Wall clock time and date at job start Fri Apr 10 2020 18:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36933 * 119.99849 * 2 1 4 4 H 1.08007 * 119.99909 * 144.66959 * 3 2 1 5 5 C 1.38815 * 120.00233 * 324.66467 * 3 2 1 6 6 N 1.31624 * 119.99532 * 157.56109 * 5 3 2 7 7 Si 1.86796 * 120.00131 * 337.56652 * 5 3 2 8 8 H 1.48499 * 109.46962 * 95.53110 * 7 5 3 9 9 H 1.48502 * 109.46803 * 215.53086 * 7 5 3 10 10 H 1.48499 * 109.46901 * 335.52944 * 7 5 3 11 11 C 1.46503 * 119.99958 * 180.02562 * 2 1 3 12 12 H 1.08994 * 110.63993 * 176.86126 * 11 2 1 13 13 C 1.55154 * 110.87141 * 53.60629 * 11 2 1 14 14 C 1.55139 * 101.48191 * 205.89907 * 13 11 2 15 15 N 1.47422 * 104.72173 * 37.29910 * 14 13 11 16 16 C 1.34778 * 125.65039 * 155.81220 * 15 14 13 17 17 O 1.21277 * 120.00126 * 179.41132 * 16 15 14 18 18 C 1.50700 * 119.99567 * 359.69635 * 16 15 14 19 19 N 1.46502 * 109.46984 * 179.72039 * 18 16 15 20 20 C 1.34765 * 124.17858 * 269.69790 * 19 18 16 21 21 O 1.21231 * 127.15799 * 0.02562 * 20 19 18 22 22 C 1.51583 * 105.68643 * 179.97438 * 20 19 18 23 23 N 1.47312 * 103.59280 * 0.32565 * 22 20 19 24 24 C 1.46500 * 126.69368 * 179.84368 * 23 22 20 25 25 C 1.33793 * 124.17915 * 89.99890 * 19 18 16 26 26 O 1.21547 * 123.76806 * 359.96217 * 25 19 18 27 27 C 1.47019 * 108.70248 * 335.55183 * 15 14 13 28 28 H 1.08995 * 109.46946 * 268.32498 * 1 2 3 29 29 H 1.09003 * 109.46871 * 28.32232 * 1 2 3 30 30 H 1.08997 * 109.47116 * 148.32224 * 1 2 3 31 31 H 0.97006 * 119.99443 * 180.02562 * 6 5 3 32 32 H 1.08994 * 111.00916 * 324.13625 * 13 11 2 33 33 H 1.09000 * 111.00339 * 87.99957 * 13 11 2 34 34 H 1.08995 * 110.49453 * 278.45634 * 14 13 11 35 35 H 1.09005 * 110.33949 * 156.05963 * 14 13 11 36 36 H 1.09001 * 109.47309 * 299.72091 * 18 16 15 37 37 H 1.08998 * 109.47503 * 59.72131 * 18 16 15 38 38 H 1.08997 * 110.76785 * 241.71163 * 22 20 19 39 39 H 1.09009 * 110.43121 * 118.76915 * 22 20 19 40 40 H 1.08998 * 109.47068 * 179.97438 * 24 23 22 41 41 H 1.09006 * 109.46179 * 299.97798 * 24 23 22 42 42 H 1.09002 * 109.47056 * 59.97036 * 24 23 22 43 43 H 1.08997 * 109.88498 * 120.70731 * 27 15 14 44 44 H 1.09003 * 109.88292 * 241.86548 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0805 1.2720 0.5409 5 6 1.6474 2.2774 -0.6953 6 7 2.0198 3.4959 -0.3652 7 14 0.4430 2.0168 -2.0991 8 1 -0.9456 2.1632 -1.5936 9 1 0.6929 3.0261 -3.1594 10 1 0.6244 0.6539 -2.6603 11 6 2.1975 -1.2688 -0.0006 12 1 3.2716 -1.0922 -0.0563 13 6 1.7290 -2.1770 -1.1679 14 6 2.0621 -3.5876 -0.6146 15 7 1.7543 -3.5076 0.8249 16 6 1.4460 -4.5503 1.6214 17 8 1.2202 -4.3679 2.7989 18 6 1.3882 -5.9435 1.0500 19 7 1.0418 -6.8925 2.1110 20 6 1.9452 -7.5261 2.8846 21 8 3.1521 -7.4222 2.8359 22 6 1.1385 -8.3950 3.8290 23 7 -0.2565 -8.1308 3.4363 24 6 -1.4595 -8.7198 4.0295 25 6 -0.2103 -7.2414 2.4279 26 8 -1.1960 -6.8050 1.8664 27 6 1.8455 -2.1029 1.2492 28 1 -0.3633 -0.0300 1.0272 29 1 -0.3633 0.9047 -0.4876 30 1 -0.3633 -0.8745 -0.5397 31 1 1.6685 4.2586 -0.8508 32 1 0.6592 -2.0656 -1.3446 33 1 2.2968 -1.9712 -2.0753 34 1 3.1170 -3.8171 -0.7648 35 1 1.4370 -4.3404 -1.0950 36 1 0.6323 -5.9836 0.2657 37 1 2.3600 -6.2053 0.6315 38 1 1.3077 -8.1006 4.8648 39 1 1.3853 -9.4467 3.6831 40 1 -2.3426 -8.3277 3.5251 41 1 -1.4272 -9.8035 3.9159 42 1 -1.5036 -8.4666 5.0888 43 1 0.8886 -1.7757 1.6559 44 1 2.6272 -1.9927 2.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980350410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:58 Heat of formation + Delta-G solvation = -17.630417 kcal Electronic energy + Delta-G solvation = -28188.308980 eV Core-core repulsion = 24143.890963 eV Total energy + Delta-G solvation = -4044.418017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.65236 -39.86944 -38.89043 -37.69717 -36.45861 -35.40550 -35.01954 -31.96326 -30.85725 -30.07324 -28.71044 -27.54376 -26.56233 -26.14752 -23.74088 -22.76044 -22.52694 -20.91485 -19.49067 -19.29884 -17.99002 -17.62844 -17.13665 -16.95530 -16.76690 -16.22340 -15.90507 -15.35262 -15.24813 -15.01371 -14.66916 -14.42910 -14.33924 -14.04087 -13.75778 -13.24523 -13.14497 -13.01199 -12.88687 -12.77273 -12.47064 -12.33400 -12.15413 -11.93476 -11.51056 -11.25610 -11.01605 -10.92575 -10.64615 -10.55413 -10.54307 -10.23271 -9.96924 -9.66355 -9.60565 -9.38430 -8.58928 -8.50982 -6.96774 -6.05023 -3.46741 1.34032 1.63622 2.50477 2.58141 2.68839 3.13452 3.28071 3.42936 3.47143 3.66448 4.27476 4.36132 4.46755 4.57667 4.71588 4.74664 4.75121 4.85994 4.97306 4.98962 5.07510 5.13843 5.23914 5.33779 5.37742 5.47721 5.58782 5.69592 5.83657 6.00696 6.07806 6.17967 6.29549 6.37601 6.40256 6.60039 6.67764 6.75066 6.76907 7.02501 7.55951 7.75170 7.94946 8.12723 8.29817 8.88174 9.63098 10.00863 11.10138 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.026422 B = 0.002770 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.459530 B =10104.608600 C =10415.456242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.596 5.596 3 C -0.275 4.275 4 H 0.082 0.918 5 C 0.035 3.965 6 N -0.897 5.897 7 Si 0.886 3.114 8 H -0.287 1.287 9 H -0.303 1.303 10 H -0.269 1.269 11 C 0.172 3.828 12 H 0.090 0.910 13 C -0.157 4.157 14 C 0.095 3.905 15 N -0.609 5.609 16 C 0.513 3.487 17 O -0.536 6.536 18 C 0.105 3.895 19 N -0.562 5.562 20 C 0.527 3.473 21 O -0.466 6.466 22 C 0.067 3.933 23 N -0.630 5.630 24 C 0.119 3.881 25 C 0.705 3.295 26 O -0.538 6.538 27 C 0.090 3.910 28 H 0.019 0.981 29 H 0.047 0.953 30 H 0.034 0.966 31 H 0.264 0.736 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.925 -28.106 3.892 28.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.318 5.318 3 C -0.403 4.403 4 H 0.100 0.900 5 C -0.166 4.166 6 N -0.538 5.538 7 Si 0.717 3.283 8 H -0.215 1.215 9 H -0.231 1.231 10 H -0.194 1.194 11 C 0.063 3.937 12 H 0.108 0.892 13 C -0.197 4.197 14 C -0.028 4.028 15 N -0.343 5.343 16 C 0.299 3.701 17 O -0.413 6.413 18 C -0.020 4.020 19 N -0.307 5.307 20 C 0.314 3.686 21 O -0.335 6.335 22 C -0.059 4.059 23 N -0.370 5.370 24 C -0.021 4.021 25 C 0.408 3.592 26 O -0.411 6.411 27 C -0.034 4.034 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.109 0.891 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.056 -27.559 4.226 28.048 hybrid contribution -0.712 0.082 -0.801 1.075 sum -3.767 -27.477 3.425 27.945 Atomic orbital electron populations 1.21362 0.84748 0.99133 0.98547 1.44009 1.00555 1.01375 1.85841 1.18802 1.08183 0.86241 1.27059 0.90016 1.25425 0.98215 0.95135 0.97813 1.69876 1.45993 0.97674 1.40270 0.86826 0.80401 0.77666 0.83454 1.21526 1.23075 1.19373 1.21461 0.97116 0.85367 0.89752 0.89172 1.23436 1.02811 0.93039 1.00405 1.22498 1.00576 0.99476 0.80225 1.48443 1.67862 1.07730 1.10288 1.20245 0.77591 0.85811 0.86423 1.90717 1.49649 1.85052 1.15872 1.21443 1.05201 0.86221 0.89132 1.45863 1.08356 1.41248 1.35205 1.20858 0.87027 0.79829 0.80842 1.90832 1.11543 1.63283 1.67875 1.22467 0.80640 1.01854 1.00900 1.47401 1.07054 1.46133 1.36391 1.21550 0.84524 0.97731 0.98333 1.15762 0.82905 0.79646 0.80919 1.90996 1.35300 1.58460 1.56342 1.22750 1.02365 0.78625 0.99698 0.96329 0.93484 0.94782 0.92578 0.90521 0.89824 0.90829 0.91042 0.85673 0.85745 0.85811 0.85930 0.89094 0.91330 0.91277 0.91005 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.32 8.47 59.85 0.51 2.83 16 2 N -0.60 -13.75 2.53 -171.39 -0.43 -14.18 16 3 C -0.27 -7.50 9.88 -15.06 -0.15 -7.65 16 4 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 5 C 0.04 0.99 5.31 -17.43 -0.09 0.90 16 6 N -0.90 -27.09 13.97 55.49 0.78 -26.32 16 7 Si 0.89 21.87 24.94 -169.99 -4.24 17.63 16 8 H -0.29 -6.98 6.67 56.52 0.38 -6.60 16 9 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 C 0.17 3.21 3.43 -66.10 -0.23 2.98 16 12 H 0.09 1.68 7.95 -51.93 -0.41 1.26 16 13 C -0.16 -2.36 6.63 -24.46 -0.16 -2.52 16 14 C 0.10 1.13 6.70 -2.41 -0.02 1.11 16 15 N -0.61 -9.29 3.32 -170.38 -0.57 -9.86 16 16 C 0.51 8.13 7.92 -10.98 -0.09 8.04 16 17 O -0.54 -10.62 16.76 5.56 0.09 -10.53 16 18 C 0.11 1.21 5.18 -5.19 -0.03 1.19 16 19 N -0.56 -6.72 2.09 -122.02 -0.26 -6.97 16 20 C 0.53 5.62 8.31 -10.56 -0.09 5.54 16 21 O -0.47 -6.16 17.75 5.60 0.10 -6.06 16 22 C 0.07 0.42 7.66 -4.32 -0.03 0.39 16 23 N -0.63 -5.28 3.42 -187.94 -0.64 -5.92 16 24 C 0.12 0.61 11.33 59.85 0.68 1.28 16 25 C 0.71 8.78 8.31 -88.02 -0.73 8.05 16 26 O -0.54 -8.48 16.92 5.32 0.09 -8.39 16 27 C 0.09 1.61 6.51 -3.06 -0.02 1.59 16 28 H 0.02 0.40 7.84 -51.93 -0.41 -0.01 16 29 H 0.05 1.11 3.05 -51.93 -0.16 0.95 16 30 H 0.03 0.65 6.00 -51.93 -0.31 0.34 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.08 1.23 6.03 -51.93 -0.31 0.91 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.66 7.49 -51.93 -0.39 0.27 16 36 H 0.13 1.24 7.58 -51.93 -0.39 0.85 16 37 H 0.12 1.12 8.00 -51.93 -0.42 0.70 16 38 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.12 0.36 8.14 -51.92 -0.42 -0.06 16 40 H 0.09 0.58 7.67 -51.93 -0.40 0.18 16 41 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 42 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 1.44 6.97 -51.93 -0.36 1.08 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 360.18 15.07 5.43 5.43 Total: -1.00 -37.71 360.18 -6.20 -43.91 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -6.10 Total: -2.47 kcal Atomic # 6 Polarization: 24.18 SS G_CDS: -0.45 Total: 23.74 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -1.12 Total: -63.25 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: 0.28 Total: -24.98 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.24 Total: 17.63 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.71 -6.20 -43.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980350410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.284 kcal (2) G-P(sol) polarization free energy of solvation -37.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds