Wall clock time and date at job start Fri Apr 10 2020 18:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47015 * 2 1 4 4 C 1.34773 * 120.00215 * 275.44084 * 3 2 1 5 5 O 1.21281 * 120.00021 * 184.58836 * 4 3 2 6 6 C 1.50704 * 120.00024 * 4.58701 * 4 3 2 7 7 H 1.09002 * 109.46018 * 33.30198 * 6 4 3 8 8 C 1.53043 * 109.46413 * 273.32948 * 6 4 3 9 9 C 1.50808 * 109.17886 * 286.67805 * 8 6 4 10 10 O 1.21233 * 120.01679 * 145.79232 * 9 8 6 11 11 N 1.34559 * 119.96707 * 325.76502 * 9 8 6 12 12 C 1.34340 * 120.98722 * 4.44079 * 11 9 8 13 13 O 1.21538 * 119.20479 * 192.03791 * 12 11 9 14 14 N 1.34286 * 121.58343 * 12.01708 * 12 11 9 15 15 C 1.46502 * 119.99903 * 95.16506 * 3 2 1 16 16 H 1.08994 * 110.88821 * 182.02702 * 15 3 2 17 17 C 1.55158 * 111.00186 * 305.90830 * 15 3 2 18 18 C 1.54322 * 102.94135 * 153.57849 * 17 15 3 19 19 N 1.47024 * 107.27091 * 337.80312 * 18 17 15 20 20 C 1.36933 * 125.64635 * 178.89210 * 19 18 17 21 21 H 1.08003 * 119.99777 * 180.02562 * 20 19 18 22 22 C 1.38816 * 120.00684 * 0.03419 * 20 19 18 23 23 N 1.31624 * 119.99482 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00345 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47240 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47216 * 119.99766 * 24 22 20 27 27 H 1.48497 * 109.46910 * 239.99642 * 24 22 20 28 28 C 1.47417 * 108.70228 * 358.94486 * 19 18 17 29 29 H 1.09003 * 109.47310 * 174.43988 * 1 2 3 30 30 H 1.08993 * 109.48043 * 294.44217 * 1 2 3 31 31 H 1.09005 * 109.46970 * 54.44756 * 1 2 3 32 32 H 1.08998 * 109.47667 * 239.99935 * 2 1 3 33 33 H 1.08996 * 109.46808 * 119.99903 * 2 1 3 34 34 H 1.09003 * 109.51999 * 46.58669 * 8 6 4 35 35 H 1.08995 * 109.52022 * 166.76540 * 8 6 4 36 36 H 0.97005 * 119.50372 * 184.41600 * 11 9 8 37 37 H 0.96998 * 119.53603 * 185.71801 * 14 12 11 38 38 H 1.09005 * 110.71896 * 271.93849 * 17 15 3 39 39 H 1.09001 * 110.72578 * 35.21458 * 17 15 3 40 40 H 1.09001 * 109.88674 * 97.22338 * 18 17 15 41 41 H 1.08999 * 109.88256 * 218.38910 * 18 17 15 42 42 H 0.96997 * 120.00011 * 180.02562 * 23 22 20 43 43 H 1.09000 * 110.36595 * 265.28747 * 28 19 18 44 44 H 1.09002 * 110.37050 * 142.96282 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1386 2.0535 -1.1619 5 8 2.6206 3.1664 -1.1715 6 6 1.6742 1.4223 -2.4492 7 1 0.8080 0.7906 -2.2521 8 6 2.8028 0.5715 -3.0362 9 6 3.8630 1.4800 -3.6061 10 8 5.0306 1.1581 -3.5520 11 7 3.5124 2.6478 -4.1753 12 6 2.2355 3.0649 -4.1680 13 8 1.9136 4.0018 -4.8722 14 7 1.3060 2.4714 -3.4018 15 6 2.3701 2.0338 1.2636 16 1 2.6802 3.0650 1.0953 17 6 1.1928 1.9645 2.2719 18 6 1.9045 2.0338 3.6395 19 7 3.2930 1.5972 3.4315 20 6 4.2631 1.5356 4.3960 21 1 5.2575 1.2002 4.1411 22 6 3.9684 1.9041 5.7016 23 7 2.7565 2.3132 6.0122 24 14 5.2916 1.8193 7.0174 25 1 6.5578 1.3304 6.4152 26 1 5.5059 3.1719 7.5918 27 1 4.8627 0.8877 8.0913 28 6 3.4682 1.2381 2.0126 29 1 -0.3634 -1.0228 -0.0996 30 1 -0.3635 0.4252 0.9354 31 1 -0.3633 0.5976 -0.8361 32 1 1.8934 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.2374 -0.0482 -2.2519 35 1 2.4055 -0.0653 -3.8266 36 1 4.1920 3.1969 -4.5969 37 1 0.3777 2.7411 -3.4809 38 1 0.5234 2.8149 2.1421 39 1 0.6498 1.0253 2.1669 40 1 1.8898 3.0574 4.0137 41 1 1.4097 1.3704 4.3488 42 1 2.5507 2.5711 6.9244 43 1 3.3233 0.1670 1.8717 44 1 4.4570 1.5371 1.6648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033979918.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:32 Heat of formation + Delta-G solvation = -84.557302 kcal Electronic energy + Delta-G solvation = -28998.171975 eV Core-core repulsion = 24950.851790 eV Total energy + Delta-G solvation = -4047.320184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.98106 -41.16163 -39.98903 -39.10596 -36.97675 -36.77064 -35.38562 -34.20970 -32.09795 -31.54016 -30.97038 -29.03053 -27.10228 -26.22014 -24.60793 -24.28057 -22.68177 -21.99611 -21.14662 -20.18636 -19.30245 -18.99125 -18.79257 -18.49263 -17.59098 -17.34119 -16.91129 -16.66102 -16.30726 -15.99755 -15.73852 -15.55314 -15.46578 -14.81278 -14.67384 -14.53439 -14.31766 -14.06219 -13.78699 -13.59979 -13.41484 -13.30478 -12.93955 -12.81288 -12.60066 -12.33063 -12.14038 -12.02092 -11.95521 -11.82706 -11.77923 -11.48538 -11.43937 -11.38816 -11.34231 -10.73173 -10.30510 -9.72683 -8.91962 -7.87872 -5.24089 0.58995 1.24503 1.44542 1.46195 1.50999 1.56308 1.71697 2.10688 2.20069 2.48478 3.16995 3.23967 3.31113 3.40175 3.65554 3.89228 3.94427 3.96751 4.07988 4.14343 4.22173 4.42707 4.46224 4.54307 4.58806 4.67379 4.82403 4.86843 4.95070 4.97678 5.08371 5.17431 5.19706 5.42081 5.54395 5.57228 5.65804 5.72578 5.73427 6.13520 6.16773 6.37707 6.39515 7.00015 7.07468 7.08476 7.73353 8.36125 9.22090 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.019861 B = 0.003246 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.461429 B = 8623.598444 C = 9076.154574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.079 3.921 3 N -0.584 5.584 4 C 0.483 3.517 5 O -0.578 6.578 6 C 0.130 3.870 7 H 0.191 0.809 8 C -0.147 4.147 9 C 0.519 3.481 10 O -0.537 6.537 11 N -0.673 5.673 12 C 0.725 3.275 13 O -0.595 6.595 14 N -0.692 5.692 15 C 0.140 3.860 16 H 0.071 0.929 17 C -0.132 4.132 18 C 0.186 3.814 19 N -0.625 5.625 20 C -0.245 4.245 21 H 0.080 0.920 22 C -0.062 4.062 23 N -0.948 5.948 24 Si 0.977 3.023 25 H -0.268 1.268 26 H -0.294 1.294 27 H -0.287 1.287 28 C 0.131 3.869 29 H 0.098 0.902 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.146 0.854 35 H 0.182 0.818 36 H 0.425 0.575 37 H 0.438 0.562 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.005 0.995 41 H 0.018 0.982 42 H 0.248 0.752 43 H 0.049 0.951 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.657 -10.688 -20.822 25.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.042 4.042 3 N -0.315 5.315 4 C 0.270 3.730 5 O -0.456 6.456 6 C 0.022 3.978 7 H 0.208 0.792 8 C -0.186 4.186 9 C 0.309 3.691 10 O -0.411 6.411 11 N -0.341 5.341 12 C 0.425 3.575 13 O -0.472 6.472 14 N -0.351 5.351 15 C 0.035 3.965 16 H 0.089 0.911 17 C -0.171 4.171 18 C 0.061 3.939 19 N -0.352 5.352 20 C -0.374 4.374 21 H 0.098 0.902 22 C -0.255 4.255 23 N -0.597 5.597 24 Si 0.806 3.194 25 H -0.192 1.192 26 H -0.222 1.222 27 H -0.214 1.214 28 C 0.005 3.995 29 H 0.117 0.883 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.138 0.862 33 H 0.101 0.899 34 H 0.163 0.837 35 H 0.199 0.801 36 H 0.265 0.735 37 H 0.281 0.719 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.023 0.977 41 H 0.036 0.964 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -8.901 -9.945 -20.860 24.764 hybrid contribution 0.967 1.150 1.327 2.004 sum -7.934 -8.795 -19.533 22.844 Atomic orbital electron populations 1.22447 0.93649 1.04534 1.02897 1.22182 0.96273 0.79974 1.05725 1.47973 1.63676 1.15340 1.04518 1.21875 0.78505 0.85959 0.86692 1.90766 1.45627 1.22221 1.87025 1.21511 1.02533 0.89084 0.84720 0.79237 1.22522 0.92487 0.97488 1.06119 1.21592 0.90857 0.81446 0.75211 1.90805 1.21253 1.73750 1.55287 1.44222 1.10400 1.23232 1.56217 1.15673 0.80718 0.81110 0.79957 1.91013 1.79614 1.30348 1.46240 1.44703 1.11044 1.40793 1.38589 1.21873 0.95240 0.96447 0.82987 0.91115 1.23162 0.96790 1.03245 0.93866 1.20904 0.83599 0.96631 0.92783 1.44655 1.08568 1.77643 1.04327 1.19458 0.91663 1.37663 0.88569 0.90227 1.25619 0.99010 1.01494 0.99371 1.70174 1.20055 1.51219 1.18277 0.85029 0.78622 0.76820 0.78972 1.19194 1.22160 1.21404 1.21897 0.96189 0.97423 0.84014 0.88282 0.93238 0.90634 0.86183 0.89867 0.83660 0.80058 0.73453 0.71946 0.91031 0.88182 0.97716 0.96389 0.94308 0.93338 0.95725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 9.64 71.98 0.69 -0.63 16 2 C 0.08 0.92 4.87 86.38 0.42 1.34 16 3 N -0.58 -12.69 2.53 -790.15 -2.00 -14.68 16 4 C 0.48 10.73 6.47 87.66 0.57 11.30 16 5 O -0.58 -19.69 15.57 -3.03 -0.05 -19.74 16 6 C 0.13 1.28 2.81 44.28 0.12 1.40 16 7 H 0.19 -0.12 5.26 -2.39 -0.01 -0.13 16 8 C -0.15 -1.19 5.33 29.90 0.16 -1.03 16 9 C 0.52 10.30 7.44 87.73 0.65 10.96 16 10 O -0.54 -14.89 17.93 -2.89 -0.05 -14.94 16 11 N -0.67 -14.16 5.18 -441.65 -2.29 -16.45 16 12 C 0.72 15.75 7.92 179.34 1.42 17.17 16 13 O -0.59 -17.28 17.97 -3.84 -0.07 -17.35 16 14 N -0.69 -9.38 4.97 -462.65 -2.30 -11.68 16 15 C 0.14 4.69 3.44 46.38 0.16 4.85 16 16 H 0.07 2.90 7.03 -2.39 -0.02 2.88 16 17 C -0.13 -4.42 6.25 31.78 0.20 -4.23 16 18 C 0.19 8.93 5.37 86.73 0.47 9.40 16 19 N -0.63 -31.77 3.39 -692.00 -2.35 -34.12 16 20 C -0.24 -13.76 10.28 84.04 0.86 -12.90 16 21 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 22 C -0.06 -3.51 5.49 84.86 0.47 -3.04 16 23 N -0.95 -56.65 10.31 21.65 0.22 -56.43 16 24 Si 0.98 45.88 29.55 68.60 2.03 47.91 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 27 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 28 C 0.13 5.19 6.79 86.86 0.59 5.78 16 29 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.05 0.65 5.79 -2.39 -0.01 0.63 16 31 H 0.07 0.27 6.49 -2.38 -0.02 0.26 16 32 H 0.12 0.35 5.59 -2.39 -0.01 0.34 16 33 H 0.08 1.30 6.32 -2.39 -0.02 1.28 16 34 H 0.15 0.92 6.84 -2.39 -0.02 0.90 16 35 H 0.18 -0.27 8.14 -2.39 -0.02 -0.29 16 36 H 0.42 8.89 8.86 -92.70 -0.82 8.06 16 37 H 0.44 4.06 8.90 -92.71 -0.83 3.23 16 38 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 39 H 0.10 2.73 4.99 -2.39 -0.01 2.72 16 40 H 0.00 0.25 7.38 -2.39 -0.02 0.24 16 41 H 0.02 0.95 7.51 -2.39 -0.02 0.93 16 42 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 43 H 0.05 1.70 6.30 -2.39 -0.02 1.68 16 44 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -89.33 346.79 -0.63 -89.96 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -0.56 Total: 7.17 kcal Atomic # 6 Polarization: 33.57 SS G_CDS: 6.78 Total: 40.36 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -8.71 Total: -133.36 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -0.17 Total: -52.03 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -89.33 -0.63 -89.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033979918.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.400 kcal (2) G-P(sol) polarization free energy of solvation -89.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds