Wall clock time and date at job start Fri Apr 10 2020 18:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34774 * 120.00023 * 2 1 4 4 O 1.21285 * 119.99927 * 179.97438 * 3 2 1 5 5 C 1.50695 * 120.00109 * 0.02562 * 3 2 1 6 6 N 1.46504 * 109.47085 * 179.97438 * 5 3 2 7 7 C 1.34768 * 124.17744 * 269.94617 * 6 5 3 8 8 O 1.21236 * 127.15541 * 0.02562 * 7 6 5 9 9 C 1.51576 * 105.68439 * 180.02562 * 7 6 5 10 10 N 1.47310 * 103.59671 * 359.97438 * 9 7 6 11 11 C 1.46497 * 126.69296 * 179.97438 * 10 9 7 12 12 C 1.33794 * 124.17482 * 89.99747 * 6 5 3 13 13 O 1.21533 * 123.77244 * 0.21973 * 12 6 5 14 14 C 1.46501 * 119.99605 * 179.97438 * 2 1 3 15 15 H 1.08999 * 110.88525 * 176.12236 * 14 2 1 16 16 C 1.55150 * 111.00859 * 300.00270 * 14 2 1 17 17 C 1.54324 * 102.94369 * 153.57573 * 16 14 2 18 18 N 1.47017 * 107.27158 * 337.80649 * 17 16 14 19 19 C 1.36933 * 125.64902 * 178.95588 * 18 17 16 20 20 H 1.08002 * 120.00347 * 179.97438 * 19 18 17 21 21 C 1.38813 * 120.00232 * 359.97438 * 19 18 17 22 22 N 1.31620 * 119.99692 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00458 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47428 * 89.99782 * 23 21 19 25 25 H 1.48494 * 109.47417 * 210.00021 * 23 21 19 26 26 H 1.48500 * 109.46975 * 329.99866 * 23 21 19 27 27 C 1.47427 * 108.70532 * 358.94148 * 18 17 16 28 28 H 1.09003 * 109.46856 * 89.99790 * 1 2 3 29 29 H 1.08991 * 109.47330 * 209.99869 * 1 2 3 30 30 H 1.08997 * 109.47113 * 330.00677 * 1 2 3 31 31 H 1.08999 * 109.47177 * 59.99888 * 5 3 2 32 32 H 1.09002 * 109.46734 * 299.99433 * 5 3 2 33 33 H 1.09006 * 110.60089 * 241.47463 * 9 7 6 34 34 H 1.09002 * 110.60395 * 118.52768 * 9 7 6 35 35 H 1.09004 * 109.47121 * 180.02562 * 11 10 9 36 36 H 1.08993 * 109.47408 * 299.99750 * 11 10 9 37 37 H 1.08998 * 109.47533 * 60.00382 * 11 10 9 38 38 H 1.09003 * 110.72146 * 271.94191 * 16 14 2 39 39 H 1.09006 * 110.71778 * 35.03620 * 16 14 2 40 40 H 1.08997 * 109.88097 * 97.22668 * 17 16 14 41 41 H 1.09001 * 109.88295 * 218.23872 * 17 16 14 42 42 H 0.97005 * 120.00197 * 180.02562 * 22 21 19 43 43 H 1.08995 * 110.36925 * 265.28790 * 27 18 17 44 44 H 1.08998 * 110.36611 * 142.95902 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1672 0.0005 5 6 1.3855 2.4722 0.0006 6 7 2.3375 3.5858 0.0011 7 6 2.8287 4.1614 1.1163 8 8 2.5761 3.8663 2.2647 9 6 3.7627 5.2543 0.6360 10 7 3.6823 5.1583 -0.8318 11 6 4.3943 5.9915 -1.8038 12 6 2.8260 4.1575 -1.1056 13 8 2.5265 3.8136 -2.2321 14 6 2.1975 -1.2688 0.0006 15 1 3.2717 -1.0974 -0.0684 16 6 1.8483 -2.1120 1.2552 17 6 2.1062 -3.5583 0.7825 18 7 2.0263 -3.5584 -0.6855 19 6 2.2164 -4.6464 -1.4950 20 1 2.1352 -4.5427 -2.5670 21 6 2.5133 -5.8827 -0.9379 22 7 2.6126 -6.0090 0.3685 23 14 2.7718 -7.3670 -2.0420 24 1 4.2069 -7.4662 -2.4102 25 1 2.3595 -8.5980 -1.3211 26 1 1.9543 -7.2169 -3.2726 27 6 1.7074 -2.1933 -1.1418 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 0.7591 2.5298 0.8908 32 1 0.7586 2.5302 -0.8892 33 1 4.7808 5.0660 0.9770 34 1 3.4177 6.2307 0.9762 35 1 4.1284 5.6794 -2.8138 36 1 4.1150 7.0354 -1.6613 37 1 5.4690 5.8800 -1.6599 38 1 2.5042 -1.8554 2.0871 39 1 0.8033 -1.9749 1.5334 40 1 3.0979 -3.8807 1.0998 41 1 1.3496 -4.2244 1.1972 42 1 2.8205 -6.8728 0.7579 43 1 0.6326 -2.0825 -1.2848 44 1 2.2392 -1.9684 -2.0663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033642192.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:28 Heat of formation + Delta-G solvation = -49.167614 kcal Electronic energy + Delta-G solvation = -28200.981403 eV Core-core repulsion = 24155.195830 eV Total energy + Delta-G solvation = -4045.785572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.44135 -41.15200 -39.74725 -39.05662 -37.30417 -36.39703 -36.20071 -34.14402 -31.63064 -30.91846 -29.46221 -28.41842 -27.80996 -27.19932 -26.24365 -23.54428 -22.71295 -22.08397 -21.25042 -20.21420 -19.02905 -18.97708 -18.51472 -17.93826 -17.80846 -17.12837 -16.76924 -16.64932 -16.39592 -15.97156 -15.84498 -15.48500 -15.28718 -15.04163 -14.73929 -14.40480 -14.29193 -14.14747 -14.03984 -13.66272 -13.43927 -13.38892 -13.21681 -13.11706 -12.94617 -12.76054 -12.36546 -12.16224 -12.08973 -12.04783 -11.84841 -11.70751 -11.53338 -11.39118 -10.75545 -10.70989 -9.97932 -9.75806 -8.95252 -7.88613 -5.25799 0.57442 0.89930 1.38221 1.44507 1.47004 1.55506 1.66790 2.00330 2.07363 2.48175 3.00569 3.29756 3.33038 3.61467 3.64625 3.85783 3.91600 4.00934 4.12567 4.13932 4.23668 4.24399 4.29288 4.36882 4.51866 4.58695 4.65814 4.69686 4.77753 4.89149 4.89763 4.94774 4.99810 5.08399 5.38635 5.39099 5.46076 5.57741 5.68810 5.99561 6.14166 6.23256 6.30663 6.90738 6.97643 7.05296 7.70715 8.34631 9.21656 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.024051 B = 0.002703 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.889386 B =10354.910170 C =10788.819714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.594 5.594 3 C 0.493 3.507 4 O -0.584 6.584 5 C 0.106 3.894 6 N -0.570 5.570 7 C 0.520 3.480 8 O -0.498 6.498 9 C 0.076 3.924 10 N -0.623 5.623 11 C 0.112 3.888 12 C 0.694 3.306 13 O -0.583 6.583 14 C 0.139 3.861 15 H 0.073 0.927 16 C -0.133 4.133 17 C 0.189 3.811 18 N -0.625 5.625 19 C -0.246 4.246 20 H 0.082 0.918 21 C -0.065 4.065 22 N -0.951 5.951 23 Si 0.982 3.018 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.267 1.267 27 C 0.134 3.866 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.156 0.844 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.168 0.832 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.008 0.992 41 H 0.019 0.981 42 H 0.248 0.752 43 H 0.048 0.952 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.476 29.373 1.248 29.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.326 5.326 3 C 0.281 3.719 4 O -0.464 6.464 5 C -0.019 4.019 6 N -0.314 5.314 7 C 0.309 3.691 8 O -0.369 6.369 9 C -0.049 4.049 10 N -0.361 5.361 11 C -0.027 4.027 12 C 0.396 3.604 13 O -0.459 6.459 14 C 0.033 3.967 15 H 0.091 0.909 16 C -0.172 4.172 17 C 0.064 3.936 18 N -0.352 5.352 19 C -0.375 4.375 20 H 0.100 0.900 21 C -0.258 4.258 22 N -0.599 5.599 23 Si 0.810 3.190 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.192 1.192 27 C 0.008 3.992 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.128 0.872 31 H 0.173 0.827 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.185 0.815 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.026 0.974 41 H 0.038 0.962 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.084 28.886 1.184 29.074 hybrid contribution 0.445 -1.683 -0.448 1.797 sum -2.639 27.203 0.736 27.341 Atomic orbital electron populations 1.22244 0.76413 1.05422 1.03950 1.47777 1.08814 1.04213 1.71748 1.21460 0.88105 0.86702 0.75596 1.90686 1.16054 1.87796 1.51819 1.21672 0.90358 0.80576 1.09287 1.46065 1.43781 1.32577 1.09010 1.21566 0.80261 0.83249 0.83984 1.90817 1.60723 1.66582 1.18809 1.22735 1.02281 1.00396 0.79460 1.47675 1.45507 1.34827 1.08097 1.21828 0.96508 0.94111 0.90237 1.16063 0.80093 0.80639 0.83607 1.90951 1.65041 1.68134 1.21815 1.21937 0.96185 0.82414 0.96138 0.90877 1.23045 1.02562 0.94848 0.96701 1.20865 0.97904 0.91743 0.83121 1.44662 1.83227 1.04497 1.02799 1.19445 1.40943 0.87027 0.90049 0.89998 1.25693 1.02050 1.00554 0.97468 1.70178 1.55797 1.23686 1.10283 0.85031 0.77709 0.78417 0.77880 1.21499 1.21708 1.19153 1.21837 0.98193 0.84229 0.94962 0.90612 0.90041 0.87247 0.82667 0.83626 0.83763 0.81469 0.90918 0.87985 0.89563 0.91211 0.89002 0.97369 0.96238 0.94227 0.93465 0.95163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.14 8.85 127.77 1.13 2.27 16 2 N -0.59 -17.42 2.91 -814.83 -2.37 -19.79 16 3 C 0.49 15.24 7.74 87.66 0.68 15.92 16 4 O -0.58 -23.69 15.81 -3.05 -0.05 -23.74 16 5 C 0.11 2.20 4.73 85.63 0.41 2.60 16 6 N -0.57 -12.81 2.09 -777.21 -1.63 -14.43 16 7 C 0.52 10.20 8.32 87.94 0.73 10.93 16 8 O -0.50 -12.52 17.76 -2.89 -0.05 -12.57 16 9 C 0.08 0.72 7.66 85.76 0.66 1.38 16 10 N -0.62 -9.15 3.42 -866.98 -2.96 -12.11 16 11 C 0.11 0.90 11.33 127.77 1.45 2.35 16 12 C 0.69 16.63 8.31 179.44 1.49 18.12 16 13 O -0.58 -18.40 16.92 -3.82 -0.06 -18.46 16 14 C 0.14 5.33 3.45 46.38 0.16 5.49 16 15 H 0.07 3.31 7.02 -2.39 -0.02 3.30 16 16 C -0.13 -5.09 6.51 31.78 0.21 -4.89 16 17 C 0.19 9.65 5.37 86.73 0.47 10.11 16 18 N -0.62 -33.34 3.39 -691.99 -2.35 -35.69 16 19 C -0.25 -14.22 10.28 84.03 0.86 -13.36 16 20 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 21 C -0.06 -3.76 5.49 84.86 0.47 -3.30 16 22 N -0.95 -58.33 10.31 21.65 0.22 -58.11 16 23 Si 0.98 46.73 29.55 68.60 2.03 48.76 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 25 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 C 0.13 5.75 6.79 86.86 0.59 6.34 16 28 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 29 H 0.08 1.61 6.41 -2.39 -0.02 1.60 16 30 H 0.11 1.15 6.44 -2.39 -0.02 1.14 16 31 H 0.16 2.21 7.26 -2.39 -0.02 2.19 16 32 H 0.15 2.46 7.82 -2.39 -0.02 2.44 16 33 H 0.14 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.17 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.07 0.89 7.67 -2.39 -0.02 0.87 16 36 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.09 2.99 6.40 -2.38 -0.02 2.97 16 40 H 0.01 0.47 7.38 -2.39 -0.02 0.45 16 41 H 0.02 1.08 7.51 -2.39 -0.02 1.06 16 42 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 43 H 0.05 1.83 7.00 -2.39 -0.02 1.81 16 44 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -89.36 362.32 3.09 -86.26 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 1.02 Total: 5.90 kcal Atomic # 6 Polarization: 44.69 SS G_CDS: 9.29 Total: 53.98 kcal Atomic # 7 Polarization: -131.05 SS G_CDS: -9.09 Total: -140.13 kcal Atomic # 8 Polarization: -54.61 SS G_CDS: -0.16 Total: -54.78 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -89.36 3.09 -86.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033642192.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.096 kcal (2) G-P(sol) polarization free energy of solvation -89.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds