Wall clock time and date at job start Fri Apr 10 2020 18:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46491 * 109.47565 * 2 1 4 4 C 1.34777 * 119.99962 * 265.88883 * 3 2 1 5 5 O 1.21289 * 119.99914 * 179.97438 * 4 3 2 6 6 C 1.50698 * 120.00272 * 359.97438 * 4 3 2 7 7 H 1.08996 * 109.46045 * 39.99663 * 6 4 3 8 8 C 1.53042 * 109.46072 * 280.01766 * 6 4 3 9 9 C 1.50807 * 109.18907 * 286.68193 * 8 6 4 10 10 O 1.21234 * 120.01724 * 145.78570 * 9 8 6 11 11 N 1.34554 * 119.96423 * 325.76916 * 9 8 6 12 12 C 1.34350 * 120.98889 * 4.43051 * 11 9 8 13 13 O 1.21537 * 119.21007 * 192.04529 * 12 11 9 14 14 N 1.34271 * 121.57310 * 12.02610 * 12 11 9 15 15 C 1.46502 * 119.99879 * 85.88150 * 3 2 1 16 16 H 1.08999 * 110.64462 * 236.83037 * 15 3 2 17 17 C 1.55159 * 110.71934 * 113.69426 * 15 3 2 18 18 C 1.54904 * 101.58199 * 277.14356 * 17 15 3 19 19 N 1.47427 * 104.83018 * 322.98630 * 18 17 15 20 20 C 1.36939 * 125.65172 * 204.09456 * 19 18 17 21 21 H 1.07992 * 120.00247 * 180.02562 * 20 19 18 22 22 C 1.38814 * 119.99435 * 0.02657 * 20 19 18 23 23 N 1.31620 * 120.00555 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99624 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47104 * 60.00279 * 24 22 20 26 26 H 1.48501 * 109.46932 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46991 * 300.00042 * 24 22 20 28 28 C 1.47019 * 108.70229 * 24.13412 * 19 18 17 29 29 H 1.08995 * 109.46938 * 185.63222 * 1 2 3 30 30 H 1.08998 * 109.46841 * 305.63334 * 1 2 3 31 31 H 1.08998 * 109.47008 * 65.62986 * 1 2 3 32 32 H 1.09010 * 109.46829 * 239.99828 * 2 1 3 33 33 H 1.08999 * 109.47275 * 120.00464 * 2 1 3 34 34 H 1.09004 * 109.51889 * 46.59349 * 8 6 4 35 35 H 1.09001 * 109.52030 * 166.76321 * 8 6 4 36 36 H 0.96995 * 119.50964 * 184.41667 * 11 9 8 37 37 H 0.97000 * 119.52107 * 185.71162 * 14 12 11 38 38 H 1.08997 * 111.00733 * 159.06011 * 17 15 3 39 39 H 1.09009 * 111.00194 * 35.20945 * 17 15 3 40 40 H 1.08993 * 110.37430 * 81.82526 * 18 17 15 41 41 H 1.09007 * 110.36762 * 204.15328 * 18 17 15 42 42 H 0.97002 * 120.00209 * 179.97438 * 23 22 20 43 43 H 1.09002 * 109.87694 * 239.52407 * 28 19 18 44 44 H 1.09001 * 110.01594 * 118.43119 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.3220 1.9885 -1.1642 5 8 2.7260 3.1322 -1.1642 6 6 2.1596 1.2468 -2.4659 7 1 1.2455 0.6540 -2.4345 8 6 3.3601 0.3219 -2.6790 9 6 4.5653 1.1506 -3.0465 10 8 5.6694 0.8123 -2.6773 11 7 4.4145 2.2655 -3.7846 12 6 3.1934 2.7066 -4.1298 13 8 3.0935 3.5782 -4.9709 14 7 2.0807 2.2073 -3.5681 15 6 2.1768 2.1021 1.2655 16 1 1.5955 3.0241 1.2578 17 6 3.6739 2.3995 1.5443 18 6 4.1452 1.0630 2.1697 19 7 3.0066 0.6069 2.9877 20 6 3.0839 -0.2376 4.0630 21 1 2.1876 -0.5133 4.5985 22 6 4.3144 -0.7391 4.4644 23 7 5.4069 -0.4027 3.8120 24 14 4.4200 -1.8905 5.9317 25 1 3.6066 -3.1045 5.6677 26 1 5.8353 -2.2820 6.1529 27 1 3.9019 -1.2007 7.1404 28 6 1.7743 1.2080 2.4572 29 1 -0.3633 -1.0227 0.1009 30 1 -0.3633 0.5987 0.8352 31 1 -0.3633 0.4240 -0.9361 32 1 1.8934 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.5632 -0.2288 -1.7604 35 1 3.1411 -0.3795 -3.4841 36 1 5.1991 2.7582 -4.0715 37 1 1.2122 2.4867 -3.8976 38 1 3.7838 3.2219 2.2510 39 1 4.2098 2.6078 0.6182 40 1 4.3666 0.3357 1.3887 41 1 5.0217 1.2259 2.7970 42 1 6.2668 -0.7529 4.0929 43 1 1.2947 1.8115 3.2279 44 1 1.0928 0.4266 2.1209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033979920.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:35 Heat of formation + Delta-G solvation = -47.466077 kcal Electronic energy + Delta-G solvation = -29676.828387 eV Core-core repulsion = 25631.116599 eV Total energy + Delta-G solvation = -4045.711788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.03418 -40.07668 -38.94233 -37.62358 -35.93714 -35.22053 -34.37460 -32.46228 -31.18668 -30.64081 -28.87025 -27.70782 -25.94619 -24.55812 -23.63556 -23.22015 -21.53479 -20.41839 -19.94167 -18.82481 -18.34313 -17.60605 -17.47277 -16.98726 -16.52752 -16.31250 -16.08505 -15.29660 -14.97647 -14.71619 -14.53024 -14.47277 -13.98488 -13.76800 -13.59835 -13.25257 -13.05228 -12.69196 -12.38492 -12.27892 -12.09576 -11.83014 -11.62168 -11.10859 -11.03275 -10.98620 -10.92873 -10.77967 -10.44064 -10.35504 -10.32782 -10.22071 -10.13812 -10.00906 -9.65992 -9.25378 -8.71562 -8.46367 -6.91576 -5.70281 -3.14221 1.57641 2.22300 2.49888 2.72464 3.05331 3.13986 3.35852 3.40628 3.42641 3.98594 4.07711 4.22710 4.42859 4.59270 4.79536 4.87758 5.01535 5.15178 5.26851 5.35750 5.40629 5.48527 5.60614 5.67604 5.72329 5.80235 5.86963 6.05626 6.12672 6.26208 6.27770 6.46417 6.49428 6.60202 6.66549 6.89740 7.06069 7.34168 7.45132 7.47495 7.56000 7.82072 7.99172 8.12775 8.30521 9.15009 9.75795 10.39621 11.32498 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.018972 B = 0.003915 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.543241 B = 7149.577149 C = 7694.343181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.084 3.916 3 N -0.582 5.582 4 C 0.490 3.510 5 O -0.523 6.523 6 C 0.119 3.881 7 H 0.133 0.867 8 C -0.154 4.154 9 C 0.524 3.476 10 O -0.487 6.487 11 N -0.671 5.671 12 C 0.727 3.273 13 O -0.560 6.560 14 N -0.706 5.706 15 C 0.135 3.865 16 H 0.077 0.923 17 C -0.151 4.151 18 C 0.156 3.844 19 N -0.601 5.601 20 C -0.230 4.230 21 H 0.077 0.923 22 C -0.006 4.006 23 N -0.918 5.918 24 Si 0.914 3.086 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.124 3.876 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.135 0.865 35 H 0.128 0.872 36 H 0.427 0.573 37 H 0.426 0.574 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.011 0.989 41 H 0.105 0.895 42 H 0.254 0.746 43 H 0.033 0.967 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.337 -0.415 -14.142 17.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.039 4.039 3 N -0.315 5.315 4 C 0.274 3.726 5 O -0.399 6.399 6 C 0.009 3.991 7 H 0.151 0.849 8 C -0.194 4.194 9 C 0.311 3.689 10 O -0.357 6.357 11 N -0.340 5.340 12 C 0.427 3.573 13 O -0.435 6.435 14 N -0.364 5.364 15 C 0.032 3.968 16 H 0.095 0.905 17 C -0.191 4.191 18 C 0.032 3.968 19 N -0.328 5.328 20 C -0.358 4.358 21 H 0.095 0.905 22 C -0.202 4.202 23 N -0.565 5.565 24 Si 0.744 3.256 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C -0.002 4.002 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.127 0.873 34 H 0.153 0.847 35 H 0.146 0.854 36 H 0.268 0.732 37 H 0.266 0.734 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.029 0.971 41 H 0.123 0.877 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.391 0.189 -14.120 16.958 hybrid contribution -0.059 -0.373 0.668 0.767 sum -9.450 -0.183 -13.451 16.440 Atomic orbital electron populations 1.22264 0.95655 1.02694 1.02191 1.21892 0.94464 0.82683 1.04824 1.47982 1.63635 1.14153 1.05710 1.20767 0.79034 0.87511 0.85301 1.90748 1.44823 1.17523 1.86775 1.21173 1.01570 0.90145 0.86187 0.84936 1.22329 0.91174 0.98360 1.07584 1.20701 0.91333 0.80640 0.76219 1.90846 1.26915 1.68837 1.49140 1.44141 1.09780 1.27581 1.52539 1.15492 0.80552 0.80638 0.80576 1.91024 1.85293 1.32205 1.34958 1.44714 1.08395 1.47722 1.35594 1.22079 0.98452 0.94307 0.81984 0.90493 1.23333 0.94140 1.01077 1.00523 1.21900 0.93135 0.88644 0.93170 1.44517 1.00775 1.54319 1.33171 1.18980 0.93431 1.19294 1.04077 0.90523 1.24793 0.95427 1.00619 0.99383 1.69806 0.97825 1.47616 1.41284 0.86180 0.76731 0.80461 0.82227 1.21198 1.21576 1.21167 1.21709 0.91514 0.94759 0.92258 0.91213 0.91516 0.93040 0.90837 0.87253 0.84732 0.85408 0.73181 0.73431 0.91383 0.91674 0.97104 0.87730 0.93553 0.94945 0.94220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 9.70 37.16 0.36 -1.09 16 2 C 0.08 0.94 4.89 -4.04 -0.02 0.92 16 3 N -0.58 -8.01 2.62 -164.03 -0.43 -8.44 16 4 C 0.49 6.63 6.18 -10.99 -0.07 6.56 16 5 O -0.52 -9.14 15.00 5.55 0.08 -9.06 16 6 C 0.12 1.05 2.79 -69.11 -0.19 0.86 16 7 H 0.13 0.65 6.44 -51.93 -0.33 0.31 16 8 C -0.15 -1.38 5.20 -27.81 -0.14 -1.52 16 9 C 0.52 6.74 7.45 -11.03 -0.08 6.65 16 10 O -0.49 -8.10 17.93 5.60 0.10 -8.00 16 11 N -0.67 -8.19 5.18 -16.02 -0.08 -8.28 16 12 C 0.73 9.12 7.98 -87.75 -0.70 8.42 16 13 O -0.56 -8.65 17.97 5.33 0.10 -8.56 16 14 N -0.71 -6.66 4.90 -60.12 -0.29 -6.95 16 15 C 0.13 2.27 3.27 -66.10 -0.22 2.05 16 16 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 17 C -0.15 -3.01 6.48 -24.58 -0.16 -3.17 16 18 C 0.16 3.69 5.87 -2.53 -0.01 3.67 16 19 N -0.60 -14.16 3.27 -170.08 -0.56 -14.71 16 20 C -0.23 -5.99 10.27 -15.06 -0.15 -6.14 16 21 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 23 N -0.92 -26.03 10.09 55.49 0.56 -25.47 16 24 Si 0.91 21.22 29.55 -169.99 -5.02 16.20 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 28 C 0.12 2.29 5.98 -3.07 -0.02 2.27 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.67 7.07 -51.93 -0.37 0.30 16 31 H 0.05 0.34 7.49 -51.93 -0.39 -0.05 16 32 H 0.07 0.60 4.89 -51.92 -0.25 0.34 16 33 H 0.11 1.62 6.16 -51.93 -0.32 1.30 16 34 H 0.13 1.30 6.70 -51.93 -0.35 0.96 16 35 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.43 4.85 8.86 -40.82 -0.36 4.49 16 37 H 0.43 3.08 8.90 -40.82 -0.36 2.72 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.06 1.34 6.80 -51.92 -0.35 0.99 16 40 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.10 2.87 5.87 -51.92 -0.30 2.56 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.04 0.67 4.27 -51.93 -0.22 0.45 16 LS Contribution 347.81 15.07 5.24 5.24 Total: -1.00 -35.27 347.81 -7.51 -42.78 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.70 Total: 6.03 kcal Atomic # 6 Polarization: 20.72 SS G_CDS: -1.51 Total: 19.22 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -0.80 Total: -63.85 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: 0.28 Total: -25.61 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.27 -7.51 -42.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033979920.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.687 kcal (2) G-P(sol) polarization free energy of solvation -35.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds