Wall clock time and date at job start Fri Apr 10 2020 18:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36941 * 119.99983 * 2 1 4 4 H 1.07989 * 119.99794 * 202.98888 * 3 2 1 5 5 C 1.38816 * 120.00016 * 22.99580 * 3 2 1 6 6 N 1.31620 * 119.99674 * 11.63718 * 5 3 2 7 7 Si 1.86795 * 119.99945 * 191.63559 * 5 3 2 8 8 H 1.48506 * 109.47071 * 59.99760 * 7 5 3 9 9 H 1.48503 * 109.47320 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47310 * 299.99940 * 7 5 3 11 11 C 1.46498 * 119.99969 * 179.97438 * 2 1 3 12 12 C 1.53046 * 109.46033 * 300.00234 * 11 2 1 13 13 C 1.53188 * 109.30768 * 181.38437 * 12 11 2 14 14 N 1.46920 * 108.78130 * 305.36080 * 13 12 11 15 15 C 1.34772 * 120.63589 * 233.59503 * 14 13 12 16 16 O 1.21280 * 120.00001 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00494 * 180.02562 * 15 14 13 18 18 N 1.46500 * 109.47545 * 179.97438 * 17 15 14 19 19 C 1.34765 * 124.17739 * 89.99722 * 18 17 15 20 20 O 1.21242 * 127.15666 * 0.02562 * 19 18 17 21 21 C 1.51583 * 105.68657 * 179.97438 * 19 18 17 22 22 N 1.47319 * 103.58914 * 0.02562 * 21 19 18 23 23 C 1.33791 * 124.17603 * 269.69909 * 18 17 15 24 24 O 1.21538 * 123.77176 * 0.03694 * 23 18 17 25 25 C 1.46927 * 118.73694 * 53.86119 * 14 13 12 26 26 C 1.53042 * 109.45910 * 60.07036 * 11 2 1 27 27 H 1.09004 * 109.47022 * 273.85006 * 1 2 3 28 28 H 1.09000 * 109.47122 * 33.84416 * 1 2 3 29 29 H 1.08998 * 109.47488 * 153.84345 * 1 2 3 30 30 H 0.97004 * 119.99834 * 180.02562 * 6 5 3 31 31 H 1.08995 * 109.44950 * 180.02562 * 11 2 1 32 32 H 1.09003 * 109.49675 * 61.43420 * 12 11 2 33 33 H 1.08996 * 109.52350 * 301.35064 * 12 11 2 34 34 H 1.09010 * 109.58349 * 185.57647 * 13 12 11 35 35 H 1.08996 * 109.70787 * 65.22757 * 13 12 11 36 36 H 1.09008 * 109.46802 * 299.99930 * 17 15 14 37 37 H 1.09005 * 109.46902 * 59.99252 * 17 15 14 38 38 H 1.08993 * 110.60073 * 118.52447 * 21 19 18 39 39 H 1.08999 * 110.59911 * 241.32574 * 21 19 18 40 40 H 0.97005 * 126.68562 * 180.02562 * 22 21 19 41 41 H 1.09007 * 109.58387 * 65.92692 * 25 14 13 42 42 H 1.08998 * 109.58776 * 186.35309 * 25 14 13 43 43 H 1.09005 * 109.49444 * 298.56334 * 26 11 2 44 44 H 1.08994 * 109.50015 * 58.65863 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1653 1.2230 -0.3653 5 6 1.5384 2.3404 0.4696 6 7 0.3979 2.2623 1.1220 7 14 2.3343 4.0045 0.1758 8 1 2.4683 4.2381 -1.2846 9 1 1.4885 5.0699 0.7715 10 1 3.6786 4.0285 0.8063 11 6 2.1975 -1.2687 0.0006 12 6 1.8275 -2.0705 1.2506 13 6 2.6212 -3.3807 1.2652 14 7 2.3849 -4.0910 0.0010 15 6 1.9586 -5.3695 0.0009 16 8 1.7669 -5.9449 1.0512 17 6 1.7214 -6.0847 -1.3042 18 7 1.2662 -7.4513 -1.0366 19 6 -0.0268 -7.8052 -0.8989 20 8 -0.9961 -7.0805 -0.9709 21 6 -0.0174 -9.2982 -0.6367 22 7 1.4144 -9.6444 -0.6585 23 6 2.0825 -8.5030 -0.9043 24 8 3.2928 -8.4341 -0.9921 25 6 2.6278 -3.3829 -1.2632 26 6 1.8289 -2.0708 -1.2496 27 1 -0.3633 0.0690 1.0254 28 1 -0.3633 0.8535 -0.5723 29 1 -0.3634 -0.9224 -0.4530 30 1 -0.0295 3.0690 1.4499 31 1 3.2690 -1.0691 0.0009 32 1 0.7603 -2.2917 1.2383 33 1 2.0684 -1.4893 2.1407 34 1 2.2898 -3.9993 2.0994 35 1 3.6844 -3.1652 1.3701 36 1 0.9607 -5.5535 -1.8765 37 1 2.6494 -6.1164 -1.8750 38 1 -0.4500 -9.5189 0.3390 39 1 -0.5550 -9.8289 -1.4224 40 1 1.7998 -10.5247 -0.5262 41 1 3.6914 -3.1652 -1.3615 42 1 2.3008 -4.0028 -2.0979 43 1 0.7616 -2.2920 -1.2383 44 1 2.0710 -1.4895 -2.1393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985782556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:16 Heat of formation + Delta-G solvation = -37.637061 kcal Electronic energy + Delta-G solvation = -28338.665347 eV Core-core repulsion = 24293.379777 eV Total energy + Delta-G solvation = -4045.285570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.64802 -40.00527 -38.83603 -37.57744 -36.37522 -35.11757 -34.92157 -32.28705 -31.05049 -29.88289 -28.77453 -27.76458 -25.99422 -24.84372 -23.24314 -22.95571 -22.32762 -21.19617 -19.79742 -18.69389 -18.33890 -17.79363 -17.05933 -16.79123 -16.65508 -16.14284 -15.59215 -15.39471 -15.15937 -15.00196 -14.46090 -14.32713 -14.03958 -13.93233 -13.61329 -13.57055 -13.26559 -13.12929 -12.53818 -12.37720 -12.15108 -11.73785 -11.48972 -11.30249 -10.96393 -10.86184 -10.77639 -10.66582 -10.57833 -10.38822 -10.26043 -10.14620 -9.90588 -9.85096 -9.66474 -9.50957 -8.59121 -8.49670 -6.74740 -5.71525 -3.18266 1.35093 1.75246 2.52918 2.62747 2.79748 3.12242 3.38485 3.44096 3.44644 3.65100 4.32904 4.39649 4.48267 4.59935 4.75713 4.83705 4.95439 5.10571 5.19881 5.27044 5.35446 5.39384 5.49407 5.58373 5.75742 5.87568 5.99702 6.13569 6.23657 6.34369 6.37955 6.51996 6.58011 6.68569 6.80180 6.97108 6.99973 7.05062 7.39974 7.41099 7.74743 7.78293 7.81364 8.09404 8.40884 9.24508 9.87884 10.37427 11.33162 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.030639 B = 0.002663 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.651401 B =10511.942872 C =10821.207477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.596 5.596 3 C -0.256 4.256 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.907 5.907 7 Si 0.905 3.095 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.179 3.821 12 C -0.144 4.144 13 C 0.115 3.885 14 N -0.600 5.600 15 C 0.503 3.497 16 O -0.540 6.540 17 C 0.101 3.899 18 N -0.562 5.562 19 C 0.524 3.476 20 O -0.462 6.462 21 C 0.066 3.934 22 N -0.728 5.728 23 C 0.708 3.292 24 O -0.541 6.541 25 C 0.106 3.894 26 C -0.149 4.149 27 H 0.027 0.973 28 H 0.042 0.958 29 H -0.003 1.003 30 H 0.253 0.747 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.442 0.558 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.701 -23.666 -6.789 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.317 5.317 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.071 3.929 12 C -0.185 4.185 13 C -0.007 4.007 14 N -0.333 5.333 15 C 0.289 3.711 16 O -0.417 6.417 17 C -0.025 4.025 18 N -0.308 5.308 19 C 0.311 3.689 20 O -0.331 6.331 21 C -0.061 4.061 22 N -0.393 5.393 23 C 0.409 3.591 24 O -0.414 6.414 25 C -0.017 4.017 26 C -0.189 4.189 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.016 0.984 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.286 0.714 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.596 -23.235 -6.258 24.071 hybrid contribution 0.425 0.717 0.023 0.833 sum 1.020 -22.518 -6.236 23.388 Atomic orbital electron populations 1.20737 0.82725 0.95438 0.99114 1.43946 1.01787 1.00134 1.85858 1.19174 0.98274 0.85539 1.35571 0.91482 1.25040 0.97801 0.98530 0.98279 1.70062 1.18478 1.27262 1.39428 0.86335 0.78485 0.83848 0.77826 1.21124 1.21691 1.20976 1.20276 0.96050 0.86085 0.90518 1.22510 1.00008 0.94298 1.01648 1.21729 0.99973 0.93743 0.85302 1.48118 1.65343 1.11263 1.08602 1.20572 0.77384 0.82141 0.91011 1.90690 1.52025 1.65998 1.33031 1.21547 1.04289 0.79716 0.96900 1.45845 1.09066 1.09211 1.66642 1.20905 0.82390 0.90802 0.74797 1.90862 1.36447 1.59410 1.46381 1.22443 0.84292 0.92930 1.06482 1.45338 1.06683 1.10269 1.77027 1.15751 0.85124 0.80886 0.77374 1.91023 1.10428 1.84491 1.55442 1.21989 1.00883 0.94399 0.84401 1.22575 1.00145 0.94551 1.01598 0.95505 0.93915 0.98441 0.93718 0.91839 0.92191 0.90520 0.89701 0.91488 0.85588 0.85550 0.85730 0.85770 0.71404 0.90739 0.90612 0.91750 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.02 8.03 59.85 0.48 4.50 16 2 N -0.60 -14.43 2.81 -173.44 -0.49 -14.91 16 3 C -0.26 -6.86 9.59 -15.06 -0.14 -7.00 16 4 H 0.07 1.74 7.82 -52.49 -0.41 1.33 16 5 C 0.00 0.05 5.12 -17.43 -0.09 -0.04 16 6 N -0.91 -26.35 10.64 55.49 0.59 -25.76 16 7 Si 0.91 21.65 29.57 -169.99 -5.03 16.62 16 8 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 9 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 C 0.18 3.44 2.55 -67.89 -0.17 3.26 16 12 C -0.14 -2.62 5.34 -26.61 -0.14 -2.76 16 13 C 0.11 1.78 6.43 -3.72 -0.02 1.76 16 14 N -0.60 -8.53 2.97 -172.51 -0.51 -9.04 16 15 C 0.50 7.46 7.77 -10.99 -0.09 7.37 16 16 O -0.54 -9.87 15.84 5.56 0.09 -9.78 16 17 C 0.10 1.11 4.53 -5.19 -0.02 1.09 16 18 N -0.56 -6.26 2.09 -122.02 -0.26 -6.52 16 19 C 0.52 5.34 8.32 -10.56 -0.09 5.25 16 20 O -0.46 -6.18 17.76 5.59 0.10 -6.08 16 21 C 0.07 0.33 7.97 -4.31 -0.03 0.30 16 22 N -0.73 -4.66 6.58 -65.73 -0.43 -5.10 16 23 C 0.71 7.86 8.62 -88.02 -0.76 7.10 16 24 O -0.54 -7.87 17.48 5.33 0.09 -7.77 16 25 C 0.11 1.27 6.37 -3.49 -0.02 1.25 16 26 C -0.15 -2.29 5.34 -26.39 -0.14 -2.43 16 27 H 0.03 0.72 7.42 -51.93 -0.39 0.33 16 28 H 0.04 1.13 7.22 -51.93 -0.37 0.75 16 29 H 0.00 -0.06 6.46 -51.93 -0.34 -0.40 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.06 1.22 7.86 -51.93 -0.41 0.81 16 32 H 0.06 1.17 7.72 -51.93 -0.40 0.77 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.08 1.40 7.01 -51.92 -0.36 1.03 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.13 1.18 7.57 -51.92 -0.39 0.79 16 37 H 0.13 1.16 7.64 -51.93 -0.40 0.76 16 38 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.44 1.62 8.96 -40.82 -0.37 1.25 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.67 5.93 -51.93 -0.31 0.36 16 43 H 0.06 1.06 6.72 -51.93 -0.35 0.71 16 44 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 358.53 15.07 5.40 5.40 Total: -1.00 -36.80 358.53 -7.85 -44.64 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.16 Total: -1.35 kcal Atomic # 6 Polarization: 20.89 SS G_CDS: -1.24 Total: 19.65 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -1.10 Total: -61.33 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: 0.28 Total: -23.64 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.80 -7.85 -44.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985782556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.007 kcal (2) G-P(sol) polarization free energy of solvation -36.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds