Wall clock time and date at job start Fri Apr 10 2020 18:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47015 * 2 1 4 4 C 1.34773 * 120.00215 * 275.44084 * 3 2 1 5 5 O 1.21281 * 120.00021 * 184.58836 * 4 3 2 6 6 C 1.50704 * 120.00024 * 4.58701 * 4 3 2 7 7 H 1.09002 * 109.46018 * 33.30198 * 6 4 3 8 8 C 1.53043 * 109.46413 * 273.32948 * 6 4 3 9 9 C 1.50808 * 109.17886 * 286.67805 * 8 6 4 10 10 O 1.21233 * 120.01679 * 145.79232 * 9 8 6 11 11 N 1.34559 * 119.96707 * 325.76502 * 9 8 6 12 12 C 1.34340 * 120.98722 * 4.44079 * 11 9 8 13 13 O 1.21538 * 119.20479 * 192.03791 * 12 11 9 14 14 N 1.34286 * 121.58343 * 12.01708 * 12 11 9 15 15 C 1.46502 * 119.99903 * 95.16506 * 3 2 1 16 16 H 1.08994 * 110.88821 * 182.02702 * 15 3 2 17 17 C 1.55158 * 111.00186 * 305.90830 * 15 3 2 18 18 C 1.54322 * 102.94135 * 153.57849 * 17 15 3 19 19 N 1.47024 * 107.27091 * 337.80312 * 18 17 15 20 20 C 1.36933 * 125.64635 * 178.89210 * 19 18 17 21 21 H 1.08003 * 119.99777 * 180.02562 * 20 19 18 22 22 C 1.38816 * 120.00684 * 0.03419 * 20 19 18 23 23 N 1.31624 * 119.99482 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00345 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47240 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47216 * 119.99766 * 24 22 20 27 27 H 1.48497 * 109.46910 * 239.99642 * 24 22 20 28 28 C 1.47417 * 108.70228 * 358.94486 * 19 18 17 29 29 H 1.09003 * 109.47310 * 174.43988 * 1 2 3 30 30 H 1.08993 * 109.48043 * 294.44217 * 1 2 3 31 31 H 1.09005 * 109.46970 * 54.44756 * 1 2 3 32 32 H 1.08998 * 109.47667 * 239.99935 * 2 1 3 33 33 H 1.08996 * 109.46808 * 119.99903 * 2 1 3 34 34 H 1.09003 * 109.51999 * 46.58669 * 8 6 4 35 35 H 1.08995 * 109.52022 * 166.76540 * 8 6 4 36 36 H 0.97005 * 119.50372 * 184.41600 * 11 9 8 37 37 H 0.96998 * 119.53603 * 185.71801 * 14 12 11 38 38 H 1.09005 * 110.71896 * 271.93849 * 17 15 3 39 39 H 1.09001 * 110.72578 * 35.21458 * 17 15 3 40 40 H 1.09001 * 109.88674 * 97.22338 * 18 17 15 41 41 H 1.08999 * 109.88256 * 218.38910 * 18 17 15 42 42 H 0.96997 * 120.00011 * 180.02562 * 23 22 20 43 43 H 1.09000 * 110.36595 * 265.28747 * 28 19 18 44 44 H 1.09002 * 110.37050 * 142.96282 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1386 2.0535 -1.1619 5 8 2.6206 3.1664 -1.1715 6 6 1.6742 1.4223 -2.4492 7 1 0.8080 0.7906 -2.2521 8 6 2.8028 0.5715 -3.0362 9 6 3.8630 1.4800 -3.6061 10 8 5.0306 1.1581 -3.5520 11 7 3.5124 2.6478 -4.1753 12 6 2.2355 3.0649 -4.1680 13 8 1.9136 4.0018 -4.8722 14 7 1.3060 2.4714 -3.4018 15 6 2.3701 2.0338 1.2636 16 1 2.6802 3.0650 1.0953 17 6 1.1928 1.9645 2.2719 18 6 1.9045 2.0338 3.6395 19 7 3.2930 1.5972 3.4315 20 6 4.2631 1.5356 4.3960 21 1 5.2575 1.2002 4.1411 22 6 3.9684 1.9041 5.7016 23 7 2.7565 2.3132 6.0122 24 14 5.2916 1.8193 7.0174 25 1 6.5578 1.3304 6.4152 26 1 5.5059 3.1719 7.5918 27 1 4.8627 0.8877 8.0913 28 6 3.4682 1.2381 2.0126 29 1 -0.3634 -1.0228 -0.0996 30 1 -0.3635 0.4252 0.9354 31 1 -0.3633 0.5976 -0.8361 32 1 1.8934 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.2374 -0.0482 -2.2519 35 1 2.4055 -0.0653 -3.8266 36 1 4.1920 3.1969 -4.5969 37 1 0.3777 2.7411 -3.4809 38 1 0.5234 2.8149 2.1421 39 1 0.6498 1.0253 2.1669 40 1 1.8898 3.0574 4.0137 41 1 1.4097 1.3704 4.3488 42 1 2.5507 2.5711 6.9244 43 1 3.3233 0.1670 1.8717 44 1 4.4570 1.5371 1.6648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033979918.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:33 Heat of formation + Delta-G solvation = -53.536492 kcal Electronic energy + Delta-G solvation = -28996.826811 eV Core-core repulsion = 24950.851790 eV Total energy + Delta-G solvation = -4045.975021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.15232 -40.10461 -39.07367 -37.68088 -36.06647 -35.52572 -34.50571 -32.42285 -31.27684 -30.65034 -29.27889 -27.59372 -25.98658 -24.56836 -23.74873 -23.52578 -21.52709 -20.26741 -20.16303 -19.12400 -18.49017 -17.89528 -17.66558 -17.02824 -16.61978 -16.46768 -15.89779 -15.39799 -14.98496 -14.72659 -14.59034 -14.48874 -14.11046 -14.05659 -13.77439 -13.22133 -13.14202 -12.89743 -12.62067 -12.47984 -12.27801 -12.04652 -11.71295 -11.32110 -11.04039 -10.97205 -10.96644 -10.83748 -10.62914 -10.54880 -10.44655 -10.27894 -10.09685 -9.87506 -9.77359 -9.40243 -8.70159 -8.57717 -6.90592 -5.76853 -3.11211 1.42999 2.06876 2.40282 2.58144 2.94029 2.99371 3.37620 3.43805 3.45894 3.84364 3.92023 4.08997 4.45110 4.46485 4.59872 4.69952 4.85388 4.94598 5.13888 5.31650 5.35813 5.45244 5.50274 5.54837 5.59006 5.67279 5.70416 5.91458 5.96602 6.11455 6.22810 6.37100 6.39317 6.47667 6.59162 6.79423 6.94888 7.20117 7.32976 7.49009 7.52720 7.76257 7.88194 7.98481 8.18871 9.15789 9.75564 10.39453 11.34720 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.019861 B = 0.003246 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.461429 B = 8623.598444 C = 9076.154574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.091 3.909 3 N -0.589 5.589 4 C 0.491 3.509 5 O -0.521 6.521 6 C 0.116 3.884 7 H 0.135 0.865 8 C -0.151 4.151 9 C 0.527 3.473 10 O -0.494 6.494 11 N -0.669 5.669 12 C 0.727 3.273 13 O -0.557 6.557 14 N -0.707 5.707 15 C 0.123 3.877 16 H 0.106 0.894 17 C -0.155 4.155 18 C 0.179 3.821 19 N -0.602 5.602 20 C -0.230 4.230 21 H 0.079 0.921 22 C -0.006 4.006 23 N -0.921 5.921 24 Si 0.913 3.087 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.131 3.869 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.428 0.572 37 H 0.427 0.573 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.046 0.954 42 H 0.252 0.748 43 H 0.022 0.978 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.109 -7.781 -18.997 22.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.032 4.032 3 N -0.321 5.321 4 C 0.275 3.725 5 O -0.396 6.396 6 C 0.007 3.993 7 H 0.153 0.847 8 C -0.192 4.192 9 C 0.314 3.686 10 O -0.365 6.365 11 N -0.338 5.338 12 C 0.427 3.573 13 O -0.431 6.431 14 N -0.366 5.366 15 C 0.019 3.981 16 H 0.124 0.876 17 C -0.194 4.194 18 C 0.054 3.946 19 N -0.329 5.329 20 C -0.358 4.358 21 H 0.097 0.903 22 C -0.203 4.203 23 N -0.569 5.569 24 Si 0.743 3.257 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.217 1.217 28 C 0.004 3.996 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.269 0.731 37 H 0.267 0.733 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.040 0.960 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.312 -6.975 -19.006 21.526 hybrid contribution 0.445 0.238 0.783 0.931 sum -6.867 -6.738 -18.224 20.607 Atomic orbital electron populations 1.22461 0.95544 1.02462 1.03300 1.21749 0.94701 0.82628 1.04110 1.47971 1.63944 1.13811 1.06372 1.20849 0.79785 0.86585 0.85318 1.90770 1.43280 1.19446 1.86138 1.21285 1.00361 0.89539 0.88146 0.84719 1.22278 0.94351 0.98219 1.04352 1.20685 0.90290 0.81482 0.76170 1.90819 1.19239 1.72944 1.53527 1.44113 1.10428 1.22879 1.56407 1.15497 0.80438 0.81434 0.79947 1.91038 1.78981 1.28652 1.44430 1.44745 1.11066 1.41055 1.39706 1.22520 0.96586 0.98208 0.80774 0.87616 1.23372 0.97143 1.01092 0.97782 1.21158 0.83555 1.00050 0.89858 1.44380 1.08374 1.77536 1.02600 1.19106 0.90895 1.38217 0.87555 0.90293 1.24807 0.96946 1.01206 0.97309 1.69961 1.18382 1.50199 1.18344 0.86027 0.80627 0.77301 0.81708 1.20452 1.21685 1.21711 1.21756 0.95899 0.95774 0.86181 0.91154 0.90795 0.92719 0.90760 0.88388 0.85035 0.85310 0.73085 0.73286 0.91972 0.91409 0.93341 0.93582 0.93734 0.96013 0.94026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 9.64 37.16 0.36 -0.83 16 2 C 0.09 0.76 4.87 -4.04 -0.02 0.74 16 3 N -0.59 -7.23 2.53 -163.68 -0.41 -7.64 16 4 C 0.49 6.10 6.47 -10.99 -0.07 6.03 16 5 O -0.52 -8.98 15.57 5.56 0.09 -8.89 16 6 C 0.12 0.86 2.81 -69.11 -0.19 0.66 16 7 H 0.14 0.49 5.26 -51.93 -0.27 0.22 16 8 C -0.15 -1.00 5.33 -27.81 -0.15 -1.15 16 9 C 0.53 5.74 7.44 -11.03 -0.08 5.66 16 10 O -0.49 -7.04 17.93 5.60 0.10 -6.94 16 11 N -0.67 -7.30 5.18 -16.02 -0.08 -7.38 16 12 C 0.73 8.41 7.92 -87.75 -0.69 7.71 16 13 O -0.56 -8.19 17.97 5.33 0.10 -8.10 16 14 N -0.71 -5.98 4.97 -60.11 -0.30 -6.28 16 15 C 0.12 2.07 3.44 -65.78 -0.23 1.85 16 16 H 0.11 2.09 7.03 -51.93 -0.36 1.73 16 17 C -0.15 -2.64 6.25 -24.90 -0.16 -2.79 16 18 C 0.18 4.13 5.37 -3.06 -0.02 4.11 16 19 N -0.60 -14.88 3.39 -170.08 -0.58 -15.46 16 20 C -0.23 -6.30 10.28 -15.06 -0.15 -6.45 16 21 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 22 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 23 N -0.92 -26.51 10.31 55.49 0.57 -25.94 16 24 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 C 0.13 2.60 6.79 -2.53 -0.02 2.58 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.65 5.79 -51.93 -0.30 0.35 16 31 H 0.05 0.29 6.49 -51.93 -0.34 -0.05 16 32 H 0.07 0.37 5.59 -51.93 -0.29 0.08 16 33 H 0.10 0.97 6.32 -51.93 -0.33 0.64 16 34 H 0.13 0.80 6.84 -51.93 -0.35 0.44 16 35 H 0.13 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.43 4.35 8.86 -40.82 -0.36 3.98 16 37 H 0.43 2.77 8.90 -40.82 -0.36 2.40 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.00 4.99 -51.93 -0.26 0.74 16 40 H 0.05 1.27 7.38 -51.93 -0.38 0.89 16 41 H 0.05 1.17 7.51 -51.93 -0.39 0.78 16 42 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.02 0.41 6.30 -51.93 -0.33 0.08 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 346.79 15.07 5.23 5.23 Total: -1.00 -37.01 346.79 -7.40 -44.42 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.57 Total: 2.27 kcal Atomic # 6 Polarization: 19.36 SS G_CDS: -1.52 Total: 17.85 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -0.80 Total: -62.70 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: 0.28 Total: -23.92 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -37.01 -7.40 -44.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033979918.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.121 kcal (2) G-P(sol) polarization free energy of solvation -37.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds