Wall clock time and date at job start Fri Apr 10 2020 18:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36941 * 119.99983 * 2 1 4 4 H 1.07989 * 119.99794 * 202.98888 * 3 2 1 5 5 C 1.38816 * 120.00016 * 22.99580 * 3 2 1 6 6 N 1.31620 * 119.99674 * 11.63718 * 5 3 2 7 7 Si 1.86795 * 119.99945 * 191.63559 * 5 3 2 8 8 H 1.48506 * 109.47071 * 59.99760 * 7 5 3 9 9 H 1.48503 * 109.47320 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47310 * 299.99940 * 7 5 3 11 11 C 1.46498 * 119.99969 * 179.97438 * 2 1 3 12 12 C 1.53046 * 109.46033 * 300.00234 * 11 2 1 13 13 C 1.53188 * 109.30768 * 181.38437 * 12 11 2 14 14 N 1.46920 * 108.78130 * 305.36080 * 13 12 11 15 15 C 1.34772 * 120.63589 * 233.59503 * 14 13 12 16 16 O 1.21280 * 120.00001 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00494 * 180.02562 * 15 14 13 18 18 N 1.46500 * 109.47545 * 179.97438 * 17 15 14 19 19 C 1.34765 * 124.17739 * 89.99722 * 18 17 15 20 20 O 1.21242 * 127.15666 * 0.02562 * 19 18 17 21 21 C 1.51583 * 105.68657 * 179.97438 * 19 18 17 22 22 N 1.47319 * 103.58914 * 0.02562 * 21 19 18 23 23 C 1.33791 * 124.17603 * 269.69909 * 18 17 15 24 24 O 1.21538 * 123.77176 * 0.03694 * 23 18 17 25 25 C 1.46927 * 118.73694 * 53.86119 * 14 13 12 26 26 C 1.53042 * 109.45910 * 60.07036 * 11 2 1 27 27 H 1.09004 * 109.47022 * 273.85006 * 1 2 3 28 28 H 1.09000 * 109.47122 * 33.84416 * 1 2 3 29 29 H 1.08998 * 109.47488 * 153.84345 * 1 2 3 30 30 H 0.97004 * 119.99834 * 180.02562 * 6 5 3 31 31 H 1.08995 * 109.44950 * 180.02562 * 11 2 1 32 32 H 1.09003 * 109.49675 * 61.43420 * 12 11 2 33 33 H 1.08996 * 109.52350 * 301.35064 * 12 11 2 34 34 H 1.09010 * 109.58349 * 185.57647 * 13 12 11 35 35 H 1.08996 * 109.70787 * 65.22757 * 13 12 11 36 36 H 1.09008 * 109.46802 * 299.99930 * 17 15 14 37 37 H 1.09005 * 109.46902 * 59.99252 * 17 15 14 38 38 H 1.08993 * 110.60073 * 118.52447 * 21 19 18 39 39 H 1.08999 * 110.59911 * 241.32574 * 21 19 18 40 40 H 0.97005 * 126.68562 * 180.02562 * 22 21 19 41 41 H 1.09007 * 109.58387 * 65.92692 * 25 14 13 42 42 H 1.08998 * 109.58776 * 186.35309 * 25 14 13 43 43 H 1.09005 * 109.49444 * 298.56334 * 26 11 2 44 44 H 1.08994 * 109.50015 * 58.65863 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1653 1.2230 -0.3653 5 6 1.5384 2.3404 0.4696 6 7 0.3979 2.2623 1.1220 7 14 2.3343 4.0045 0.1758 8 1 2.4683 4.2381 -1.2846 9 1 1.4885 5.0699 0.7715 10 1 3.6786 4.0285 0.8063 11 6 2.1975 -1.2687 0.0006 12 6 1.8275 -2.0705 1.2506 13 6 2.6212 -3.3807 1.2652 14 7 2.3849 -4.0910 0.0010 15 6 1.9586 -5.3695 0.0009 16 8 1.7669 -5.9449 1.0512 17 6 1.7214 -6.0847 -1.3042 18 7 1.2662 -7.4513 -1.0366 19 6 -0.0268 -7.8052 -0.8989 20 8 -0.9961 -7.0805 -0.9709 21 6 -0.0174 -9.2982 -0.6367 22 7 1.4144 -9.6444 -0.6585 23 6 2.0825 -8.5030 -0.9043 24 8 3.2928 -8.4341 -0.9921 25 6 2.6278 -3.3829 -1.2632 26 6 1.8289 -2.0708 -1.2496 27 1 -0.3633 0.0690 1.0254 28 1 -0.3633 0.8535 -0.5723 29 1 -0.3634 -0.9224 -0.4530 30 1 -0.0295 3.0690 1.4499 31 1 3.2690 -1.0691 0.0009 32 1 0.7603 -2.2917 1.2383 33 1 2.0684 -1.4893 2.1407 34 1 2.2898 -3.9993 2.0994 35 1 3.6844 -3.1652 1.3701 36 1 0.9607 -5.5535 -1.8765 37 1 2.6494 -6.1164 -1.8750 38 1 -0.4500 -9.5189 0.3390 39 1 -0.5550 -9.8289 -1.4224 40 1 1.7998 -10.5247 -0.5262 41 1 3.6914 -3.1652 -1.3615 42 1 2.3008 -4.0028 -2.0979 43 1 0.7616 -2.2920 -1.2383 44 1 2.0710 -1.4895 -2.1393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985782556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:15 Heat of formation + Delta-G solvation = -65.561395 kcal Electronic energy + Delta-G solvation = -28339.876237 eV Core-core repulsion = 24293.379777 eV Total energy + Delta-G solvation = -4046.496460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.40359 -41.18509 -39.68294 -39.00323 -37.20471 -36.74832 -35.71141 -33.99359 -32.36155 -31.51014 -29.72947 -28.43275 -28.03098 -26.32307 -24.25629 -23.98072 -23.85107 -22.24470 -21.03173 -19.93316 -19.10205 -18.78373 -18.75285 -17.86203 -17.63327 -17.04993 -16.95427 -16.49977 -16.31142 -16.14213 -15.73071 -15.29658 -15.17261 -15.14522 -14.97249 -14.75309 -14.66616 -14.12485 -13.98130 -13.84514 -13.30354 -13.20373 -13.10693 -12.79026 -12.61312 -12.36260 -12.25493 -12.16615 -12.08728 -11.82772 -11.70863 -11.60964 -11.39174 -11.23692 -10.71084 -10.59079 -10.40259 -9.75580 -8.75748 -7.80241 -5.28864 0.60941 1.01169 1.41111 1.47879 1.49909 1.56321 1.76010 2.10535 2.28373 2.52160 3.03316 3.32151 3.33403 3.61065 3.72748 3.86121 4.05097 4.11474 4.14665 4.22886 4.30896 4.32016 4.33767 4.37561 4.55074 4.64972 4.70233 4.77918 4.81357 4.91100 4.97902 5.08728 5.24879 5.33354 5.48722 5.58217 5.66973 5.72159 5.82615 5.97527 6.25806 6.35073 6.36223 6.94652 7.08602 7.17181 7.90117 8.35043 9.23011 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.030639 B = 0.002663 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.651401 B =10511.942872 C =10821.207477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.611 5.611 3 C -0.260 4.260 4 H 0.076 0.924 5 C -0.057 4.057 6 N -0.942 5.942 7 Si 0.969 3.031 8 H -0.277 1.277 9 H -0.299 1.299 10 H -0.275 1.275 11 C 0.172 3.828 12 C -0.131 4.131 13 C 0.125 3.875 14 N -0.601 5.601 15 C 0.497 3.503 16 O -0.581 6.581 17 C 0.100 3.900 18 N -0.569 5.569 19 C 0.514 3.486 20 O -0.502 6.502 21 C 0.077 3.923 22 N -0.707 5.707 23 C 0.700 3.300 24 O -0.583 6.583 25 C 0.111 3.889 26 C -0.137 4.137 27 H -0.006 1.006 28 H 0.015 0.985 29 H 0.025 0.975 30 H 0.246 0.754 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.169 0.831 40 H 0.456 0.544 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.053 0.947 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.657 -25.907 -8.673 27.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.333 5.333 3 C -0.390 4.390 4 H 0.094 0.906 5 C -0.252 4.252 6 N -0.590 5.590 7 Si 0.798 3.202 8 H -0.203 1.203 9 H -0.226 1.226 10 H -0.201 1.201 11 C 0.066 3.934 12 C -0.172 4.172 13 C 0.002 3.998 14 N -0.334 5.334 15 C 0.285 3.715 16 O -0.462 6.462 17 C -0.025 4.025 18 N -0.315 5.315 19 C 0.304 3.696 20 O -0.374 6.374 21 C -0.049 4.049 22 N -0.372 5.372 23 C 0.401 3.599 24 O -0.459 6.459 25 C -0.011 4.011 26 C -0.177 4.177 27 H 0.012 0.988 28 H 0.034 0.966 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.186 0.814 40 H 0.303 0.697 41 H 0.114 0.886 42 H 0.134 0.866 43 H 0.071 0.929 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.569 -25.550 -8.171 26.871 hybrid contribution 0.119 1.341 0.634 1.488 sum 1.688 -24.209 -7.537 25.412 Atomic orbital electron populations 1.20386 0.83392 0.95490 0.96849 1.44192 1.01733 1.01436 1.85946 1.19583 0.98565 0.86608 1.34213 0.90628 1.25830 0.98579 1.02013 0.98768 1.70250 1.20088 1.27496 1.41125 0.85306 0.77573 0.79474 0.77859 1.20261 1.22576 1.20109 1.20546 0.95651 0.84669 0.92572 1.22288 0.99136 0.95442 1.00287 1.21493 1.00257 0.91954 0.86128 1.48201 1.65024 1.11388 1.08761 1.21285 0.76218 0.82081 0.91940 1.90664 1.53680 1.66945 1.34873 1.21666 1.06074 0.79946 0.94841 1.46021 1.09705 1.09238 1.66490 1.21751 0.81454 0.92829 0.73579 1.90842 1.37340 1.60960 1.48242 1.22705 0.83575 0.89366 1.09233 1.45316 1.07093 1.09683 1.75120 1.15969 0.84730 0.81827 0.77418 1.90991 1.12125 1.85208 1.57597 1.22159 1.01634 0.92847 0.84484 1.22386 1.00051 0.95880 0.99388 0.98789 0.96579 0.95707 0.94504 0.91576 0.94195 0.92933 0.90962 0.89740 0.83722 0.83298 0.83331 0.81408 0.69696 0.88600 0.86600 0.92862 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.26 8.03 127.77 1.03 10.29 16 2 N -0.61 -29.89 2.81 -702.63 -1.97 -31.86 16 3 C -0.26 -13.95 9.59 84.03 0.81 -13.15 16 4 H 0.08 3.86 7.82 -2.92 -0.02 3.84 16 5 C -0.06 -3.21 5.12 84.86 0.43 -2.77 16 6 N -0.94 -56.56 10.64 21.65 0.23 -56.33 16 7 Si 0.97 44.95 29.57 68.60 2.03 46.98 16 8 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 9 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 C 0.17 6.51 2.55 45.02 0.11 6.62 16 12 C -0.13 -4.85 5.34 30.67 0.16 -4.68 16 13 C 0.12 3.81 6.43 86.36 0.56 4.37 16 14 N -0.60 -16.06 2.97 -818.08 -2.43 -18.48 16 15 C 0.50 14.08 7.77 87.66 0.68 14.76 16 16 O -0.58 -21.11 15.84 -3.03 -0.05 -21.16 16 17 C 0.10 1.98 4.53 85.63 0.39 2.37 16 18 N -0.57 -11.60 2.09 -777.20 -1.63 -13.22 16 19 C 0.51 9.43 8.32 87.94 0.73 10.17 16 20 O -0.50 -12.86 17.76 -2.91 -0.05 -12.91 16 21 C 0.08 0.50 7.97 85.76 0.68 1.18 16 22 N -0.71 -6.93 6.58 -480.31 -3.16 -10.10 16 23 C 0.70 14.19 8.62 179.44 1.55 15.73 16 24 O -0.58 -16.22 17.48 -3.83 -0.07 -16.28 16 25 C 0.11 2.27 6.37 86.51 0.55 2.82 16 26 C -0.14 -3.96 5.34 30.82 0.16 -3.80 16 27 H -0.01 -0.35 7.42 -2.38 -0.02 -0.37 16 28 H 0.02 0.86 7.22 -2.39 -0.02 0.84 16 29 H 0.02 1.08 6.46 -2.39 -0.02 1.07 16 30 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.07 2.46 7.86 -2.39 -0.02 2.44 16 32 H 0.04 1.61 7.72 -2.39 -0.02 1.59 16 33 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.07 2.42 7.01 -2.38 -0.02 2.40 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.15 2.31 7.57 -2.38 -0.02 2.29 16 37 H 0.15 2.26 7.64 -2.38 -0.02 2.24 16 38 H 0.15 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.17 -0.23 8.14 -2.39 -0.02 -0.25 16 40 H 0.46 1.90 8.96 -92.70 -0.83 1.07 16 41 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.12 1.53 5.93 -2.39 -0.01 1.51 16 43 H 0.05 1.66 6.72 -2.38 -0.02 1.65 16 44 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -84.28 358.53 0.96 -83.32 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 0.21 Total: 6.13 kcal Atomic # 6 Polarization: 36.07 SS G_CDS: 7.85 Total: 43.92 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -8.96 Total: -129.99 kcal Atomic # 8 Polarization: -50.19 SS G_CDS: -0.17 Total: -50.35 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -84.28 0.96 -83.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985782556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.761 kcal (2) G-P(sol) polarization free energy of solvation -84.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds