Wall clock time and date at job start Fri Apr 10 2020 18:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36949 * 119.99891 * 2 1 4 4 H 1.08001 * 119.99551 * 200.40086 * 3 2 1 5 5 C 1.38813 * 119.99539 * 20.39878 * 3 2 1 6 6 N 1.31615 * 120.00405 * 15.00131 * 5 3 2 7 7 Si 1.86800 * 119.99594 * 194.99620 * 5 3 2 8 8 H 1.48502 * 109.47079 * 85.00375 * 7 5 3 9 9 H 1.48499 * 109.47249 * 205.00382 * 7 5 3 10 10 H 1.48499 * 109.47481 * 325.00702 * 7 5 3 11 11 C 1.46500 * 120.00184 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.91147 * 183.90240 * 11 2 1 13 13 C 1.55158 * 111.00407 * 307.80128 * 11 2 1 14 14 C 1.54337 * 103.01868 * 153.38094 * 13 11 2 15 15 N 1.47025 * 107.26376 * 338.14142 * 14 13 11 16 16 C 1.34781 * 125.64625 * 178.84674 * 15 14 13 17 17 O 1.21278 * 119.99995 * 179.69184 * 16 15 14 18 18 C 1.50703 * 119.99926 * 359.69412 * 16 15 14 19 19 C 1.52999 * 109.47197 * 179.97438 * 18 16 15 20 20 C 1.52991 * 109.47231 * 180.02562 * 19 18 16 21 21 H 1.09004 * 110.53762 * 302.17577 * 20 19 18 22 22 N 1.47309 * 110.59955 * 65.00181 * 20 19 18 23 23 C 1.34535 * 106.61929 * 118.52703 * 22 20 19 24 24 O 1.21537 * 123.77059 * 180.02562 * 23 22 20 25 25 N 1.33788 * 112.45539 * 0.02562 * 23 22 20 26 26 C 1.34770 * 111.64799 * 359.97438 * 25 23 22 27 27 O 1.21234 * 127.15971 * 180.02562 * 26 25 23 28 28 C 1.47424 * 108.70507 * 358.58859 * 15 14 13 29 29 H 1.08996 * 109.46752 * 275.13768 * 1 2 3 30 30 H 1.08997 * 109.47149 * 35.13530 * 1 2 3 31 31 H 1.09002 * 109.46704 * 155.13678 * 1 2 3 32 32 H 0.96995 * 120.00186 * 179.97438 * 6 5 3 33 33 H 1.08998 * 110.71978 * 271.93956 * 13 11 2 34 34 H 1.09002 * 110.71459 * 35.04105 * 13 11 2 35 35 H 1.08994 * 109.99183 * 218.66957 * 14 13 11 36 36 H 1.08996 * 109.77641 * 97.49721 * 14 13 11 37 37 H 1.09007 * 109.46724 * 59.99966 * 18 16 15 38 38 H 1.08989 * 109.47389 * 300.00161 * 18 16 15 39 39 H 1.09007 * 109.46389 * 59.99995 * 19 18 16 40 40 H 1.08997 * 109.47413 * 300.00902 * 19 18 16 41 41 H 0.97002 * 126.69372 * 298.56637 * 22 20 19 42 42 H 0.96997 * 124.17809 * 179.97438 * 25 23 22 43 43 H 1.09003 * 110.36832 * 143.19455 * 28 15 14 44 44 H 1.09000 * 110.36327 * 265.51243 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1860 0.0000 4 1 3.1790 1.2153 -0.3261 5 6 1.5209 2.3504 0.4190 6 7 0.3883 2.2833 1.0861 7 14 2.2822 4.0127 0.0363 8 1 1.8670 4.4464 -1.3220 9 1 1.8227 5.0097 1.0363 10 1 3.7622 3.9036 0.0901 11 6 2.1976 -1.2687 0.0006 12 1 3.2719 -1.0976 0.0698 13 6 1.7068 -2.1937 1.1455 14 6 2.0191 -3.6067 0.6089 15 7 2.1177 -3.5058 -0.8546 16 6 2.4012 -4.5209 -1.6946 17 8 2.4515 -4.3227 -2.8900 18 6 2.6556 -5.9023 -1.1484 19 6 2.9508 -6.8611 -2.3036 20 6 3.2085 -8.2635 -1.7492 21 1 4.0364 -8.2483 -1.0403 22 7 1.9928 -8.8014 -1.1146 23 6 1.6592 -9.9100 -1.8000 24 8 0.6961 -10.6029 -1.5367 25 7 2.5063 -10.1643 -2.8039 26 6 3.4846 -9.2401 -2.8752 27 8 4.3956 -9.1982 -3.6739 28 6 1.8491 -2.1116 -1.2515 29 1 -0.3633 0.0920 1.0235 30 1 -0.3633 0.8404 -0.5914 31 1 -0.3633 -0.9325 -0.4321 32 1 -0.0510 3.0969 1.3792 33 1 2.2594 -1.9967 2.0641 34 1 0.6358 -2.0718 1.3074 35 1 1.2176 -4.2938 0.8798 36 1 2.9655 -3.9569 1.0210 37 1 1.7746 -6.2467 -0.6069 38 1 3.5098 -5.8739 -0.4720 39 1 3.8317 -6.5166 -2.8455 40 1 2.0964 -6.8893 -2.9798 41 1 1.5237 -8.4286 -0.3517 42 1 2.4263 -10.9205 -3.4060 43 1 2.4848 -1.8266 -2.0897 44 1 0.7980 -1.9872 -1.5120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980347190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:48 Heat of formation + Delta-G solvation = -53.211936 kcal Electronic energy + Delta-G solvation = -27246.968317 eV Core-core repulsion = 23201.007370 eV Total energy + Delta-G solvation = -4045.960947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.79781 -39.95166 -39.05102 -37.70122 -36.80608 -35.00108 -34.88878 -32.65040 -31.66951 -29.88706 -28.78837 -27.50298 -26.11703 -24.46312 -23.37431 -22.74307 -22.32403 -21.73487 -19.40357 -19.03991 -18.81567 -17.48114 -17.23413 -17.12597 -16.90299 -16.23437 -16.17179 -15.97121 -15.36200 -15.19656 -14.64971 -14.60574 -14.13696 -13.78807 -13.50335 -13.23636 -13.15752 -12.72466 -12.52215 -12.46157 -12.23793 -11.98862 -11.54966 -11.43189 -11.41119 -10.99238 -10.85226 -10.84219 -10.71975 -10.57476 -10.53967 -10.31126 -10.01276 -9.96995 -9.93074 -9.75388 -8.65127 -8.44937 -6.90479 -5.82300 -3.27406 1.12084 1.95160 2.55107 2.62671 2.67369 3.05453 3.34463 3.41432 3.41661 3.48936 4.07137 4.29287 4.41883 4.51714 4.73090 4.77896 4.88872 4.92637 5.10928 5.20028 5.26452 5.42824 5.49120 5.53429 5.56442 5.68223 5.71609 5.82492 5.92857 6.21446 6.25521 6.29540 6.42791 6.43573 6.55422 6.69169 6.79013 6.90353 7.29091 7.61711 7.66926 7.67441 7.73022 8.21104 8.28469 9.12604 9.75369 10.22366 11.22609 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.031673 B = 0.002152 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.815507 B =13009.234442 C =13480.782002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.261 4.261 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.905 5.905 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.174 3.826 12 H 0.078 0.922 13 C -0.152 4.152 14 C 0.102 3.898 15 N -0.612 5.612 16 C 0.523 3.477 17 O -0.546 6.546 18 C -0.135 4.135 19 C -0.104 4.104 20 C 0.092 3.908 21 H 0.134 0.866 22 N -0.721 5.721 23 C 0.705 3.295 24 O -0.545 6.545 25 N -0.681 5.681 26 C 0.530 3.470 27 O -0.461 6.461 28 C 0.084 3.916 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.001 0.999 32 H 0.254 0.746 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.442 0.558 42 H 0.433 0.567 43 H 0.072 0.928 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.744 -22.389 -0.670 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.306 5.306 3 C -0.390 4.390 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.549 5.549 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.192 4.192 14 C -0.021 4.021 15 N -0.346 5.346 16 C 0.311 3.689 17 O -0.424 6.424 18 C -0.175 4.175 19 C -0.143 4.143 20 C -0.017 4.017 21 H 0.151 0.849 22 N -0.387 5.387 23 C 0.404 3.596 24 O -0.418 6.418 25 N -0.352 5.352 26 C 0.315 3.685 27 O -0.329 6.329 28 C -0.041 4.041 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.019 0.981 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.287 0.713 42 H 0.275 0.725 43 H 0.091 0.909 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.679 -22.423 -1.534 22.957 hybrid contribution -0.015 0.764 0.088 0.769 sum 4.664 -21.659 -1.446 22.202 Atomic orbital electron populations 1.20818 0.82337 0.95672 0.99628 1.43847 1.01928 0.99890 1.84932 1.19229 0.97102 0.84769 1.37943 0.91107 1.24971 0.97793 0.98476 0.98214 1.70078 1.18813 1.27050 1.38999 0.86241 0.78667 0.83722 0.77701 1.21353 1.21724 1.20490 1.21391 0.96402 0.85842 0.90074 0.90365 1.23223 1.02932 0.92592 1.00502 1.22078 1.00544 0.99534 0.79980 1.48520 1.68640 1.09903 1.07546 1.20062 0.77097 0.85624 0.86072 1.90723 1.52404 1.84128 1.15147 1.21590 1.04056 0.92653 0.99174 1.21559 1.05505 0.89219 0.98038 1.22216 0.89937 0.94907 0.94613 0.84890 1.45618 1.30249 1.27329 1.35490 1.15852 0.82121 0.82023 0.79614 1.91077 1.28140 1.52287 1.70296 1.44331 1.28067 1.29829 1.32957 1.20756 0.80845 0.81913 0.84952 1.90879 1.30073 1.73227 1.38760 1.23051 1.01290 0.79145 1.00574 0.94905 0.93682 0.98076 0.93609 0.90425 0.90488 0.92022 0.91751 0.88986 0.88256 0.88054 0.89713 0.71296 0.72469 0.90920 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.69 7.56 59.85 0.45 4.14 16 2 N -0.59 -13.69 2.96 -171.03 -0.51 -14.20 16 3 C -0.26 -6.83 9.63 -15.05 -0.14 -6.98 16 4 H 0.07 1.81 7.86 -52.49 -0.41 1.40 16 5 C 0.00 0.11 5.06 -17.43 -0.09 0.02 16 6 N -0.91 -25.30 10.67 55.49 0.59 -24.71 16 7 Si 0.91 21.21 29.58 -169.99 -5.03 16.18 16 8 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 C 0.17 3.22 3.54 -65.78 -0.23 2.98 16 12 H 0.08 1.47 7.95 -51.93 -0.41 1.06 16 13 C -0.15 -2.27 6.50 -24.89 -0.16 -2.43 16 14 C 0.10 1.13 6.49 -3.06 -0.02 1.11 16 15 N -0.61 -8.41 3.33 -170.52 -0.57 -8.98 16 16 C 0.52 6.82 7.85 -10.98 -0.09 6.73 16 17 O -0.55 -9.39 16.24 5.56 0.09 -9.29 16 18 C -0.13 -0.95 4.79 -27.88 -0.13 -1.09 16 19 C -0.10 -0.74 4.28 -26.74 -0.11 -0.85 16 20 C 0.09 0.45 3.70 -68.21 -0.25 0.20 16 21 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 22 N -0.72 -3.60 5.94 -59.19 -0.35 -3.95 16 23 C 0.70 5.51 8.99 -88.02 -0.79 4.71 16 24 O -0.54 -6.37 18.04 5.33 0.10 -6.27 16 25 N -0.68 -4.29 5.70 -15.79 -0.09 -4.38 16 26 C 0.53 3.78 8.15 -10.55 -0.09 3.69 16 27 O -0.46 -4.75 18.02 5.60 0.10 -4.65 16 28 C 0.08 1.44 6.47 -2.53 -0.02 1.43 16 29 H 0.03 0.81 7.40 -51.93 -0.38 0.43 16 30 H 0.04 1.14 7.22 -51.93 -0.37 0.77 16 31 H 0.00 0.02 6.38 -51.93 -0.33 -0.32 16 32 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.24 6.99 -51.93 -0.36 0.88 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.47 7.36 -51.93 -0.38 0.09 16 38 H 0.10 0.48 8.14 -51.94 -0.42 0.06 16 39 H 0.10 0.84 8.10 -51.93 -0.42 0.42 16 40 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.44 1.43 8.37 -40.82 -0.34 1.09 16 42 H 0.43 2.02 8.96 -40.82 -0.37 1.66 16 43 H 0.07 1.35 8.04 -51.93 -0.42 0.94 16 44 H 0.07 1.25 6.42 -51.93 -0.33 0.92 16 LS Contribution 362.96 15.07 5.47 5.47 Total: -1.00 -34.67 362.96 -8.08 -42.75 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -6.21 Total: -1.64 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: -1.68 Total: 13.68 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.92 Total: -56.22 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.29 Total: -20.22 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.67 -8.08 -42.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980347190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.461 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds