Wall clock time and date at job start Fri Apr 10 2020 18:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36937 * 119.99902 * 2 1 4 4 H 1.08005 * 120.00008 * 203.00021 * 3 2 1 5 5 C 1.38811 * 119.99828 * 22.99111 * 3 2 1 6 6 N 1.31617 * 120.00465 * 11.64616 * 5 3 2 7 7 Si 1.86807 * 119.99706 * 191.63625 * 5 3 2 8 8 H 1.48499 * 109.46870 * 60.00645 * 7 5 3 9 9 H 1.48499 * 109.46816 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47441 * 300.00611 * 7 5 3 11 11 C 1.46498 * 119.99868 * 180.02562 * 2 1 3 12 12 C 1.53037 * 109.45966 * 299.99287 * 11 2 1 13 13 C 1.53188 * 109.31200 * 181.38827 * 12 11 2 14 14 N 1.46930 * 108.77826 * 305.36652 * 13 12 11 15 15 C 1.34776 * 120.62951 * 233.58764 * 14 13 12 16 16 O 1.21281 * 120.00509 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99661 * 179.97438 * 15 14 13 18 18 H 1.09010 * 109.45861 * 39.97775 * 17 15 14 19 19 C 1.53042 * 109.46823 * 280.00286 * 17 15 14 20 20 C 1.50811 * 109.18039 * 286.68257 * 19 17 15 21 21 O 1.21235 * 120.01862 * 145.78602 * 20 19 17 22 22 N 1.34562 * 119.96401 * 325.76240 * 20 19 17 23 23 C 1.34343 * 120.98863 * 4.43828 * 22 20 19 24 24 O 1.21540 * 119.20523 * 192.04307 * 23 22 20 25 25 N 1.34291 * 121.58242 * 12.01849 * 23 22 20 26 26 C 1.46922 * 118.73546 * 53.86048 * 14 13 12 27 27 C 1.53032 * 109.46280 * 60.06722 * 11 2 1 28 28 H 1.09005 * 109.46784 * 273.84592 * 1 2 3 29 29 H 1.08997 * 109.47474 * 33.84080 * 1 2 3 30 30 H 1.09001 * 109.47295 * 153.85188 * 1 2 3 31 31 H 0.96993 * 120.00382 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.44459 * 180.02562 * 11 2 1 33 33 H 1.08999 * 109.49370 * 61.43839 * 12 11 2 34 34 H 1.08998 * 109.49931 * 301.34142 * 12 11 2 35 35 H 1.09000 * 109.58769 * 185.58110 * 13 12 11 36 36 H 1.09001 * 109.58916 * 65.15639 * 13 12 11 37 37 H 1.08997 * 109.52103 * 166.77347 * 19 17 15 38 38 H 1.09000 * 109.51701 * 46.58505 * 19 17 15 39 39 H 0.96997 * 119.50369 * 184.45915 * 22 20 19 40 40 H 0.96995 * 119.53333 * 185.71150 * 25 23 22 41 41 H 1.08997 * 109.59214 * 65.92897 * 26 14 13 42 42 H 1.08998 * 109.58885 * 186.35568 * 26 14 13 43 43 H 1.09000 * 109.49628 * 298.56358 * 27 11 2 44 44 H 1.08997 * 109.50249 * 58.62658 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1653 1.2231 -0.3655 5 6 1.5383 2.3403 0.4696 6 7 0.3978 2.2623 1.1220 7 14 2.3343 4.0045 0.1756 8 1 2.4682 4.2381 -1.2847 9 1 1.4890 5.0697 0.7723 10 1 3.6786 4.0286 0.8061 11 6 2.1975 -1.2687 -0.0006 12 6 1.8277 -2.0715 1.2488 13 6 2.6213 -3.3817 1.2624 14 7 2.3850 -4.0910 -0.0024 15 6 1.9588 -5.3696 -0.0034 16 8 1.7672 -5.9458 1.0464 17 6 1.7204 -6.0833 -1.3091 18 1 2.5051 -5.8166 -2.0173 19 6 0.3603 -5.6695 -1.8757 20 6 -0.7326 -6.3207 -1.0658 21 8 -1.7793 -5.7378 -0.8802 22 7 -0.5456 -7.5493 -0.5497 23 6 0.6365 -8.1766 -0.6680 24 8 0.7112 -9.3578 -0.3919 25 7 1.7373 -7.5299 -1.0846 26 6 2.6279 -3.3818 -1.2660 27 6 1.8289 -2.0697 -1.2513 28 1 -0.3633 0.0689 1.0254 29 1 -0.3634 0.8535 -0.5723 30 1 -0.3634 -0.9225 -0.4529 31 1 -0.0292 3.0689 1.4504 32 1 3.2690 -1.0691 0.0000 33 1 0.7604 -2.2927 1.2363 34 1 2.0690 -1.4907 2.1390 35 1 2.2900 -4.0009 2.0960 36 1 3.6843 -3.1640 1.3662 37 1 0.2851 -5.9915 -2.9143 38 1 0.2575 -4.5857 -1.8210 39 1 -1.2753 -7.9886 -0.0856 40 1 2.5549 -8.0284 -1.2391 41 1 3.6914 -3.1640 -1.3644 42 1 2.3009 -4.0010 -2.1013 43 1 0.7616 -2.2910 -1.2402 44 1 2.0704 -1.4875 -2.1406 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985680951.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:07 Heat of formation + Delta-G solvation = -90.756127 kcal Electronic energy + Delta-G solvation = -28993.770526 eV Core-core repulsion = 24946.181541 eV Total energy + Delta-G solvation = -4047.588986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.96571 -41.08622 -39.99639 -39.01217 -36.99592 -36.71179 -35.40287 -33.97811 -32.58512 -31.56610 -31.30018 -28.01227 -27.39877 -25.97610 -24.62249 -24.07124 -23.78754 -21.85600 -21.03743 -19.89077 -19.28616 -18.77052 -18.73527 -18.30492 -17.43605 -17.31626 -16.91704 -16.68245 -16.32847 -15.80596 -15.68015 -15.53222 -15.32677 -15.05997 -14.90987 -14.65892 -14.42394 -14.00740 -13.80989 -13.41071 -13.31709 -13.09299 -13.03360 -12.76652 -12.58917 -12.32568 -12.21257 -12.06580 -11.95395 -11.79265 -11.60939 -11.52045 -11.40087 -11.38073 -11.17132 -10.58703 -10.27280 -9.68833 -8.73017 -7.78274 -5.26671 0.59435 1.31096 1.48053 1.49455 1.51137 1.57568 1.76489 2.13064 2.21894 2.53922 3.19524 3.26240 3.35631 3.40405 3.65983 3.91357 3.99779 4.12858 4.16257 4.22911 4.33444 4.43559 4.45184 4.62002 4.72568 4.80685 4.84013 4.89217 4.95593 5.03075 5.12940 5.19187 5.29168 5.37604 5.54745 5.64792 5.70317 5.75512 5.75913 6.14096 6.36313 6.38766 6.39512 7.00970 7.09585 7.19366 7.93275 8.37672 9.24871 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.026707 B = 0.003072 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.158541 B = 9111.658018 C = 9467.851964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.611 5.611 3 C -0.258 4.258 4 H 0.079 0.921 5 C -0.058 4.058 6 N -0.944 5.944 7 Si 0.967 3.033 8 H -0.275 1.275 9 H -0.303 1.303 10 H -0.275 1.275 11 C 0.171 3.829 12 C -0.134 4.134 13 C 0.125 3.875 14 N -0.596 5.596 15 C 0.483 3.517 16 O -0.578 6.578 17 C 0.129 3.871 18 H 0.200 0.800 19 C -0.149 4.149 20 C 0.518 3.482 21 O -0.537 6.537 22 N -0.674 5.674 23 C 0.725 3.275 24 O -0.595 6.595 25 N -0.690 5.690 26 C 0.106 3.894 27 C -0.141 4.141 28 H -0.011 1.011 29 H 0.014 0.986 30 H 0.027 0.973 31 H 0.244 0.756 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.180 0.820 38 H 0.137 0.863 39 H 0.425 0.575 40 H 0.439 0.561 41 H 0.102 0.898 42 H 0.130 0.870 43 H 0.053 0.947 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.312 -17.860 -12.576 23.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.333 5.333 3 C -0.388 4.388 4 H 0.097 0.903 5 C -0.252 4.252 6 N -0.591 5.591 7 Si 0.796 3.204 8 H -0.201 1.201 9 H -0.229 1.229 10 H -0.201 1.201 11 C 0.065 3.935 12 C -0.174 4.174 13 C 0.001 3.999 14 N -0.329 5.329 15 C 0.270 3.730 16 O -0.457 6.457 17 C 0.020 3.980 18 H 0.217 0.783 19 C -0.189 4.189 20 C 0.308 3.692 21 O -0.412 6.412 22 N -0.341 5.341 23 C 0.425 3.575 24 O -0.472 6.472 25 N -0.348 5.348 26 C -0.016 4.016 27 C -0.180 4.180 28 H 0.007 0.993 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.197 0.803 38 H 0.155 0.845 39 H 0.265 0.735 40 H 0.282 0.718 41 H 0.120 0.880 42 H 0.148 0.852 43 H 0.072 0.928 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.620 -18.130 -11.807 22.626 hybrid contribution -0.433 1.158 1.190 1.716 sum 6.186 -16.973 -10.617 20.954 Atomic orbital electron populations 1.20359 0.83555 0.95511 0.96609 1.44198 1.01613 1.01577 1.85894 1.19608 0.98594 0.86591 1.33985 0.90342 1.25818 0.98543 1.02001 0.98879 1.70249 1.20194 1.27408 1.41259 0.85339 0.77542 0.79611 0.77921 1.20101 1.22935 1.20097 1.20590 0.95680 0.84542 0.92733 1.22309 0.99002 0.95798 1.00325 1.21457 1.00274 0.91705 0.86434 1.48255 1.64639 1.11407 1.08557 1.21753 0.76693 0.82147 0.92422 1.90747 1.52944 1.66828 1.35181 1.21441 1.01808 0.80003 0.94732 0.78343 1.22525 0.88210 1.04888 1.03283 1.21603 0.89517 0.79920 0.78195 1.90823 1.30158 1.62308 1.57886 1.44244 1.15057 1.19125 1.55715 1.15680 0.81009 0.84230 0.76587 1.91012 1.85071 1.15656 1.55472 1.44668 1.12583 1.07335 1.70254 1.22311 1.02037 0.92624 0.84595 1.22419 1.00217 0.96288 0.99115 0.99264 0.96715 0.95514 0.94637 0.91415 0.94629 0.93568 0.91420 0.89404 0.80257 0.84483 0.73475 0.71822 0.88004 0.85247 0.92805 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.99 8.03 127.77 1.03 10.02 16 2 N -0.61 -28.28 2.81 -702.64 -1.97 -30.25 16 3 C -0.26 -13.28 9.59 84.03 0.81 -12.47 16 4 H 0.08 3.80 7.82 -2.91 -0.02 3.77 16 5 C -0.06 -3.16 5.12 84.86 0.43 -2.72 16 6 N -0.94 -55.79 10.64 21.65 0.23 -55.56 16 7 Si 0.97 43.76 29.57 68.60 2.03 45.79 16 8 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 9 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 11 C 0.17 5.78 2.55 45.01 0.11 5.90 16 12 C -0.13 -4.53 5.34 30.67 0.16 -4.37 16 13 C 0.12 3.21 6.43 86.36 0.56 3.77 16 14 N -0.60 -11.34 2.97 -818.07 -2.43 -13.77 16 15 C 0.48 9.55 6.59 87.66 0.58 10.13 16 16 O -0.58 -17.51 15.56 -3.03 -0.05 -17.56 16 17 C 0.13 1.12 2.77 44.28 0.12 1.24 16 18 H 0.20 -0.65 6.78 -2.38 -0.02 -0.66 16 19 C -0.15 -1.41 5.26 29.90 0.16 -1.25 16 20 C 0.52 10.74 7.45 87.73 0.65 11.39 16 21 O -0.54 -15.90 17.93 -2.89 -0.05 -15.95 16 22 N -0.67 -14.03 5.18 -441.63 -2.29 -16.32 16 23 C 0.72 15.10 7.98 179.34 1.43 16.53 16 24 O -0.59 -16.67 17.97 -3.84 -0.07 -16.74 16 25 N -0.69 -8.45 4.91 -462.62 -2.27 -10.72 16 26 C 0.11 1.27 5.76 86.51 0.50 1.77 16 27 C -0.14 -3.22 5.34 30.82 0.16 -3.06 16 28 H -0.01 -0.61 7.42 -2.38 -0.02 -0.63 16 29 H 0.01 0.76 7.22 -2.39 -0.02 0.74 16 30 H 0.03 1.11 6.46 -2.39 -0.02 1.10 16 31 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.07 2.23 7.86 -2.39 -0.02 2.21 16 33 H 0.03 1.35 7.72 -2.39 -0.02 1.33 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 2.02 7.01 -2.39 -0.02 2.00 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.18 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.14 1.37 7.13 -2.39 -0.02 1.35 16 39 H 0.42 8.79 8.86 -92.71 -0.82 7.97 16 40 H 0.44 3.37 8.90 -92.71 -0.83 2.54 16 41 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.13 0.27 4.97 -2.39 -0.01 0.26 16 43 H 0.05 1.37 6.72 -2.39 -0.02 1.36 16 44 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -86.07 350.94 -0.74 -86.82 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -0.58 Total: 7.41 kcal Atomic # 6 Polarization: 30.16 SS G_CDS: 6.70 Total: 36.86 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -8.73 Total: -126.63 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -0.17 Total: -50.25 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -86.07 -0.74 -86.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985680951.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.939 kcal (2) G-P(sol) polarization free energy of solvation -86.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds