Wall clock time and date at job start Fri Apr 10 2020 18:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34769 * 124.18131 * 2 1 4 4 O 1.21233 * 127.15827 * 0.06193 * 3 2 1 5 5 C 1.51585 * 105.68162 * 179.82026 * 3 2 1 6 6 N 1.47311 * 103.59592 * 0.33007 * 5 3 2 7 7 C 1.46504 * 126.68648 * 179.97438 * 6 5 3 8 8 C 1.50701 * 109.47018 * 269.70894 * 7 6 5 9 9 O 1.21284 * 119.99890 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99951 * 180.02562 * 8 7 6 11 11 C 1.46931 * 120.63145 * 359.97321 * 10 8 7 12 12 C 1.53191 * 108.76527 * 126.40558 * 11 10 8 13 13 C 1.53046 * 109.30997 * 54.65907 * 12 11 10 14 14 C 1.53039 * 109.52798 * 298.61471 * 13 12 11 15 15 H 1.09000 * 109.49863 * 301.42271 * 14 13 12 16 16 N 1.46495 * 109.49863 * 181.35646 * 14 13 12 17 17 C 1.36943 * 119.99932 * 154.99770 * 16 14 13 18 18 H 1.08002 * 119.99772 * 0.02562 * 17 16 14 19 19 C 1.38811 * 119.99697 * 179.97438 * 17 16 14 20 20 N 1.31621 * 120.00283 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99762 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47130 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46968 * 120.00441 * 21 19 17 24 24 H 1.48501 * 109.47396 * 240.00582 * 21 19 17 25 25 C 1.46919 * 120.63242 * 180.02562 * 10 8 7 26 26 C 1.33793 * 124.17583 * 180.02562 * 2 1 3 27 27 O 1.21536 * 123.77106 * 359.96632 * 26 2 1 28 28 H 1.09001 * 109.46921 * 269.96753 * 1 2 3 29 29 H 1.09010 * 109.46816 * 29.95983 * 1 2 3 30 30 H 1.08990 * 109.47258 * 149.96142 * 1 2 3 31 31 H 1.09001 * 110.68783 * 241.75889 * 5 3 2 32 32 H 1.09003 * 110.50784 * 118.81766 * 5 3 2 33 33 H 1.09000 * 109.46648 * 149.71197 * 7 6 5 34 34 H 1.08997 * 109.47095 * 29.71481 * 7 6 5 35 35 H 1.08998 * 109.58959 * 246.20295 * 11 10 8 36 36 H 1.09003 * 109.58181 * 6.48778 * 11 10 8 37 37 H 1.08998 * 109.50939 * 294.70294 * 12 11 10 38 38 H 1.09003 * 109.48831 * 174.59930 * 12 11 10 39 39 H 1.09002 * 109.46115 * 178.59924 * 13 12 11 40 40 H 1.09004 * 109.45806 * 58.62809 * 13 12 11 41 41 H 0.96996 * 120.00019 * 334.99847 * 16 14 13 42 42 H 0.96998 * 119.99569 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.59005 * 113.79701 * 25 10 8 44 44 H 1.09002 * 109.70256 * 353.43937 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1149 0.0000 4 8 1.8342 2.2635 0.0010 5 6 3.6597 0.6339 0.0046 6 7 3.5338 -0.8338 -0.0014 7 6 4.6295 -1.8063 -0.0007 8 6 5.0060 -2.1398 -1.4213 9 8 4.4174 -1.6163 -2.3435 10 7 5.9968 -3.0197 -1.6669 11 6 6.7195 -3.6616 -0.5602 12 6 6.6714 -5.1803 -0.7554 13 6 7.2111 -5.5293 -2.1444 14 6 6.3316 -4.8772 -3.2136 15 1 5.3049 -5.2259 -3.1026 16 7 6.8296 -5.2382 -4.5432 17 6 5.9805 -5.2308 -5.6176 18 1 4.9438 -4.9585 -5.4847 19 6 6.4524 -5.5724 -6.8775 20 7 7.7159 -5.9038 -7.0395 21 14 5.2941 -5.5631 -8.3429 22 1 3.9363 -5.1582 -7.8981 23 1 5.7892 -4.6002 -9.3592 24 1 5.2358 -6.9230 -8.9366 25 6 6.3757 -3.3546 -3.0463 26 6 2.2166 -1.1069 -0.0005 27 8 1.7602 -2.2333 -0.0004 28 1 -0.3633 -0.0006 1.0277 29 1 -0.3633 0.8904 -0.5133 30 1 -0.3633 -0.8895 -0.5144 31 1 4.1756 0.9709 0.9037 32 1 4.1803 0.9779 -0.8892 33 1 4.3101 -2.7130 0.5130 34 1 5.4916 -1.3818 0.5137 35 1 7.7565 -3.3259 -0.5575 36 1 6.2474 -3.3976 0.3862 37 1 5.6415 -5.5261 -0.6678 38 1 7.2843 -5.6642 0.0051 39 1 7.2012 -6.6113 -2.2764 40 1 8.2326 -5.1611 -2.2401 41 1 7.7606 -5.4824 -4.6626 42 1 8.0455 -6.1429 -7.9199 43 1 7.3847 -2.9940 -3.2460 44 1 5.6773 -2.8900 -3.7424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000688439.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:50 Heat of formation + Delta-G solvation = -75.623772 kcal Electronic energy + Delta-G solvation = -28079.460722 eV Core-core repulsion = 24032.527924 eV Total energy + Delta-G solvation = -4046.932797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.38283 -41.15790 -39.75404 -38.71505 -37.28516 -36.24089 -36.20656 -33.97303 -32.71811 -31.60395 -29.93239 -28.18242 -27.84730 -25.95028 -25.85888 -23.62329 -23.22716 -22.05924 -21.26428 -20.09553 -19.15801 -18.78756 -18.48286 -17.89398 -17.78226 -16.97885 -16.82647 -16.71082 -16.15356 -15.81913 -15.61507 -15.40941 -15.31382 -15.21511 -15.05167 -14.93563 -14.47379 -14.04926 -13.94565 -13.71055 -13.63587 -13.56872 -13.13088 -13.07907 -12.94076 -12.50568 -12.20834 -12.10266 -12.02572 -11.87261 -11.67748 -11.41299 -11.33782 -11.24093 -11.09816 -10.93974 -10.02622 -9.72588 -9.02394 -8.02237 -5.30865 0.52475 0.94063 1.40823 1.41934 1.51940 1.57086 1.76871 1.89992 2.19035 2.50568 2.99844 3.31047 3.48419 3.65430 3.78547 4.02246 4.10223 4.15135 4.19407 4.26650 4.30526 4.34314 4.37509 4.38651 4.41608 4.46433 4.64768 4.67550 4.76617 4.82057 4.90158 4.94431 5.05994 5.18538 5.22448 5.39092 5.43851 5.50554 5.59084 5.96966 6.21504 6.25830 6.47531 6.90524 7.16675 7.27978 8.00876 8.25973 9.20513 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014358 B = 0.003128 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.614488 B = 8950.623312 C =10095.694706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.584 5.584 3 C 0.525 3.475 4 O -0.499 6.499 5 C 0.071 3.929 6 N -0.607 5.607 7 C 0.141 3.859 8 C 0.479 3.521 9 O -0.592 6.592 10 N -0.602 5.602 11 C 0.099 3.901 12 C -0.125 4.125 13 C -0.119 4.119 14 C 0.165 3.835 15 H 0.023 0.977 16 N -0.730 5.730 17 C -0.245 4.245 18 H 0.060 0.940 19 C -0.065 4.065 20 N -0.962 5.962 21 Si 0.965 3.035 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.286 1.286 25 C 0.110 3.890 26 C 0.697 3.303 27 O -0.579 6.579 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.177 0.823 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.180 0.820 35 H 0.095 0.905 36 H 0.128 0.872 37 H 0.058 0.942 38 H 0.114 0.886 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.378 0.622 42 H 0.254 0.746 43 H 0.063 0.937 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.335 11.535 25.663 28.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.330 5.330 3 C 0.314 3.686 4 O -0.371 6.371 5 C -0.053 4.053 6 N -0.343 5.343 7 C 0.016 3.984 8 C 0.267 3.733 9 O -0.472 6.472 10 N -0.335 5.335 11 C -0.021 4.021 12 C -0.163 4.163 13 C -0.157 4.157 14 C 0.055 3.945 15 H 0.041 0.959 16 N -0.370 5.370 17 C -0.377 4.377 18 H 0.078 0.922 19 C -0.258 4.258 20 N -0.612 5.612 21 Si 0.795 3.205 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.213 1.213 25 C -0.017 4.017 26 C 0.399 3.601 27 O -0.456 6.456 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.194 0.806 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.197 0.803 35 H 0.113 0.887 36 H 0.146 0.854 37 H 0.077 0.923 38 H 0.132 0.868 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.211 0.789 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.239 11.750 25.091 28.028 hybrid contribution -0.519 -0.364 -2.027 2.124 sum -4.758 11.386 23.064 26.157 Atomic orbital electron populations 1.21992 0.74176 1.04797 1.04853 1.46390 1.10502 1.07996 1.68063 1.21257 0.89935 0.84076 0.73284 1.90806 1.79871 1.18660 1.47788 1.22795 0.94294 0.78965 1.09276 1.47173 1.04085 1.07624 1.75446 1.21576 0.90424 0.94469 0.91885 1.22095 0.78961 0.78802 0.93437 1.90715 1.53921 1.54333 1.48262 1.48354 1.35141 1.42378 1.07667 1.22238 0.98649 0.92247 0.88987 1.21905 1.02183 0.96236 0.96018 1.21748 0.99197 1.00154 0.94596 1.20688 0.96318 0.92006 0.85454 0.95904 1.42508 1.10183 1.80981 1.03333 1.19505 0.92418 1.37573 0.88197 0.92174 1.25437 0.97724 1.02698 0.99972 1.69784 1.14631 1.53918 1.22842 0.85202 0.78319 0.77146 0.79878 1.20228 1.21608 1.21288 1.22125 0.99166 0.97829 0.82533 1.16037 0.82769 0.83961 0.77304 1.90960 1.76016 1.21933 1.56678 0.88946 0.88647 0.90053 0.80626 0.85336 0.84665 0.80296 0.88659 0.85444 0.92313 0.86788 0.92569 0.91101 0.78921 0.93744 0.91918 0.94067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 10.73 127.77 1.37 2.74 16 2 N -0.58 -12.29 3.00 -796.66 -2.39 -14.68 16 3 C 0.52 9.86 8.32 87.94 0.73 10.59 16 4 O -0.50 -11.71 17.76 -2.88 -0.05 -11.76 16 5 C 0.07 0.85 7.66 85.76 0.66 1.50 16 6 N -0.61 -10.80 2.51 -846.23 -2.12 -12.92 16 7 C 0.14 1.92 4.97 85.63 0.43 2.34 16 8 C 0.48 12.77 7.77 87.66 0.68 13.45 16 9 O -0.59 -22.97 15.85 -3.04 -0.05 -23.02 16 10 N -0.60 -15.39 2.97 -818.83 -2.43 -17.82 16 11 C 0.10 1.35 6.34 86.36 0.55 1.90 16 12 C -0.12 -2.19 6.08 30.67 0.19 -2.00 16 13 C -0.12 -3.37 5.35 30.62 0.16 -3.21 16 14 C 0.16 6.57 2.92 45.08 0.13 6.71 16 15 H 0.02 1.02 8.08 -2.39 -0.02 1.01 16 16 N -0.73 -37.29 5.13 -322.51 -1.65 -38.94 16 17 C -0.25 -14.25 9.93 84.03 0.83 -13.41 16 18 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 19 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 20 N -0.96 -58.98 13.06 21.65 0.28 -58.69 16 21 Si 0.97 48.09 29.55 68.60 2.03 50.12 16 22 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 24 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 25 C 0.11 4.06 6.02 86.38 0.52 4.58 16 26 C 0.70 17.28 8.31 179.44 1.49 18.77 16 27 O -0.58 -18.85 17.15 -3.83 -0.07 -18.91 16 28 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 29 H 0.09 1.41 8.00 -2.38 -0.02 1.39 16 30 H 0.08 1.50 7.86 -2.39 -0.02 1.48 16 31 H 0.18 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.13 1.61 8.14 -2.39 -0.02 1.60 16 33 H 0.14 1.55 7.58 -2.39 -0.02 1.53 16 34 H 0.18 0.27 7.94 -2.39 -0.02 0.25 16 35 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.13 0.55 5.93 -2.39 -0.01 0.53 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.38 20.13 7.80 -92.71 -0.72 19.41 16 42 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 43 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.04 1.91 7.01 -2.39 -0.02 1.90 16 Total: -1.00 -90.27 367.82 2.06 -88.21 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.30 Total: 17.84 kcal Atomic # 6 Polarization: 32.37 SS G_CDS: 8.21 Total: 40.58 kcal Atomic # 7 Polarization: -134.74 SS G_CDS: -8.32 Total: -143.06 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -0.17 Total: -53.69 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -90.27 2.06 -88.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000688439.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.587 kcal (2) G-P(sol) polarization free energy of solvation -90.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds