6 N -0.90 -25.97 10.67 55.49 0.59 -25.38 16 7 Si 0.91 21.31 29.57 -169.99 -5.03 16.28 16 8 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 C 0.17 3.22 3.43 -66.09 -0.23 3.00 16 12 H 0.08 1.42 7.92 -51.93 -0.41 1.01 16 13 C -0.15 -2.23 6.61 -24.46 -0.16 -2.39 16 14 C 0.10 1.09 6.70 -2.41 -0.02 1.07 16 15 N -0.61 -8.98 3.32 -170.38 -0.57 -9.55 16 16 C 0.50 7.34 7.91 -10.98 -0.09 7.26 16 17 O -0.54 -10.00 16.76 5.56 0.09 -9.91 16 18 C 0.11 1.09 4.84 -5.19 -0.03 1.07 16 19 N -0.60 -5.89 2.28 -181.19 -0.41 -6.30 16 20 C 0.11 0.69 6.58 -4.09 -0.03 0.66 16 21 C -0.16 -1.10 6.28 -27.81 -0.17 -1.28 16 22 C 0.53 5.27 7.76 -11.03 -0.09 5.19 16 23 O -0.51 -6.48 17.93 5.60 0.10 -6.38 16 24 N -0.67 -7.00 5.18 -16.02 -0.08 -7.08 16 25 C 0.72 8.81 8.22 -87.75 -0.72 8.09 16 26 O -0.55 -8.74 16.57 5.33 0.09 -8.65 16 27 C 0.09 1.62 6.51 -3.06 -0.02 1.60 16 28 H 0.03 0.81 7.33 -51.93 -0.38 0.42 16 29 H 0.05 1.19 7.23 -51.93 -0.38 0.82 16 30 H 0.00 0.06 6.04 -51.93 -0.31 -0.25 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.08 1.27 6.07 -51.93 -0.32 0.96 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.62 7.48 -51.93 -0.39 0.23 16 36 H 0.11 0.62 8.06 -51.93 -0.42 0.21 16 37 H 0.12 1.19 6.98 -51.93 -0.36 0.83 16 38 H 0.10 0.50 8.02 -51.93 -0.42 0.08 16 39 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.13 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.43 3.94 8.86 -40.82 -0.36 3.58 16 43 H 0.07 1.61 7.11 -51.93 -0.37 1.24 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 360.00 15.07 5.43 5.43 Total: -1.00 -36.13 360.00 -7.80 -43.93 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.19 Total: 0.48 kcal Atomic # 6 Polarization: 22.86 SS G_CDS: -1.31 Total: 21.55 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: -0.97 Total: -62.73 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: 0.28 Total: -24.94 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.13 -7.80 -43.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972684115.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.934 kcal (2) G-P(sol) polarization free energy of solvation -36.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds