Wall clock time and date at job start Fri Apr 10 2020 18:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36933 * 119.99849 * 2 1 4 4 H 1.08007 * 119.99909 * 144.66959 * 3 2 1 5 5 C 1.38815 * 120.00233 * 324.66467 * 3 2 1 6 6 N 1.31624 * 119.99532 * 157.56109 * 5 3 2 7 7 Si 1.86796 * 120.00131 * 337.56652 * 5 3 2 8 8 H 1.48499 * 109.46962 * 95.53110 * 7 5 3 9 9 H 1.48502 * 109.46803 * 215.53086 * 7 5 3 10 10 H 1.48499 * 109.46901 * 335.52944 * 7 5 3 11 11 C 1.46503 * 119.99958 * 180.02562 * 2 1 3 12 12 H 1.08994 * 110.63993 * 176.86126 * 11 2 1 13 13 C 1.55154 * 110.87141 * 53.60629 * 11 2 1 14 14 C 1.55139 * 101.48191 * 205.89907 * 13 11 2 15 15 N 1.47422 * 104.72173 * 37.29910 * 14 13 11 16 16 C 1.34778 * 125.65039 * 155.81220 * 15 14 13 17 17 O 1.21277 * 120.00126 * 179.41132 * 16 15 14 18 18 C 1.50700 * 119.99567 * 359.69635 * 16 15 14 19 19 N 1.46502 * 109.46984 * 179.72039 * 18 16 15 20 20 C 1.34765 * 124.17858 * 269.69790 * 19 18 16 21 21 O 1.21231 * 127.15799 * 0.02562 * 20 19 18 22 22 C 1.51583 * 105.68643 * 179.97438 * 20 19 18 23 23 N 1.47312 * 103.59280 * 0.32565 * 22 20 19 24 24 C 1.46500 * 126.69368 * 179.84368 * 23 22 20 25 25 C 1.33793 * 124.17915 * 89.99890 * 19 18 16 26 26 O 1.21547 * 123.76806 * 359.96217 * 25 19 18 27 27 C 1.47019 * 108.70248 * 335.55183 * 15 14 13 28 28 H 1.08995 * 109.46946 * 268.32498 * 1 2 3 29 29 H 1.09003 * 109.46871 * 28.32232 * 1 2 3 30 30 H 1.08997 * 109.47116 * 148.32224 * 1 2 3 31 31 H 0.97006 * 119.99443 * 180.02562 * 6 5 3 32 32 H 1.08994 * 111.00916 * 324.13625 * 13 11 2 33 33 H 1.09000 * 111.00339 * 87.99957 * 13 11 2 34 34 H 1.08995 * 110.49453 * 278.45634 * 14 13 11 35 35 H 1.09005 * 110.33949 * 156.05963 * 14 13 11 36 36 H 1.09001 * 109.47309 * 299.72091 * 18 16 15 37 37 H 1.08998 * 109.47503 * 59.72131 * 18 16 15 38 38 H 1.08997 * 110.76785 * 241.71163 * 22 20 19 39 39 H 1.09009 * 110.43121 * 118.76915 * 22 20 19 40 40 H 1.08998 * 109.47068 * 179.97438 * 24 23 22 41 41 H 1.09006 * 109.46179 * 299.97798 * 24 23 22 42 42 H 1.09002 * 109.47056 * 59.97036 * 24 23 22 43 43 H 1.08997 * 109.88498 * 120.70731 * 27 15 14 44 44 H 1.09003 * 109.88292 * 241.86548 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0805 1.2720 0.5409 5 6 1.6474 2.2774 -0.6953 6 7 2.0198 3.4959 -0.3652 7 14 0.4430 2.0168 -2.0991 8 1 -0.9456 2.1632 -1.5936 9 1 0.6929 3.0261 -3.1594 10 1 0.6244 0.6539 -2.6603 11 6 2.1975 -1.2688 -0.0006 12 1 3.2716 -1.0922 -0.0563 13 6 1.7290 -2.1770 -1.1679 14 6 2.0621 -3.5876 -0.6146 15 7 1.7543 -3.5076 0.8249 16 6 1.4460 -4.5503 1.6214 17 8 1.2202 -4.3679 2.7989 18 6 1.3882 -5.9435 1.0500 19 7 1.0418 -6.8925 2.1110 20 6 1.9452 -7.5261 2.8846 21 8 3.1521 -7.4222 2.8359 22 6 1.1385 -8.3950 3.8290 23 7 -0.2565 -8.1308 3.4363 24 6 -1.4595 -8.7198 4.0295 25 6 -0.2103 -7.2414 2.4279 26 8 -1.1960 -6.8050 1.8664 27 6 1.8455 -2.1029 1.2492 28 1 -0.3633 -0.0300 1.0272 29 1 -0.3633 0.9047 -0.4876 30 1 -0.3633 -0.8745 -0.5397 31 1 1.6685 4.2586 -0.8508 32 1 0.6592 -2.0656 -1.3446 33 1 2.2968 -1.9712 -2.0753 34 1 3.1170 -3.8171 -0.7648 35 1 1.4370 -4.3404 -1.0950 36 1 0.6323 -5.9836 0.2657 37 1 2.3600 -6.2053 0.6315 38 1 1.3077 -8.1006 4.8648 39 1 1.3853 -9.4467 3.6831 40 1 -2.3426 -8.3277 3.5251 41 1 -1.4272 -9.8035 3.9159 42 1 -1.5036 -8.4666 5.0888 43 1 0.8886 -1.7757 1.6559 44 1 2.6272 -1.9927 2.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980350410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:57 Heat of formation + Delta-G solvation = -46.244761 kcal Electronic energy + Delta-G solvation = -28189.549791 eV Core-core repulsion = 24143.890963 eV Total energy + Delta-G solvation = -4045.658828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.45534 -41.12378 -39.76878 -39.10483 -37.32189 -36.71517 -36.21274 -33.87691 -32.10000 -31.09229 -29.84393 -28.51600 -28.06757 -27.21265 -25.27153 -23.97908 -23.51592 -21.81606 -20.95466 -20.43335 -19.01861 -18.91496 -18.50601 -18.00058 -17.77773 -17.67689 -16.84508 -16.81836 -16.22295 -16.01012 -15.78197 -15.47505 -15.30234 -15.05692 -14.97313 -14.74238 -14.60470 -14.42385 -14.23080 -13.71644 -13.46538 -13.39573 -13.31027 -13.22159 -13.03046 -12.55096 -12.44538 -12.39963 -12.14795 -12.06468 -11.75077 -11.63086 -11.46192 -11.40205 -10.81061 -10.67592 -9.99742 -9.78107 -8.90236 -8.22707 -5.61882 0.55374 0.87293 1.32067 1.38131 1.42015 1.54189 1.65120 1.98245 2.07796 2.41016 2.98773 3.00008 3.23008 3.35101 3.61464 3.72200 3.90593 4.04152 4.09459 4.20848 4.23000 4.23971 4.29745 4.35523 4.35711 4.47831 4.64735 4.68003 4.68619 4.79105 4.88135 4.92560 4.93338 4.95814 5.13274 5.21900 5.32681 5.36989 5.87085 5.97622 6.13093 6.24668 6.38390 6.86102 6.90038 6.95206 7.55476 7.96606 8.96602 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.026422 B = 0.002770 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.459530 B =10104.608600 C =10415.456242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.608 5.608 3 C -0.265 4.265 4 H 0.044 0.956 5 C -0.024 4.024 6 N -0.949 5.949 7 Si 0.953 3.047 8 H -0.281 1.281 9 H -0.309 1.309 10 H -0.245 1.245 11 C 0.166 3.834 12 H 0.085 0.915 13 C -0.148 4.148 14 C 0.100 3.900 15 N -0.608 5.608 16 C 0.506 3.494 17 O -0.586 6.586 18 C 0.109 3.891 19 N -0.570 5.570 20 C 0.519 3.481 21 O -0.498 6.498 22 C 0.076 3.924 23 N -0.622 5.622 24 C 0.112 3.888 25 C 0.694 3.306 26 O -0.583 6.583 27 C 0.100 3.900 28 H 0.013 0.987 29 H 0.032 0.968 30 H 0.066 0.934 31 H 0.264 0.736 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.145 0.855 37 H 0.154 0.846 38 H 0.146 0.854 39 H 0.168 0.832 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.046 0.954 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.587 -32.187 2.728 32.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.331 5.331 3 C -0.395 4.395 4 H 0.062 0.938 5 C -0.220 4.220 6 N -0.593 5.593 7 Si 0.782 3.218 8 H -0.209 1.209 9 H -0.238 1.238 10 H -0.169 1.169 11 C 0.058 3.942 12 H 0.103 0.897 13 C -0.187 4.187 14 C -0.022 4.022 15 N -0.342 5.342 16 C 0.294 3.706 17 O -0.467 6.467 18 C -0.016 4.016 19 N -0.314 5.314 20 C 0.309 3.691 21 O -0.370 6.370 22 C -0.048 4.048 23 N -0.361 5.361 24 C -0.027 4.027 25 C 0.396 3.604 26 O -0.460 6.460 27 C -0.025 4.025 28 H 0.031 0.969 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.130 0.870 36 H 0.163 0.837 37 H 0.172 0.828 38 H 0.164 0.836 39 H 0.185 0.815 40 H 0.091 0.909 41 H 0.120 0.880 42 H 0.105 0.895 43 H 0.064 0.936 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.712 -31.740 3.066 32.103 hybrid contribution -0.447 1.304 -0.263 1.404 sum -4.159 -30.436 2.803 30.846 Atomic orbital electron populations 1.21388 0.83989 0.99768 0.98638 1.44043 1.01164 1.01604 1.86306 1.18679 1.06939 0.88144 1.25722 0.93793 1.26091 1.01010 0.94622 1.00280 1.70013 1.48755 0.98678 1.41814 0.85735 0.78134 0.78343 0.79622 1.20902 1.23811 1.16860 1.21562 0.96569 0.84233 0.91834 0.89689 1.23334 1.02565 0.93667 0.99175 1.22755 1.03217 0.98472 0.77717 1.48506 1.67510 1.06293 1.11881 1.21113 0.76232 0.87339 0.85887 1.90686 1.51803 1.85994 1.18191 1.21566 1.07413 0.83312 0.89313 1.46049 1.08699 1.41144 1.35553 1.21583 0.86797 0.79774 0.80919 1.90815 1.12813 1.64506 1.68816 1.22740 0.78342 1.03270 1.00489 1.47678 1.08844 1.44672 1.34871 1.21838 0.82681 0.99426 0.98749 1.16061 0.82457 0.80209 0.81678 1.90954 1.36512 1.60328 1.58162 1.22364 1.00311 0.80824 0.99027 0.96860 0.94937 0.91584 0.92695 0.90960 0.88249 0.88051 0.87049 0.83747 0.82831 0.83637 0.81496 0.90903 0.87978 0.89509 0.93579 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.55 8.47 127.77 1.08 5.63 16 2 N -0.61 -28.12 2.53 -696.15 -1.76 -29.88 16 3 C -0.27 -14.92 9.88 84.03 0.83 -14.09 16 4 H 0.04 2.74 8.06 -2.91 -0.02 2.71 16 5 C -0.02 -1.36 5.31 84.86 0.45 -0.91 16 6 N -0.95 -59.33 13.97 21.65 0.30 -59.03 16 7 Si 0.95 45.31 24.94 68.60 1.71 47.02 16 8 H -0.28 -13.01 6.67 99.48 0.66 -12.34 16 9 H -0.31 -14.93 7.11 99.48 0.71 -14.23 16 10 H -0.25 -10.59 7.11 99.48 0.71 -9.89 16 11 C 0.17 6.07 3.43 46.18 0.16 6.23 16 12 H 0.08 3.17 7.95 -2.39 -0.02 3.15 16 13 C -0.15 -3.97 6.63 32.07 0.21 -3.76 16 14 C 0.10 1.97 6.70 86.94 0.58 2.55 16 15 N -0.61 -17.61 3.32 -811.34 -2.70 -20.30 16 16 C 0.51 15.50 7.92 87.66 0.69 16.19 16 17 O -0.59 -23.55 16.76 -3.02 -0.05 -23.60 16 18 C 0.11 2.26 5.18 85.63 0.44 2.70 16 19 N -0.57 -12.63 2.09 -777.21 -1.63 -14.25 16 20 C 0.52 9.99 8.31 87.94 0.73 10.72 16 21 O -0.50 -12.36 17.75 -2.88 -0.05 -12.41 16 22 C 0.08 0.68 7.66 85.76 0.66 1.34 16 23 N -0.62 -8.79 3.42 -866.94 -2.96 -11.76 16 24 C 0.11 0.83 11.33 127.77 1.45 2.28 16 25 C 0.69 16.29 8.31 179.44 1.49 17.78 16 26 O -0.58 -18.09 16.92 -3.86 -0.07 -18.16 16 27 C 0.10 3.63 6.51 86.73 0.56 4.20 16 28 H 0.01 0.57 7.84 -2.39 -0.02 0.55 16 29 H 0.03 1.49 3.05 -2.39 -0.01 1.48 16 30 H 0.07 2.39 6.00 -2.39 -0.01 2.38 16 31 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 32 H 0.07 2.04 6.03 -2.39 -0.01 2.02 16 33 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.11 1.43 7.49 -2.38 -0.02 1.41 16 36 H 0.14 2.43 7.58 -2.39 -0.02 2.41 16 37 H 0.15 2.24 8.00 -2.39 -0.02 2.22 16 38 H 0.15 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.17 0.12 8.14 -2.38 -0.02 0.10 16 40 H 0.07 0.85 7.67 -2.39 -0.02 0.83 16 41 H 0.10 0.11 8.14 -2.38 -0.02 0.09 16 42 H 0.09 0.36 8.14 -2.39 -0.02 0.35 16 43 H 0.05 1.90 6.97 -2.39 -0.02 1.89 16 44 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -88.08 360.18 3.12 -84.95 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 0.98 Total: 6.55 kcal Atomic # 6 Polarization: 41.52 SS G_CDS: 9.35 Total: 50.87 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -8.75 Total: -135.22 kcal Atomic # 8 Polarization: -54.00 SS G_CDS: -0.17 Total: -54.17 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.71 Total: 47.02 kcal Total: -88.08 3.12 -84.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980350410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.707 kcal (2) G-P(sol) polarization free energy of solvation -88.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds