Wall clock time and date at job start Fri Apr 10 2020 18:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46491 * 109.47565 * 2 1 4 4 C 1.34777 * 119.99962 * 265.88883 * 3 2 1 5 5 O 1.21289 * 119.99914 * 179.97438 * 4 3 2 6 6 C 1.50698 * 120.00272 * 359.97438 * 4 3 2 7 7 H 1.08996 * 109.46045 * 39.99663 * 6 4 3 8 8 C 1.53042 * 109.46072 * 280.01766 * 6 4 3 9 9 C 1.50807 * 109.18907 * 286.68193 * 8 6 4 10 10 O 1.21234 * 120.01724 * 145.78570 * 9 8 6 11 11 N 1.34554 * 119.96423 * 325.76916 * 9 8 6 12 12 C 1.34350 * 120.98889 * 4.43051 * 11 9 8 13 13 O 1.21537 * 119.21007 * 192.04529 * 12 11 9 14 14 N 1.34271 * 121.57310 * 12.02610 * 12 11 9 15 15 C 1.46502 * 119.99879 * 85.88150 * 3 2 1 16 16 H 1.08999 * 110.64462 * 236.83037 * 15 3 2 17 17 C 1.55159 * 110.71934 * 113.69426 * 15 3 2 18 18 C 1.54904 * 101.58199 * 277.14356 * 17 15 3 19 19 N 1.47427 * 104.83018 * 322.98630 * 18 17 15 20 20 C 1.36939 * 125.65172 * 204.09456 * 19 18 17 21 21 H 1.07992 * 120.00247 * 180.02562 * 20 19 18 22 22 C 1.38814 * 119.99435 * 0.02657 * 20 19 18 23 23 N 1.31620 * 120.00555 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99624 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47104 * 60.00279 * 24 22 20 26 26 H 1.48501 * 109.46932 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46991 * 300.00042 * 24 22 20 28 28 C 1.47019 * 108.70229 * 24.13412 * 19 18 17 29 29 H 1.08995 * 109.46938 * 185.63222 * 1 2 3 30 30 H 1.08998 * 109.46841 * 305.63334 * 1 2 3 31 31 H 1.08998 * 109.47008 * 65.62986 * 1 2 3 32 32 H 1.09010 * 109.46829 * 239.99828 * 2 1 3 33 33 H 1.08999 * 109.47275 * 120.00464 * 2 1 3 34 34 H 1.09004 * 109.51889 * 46.59349 * 8 6 4 35 35 H 1.09001 * 109.52030 * 166.76321 * 8 6 4 36 36 H 0.96995 * 119.50964 * 184.41667 * 11 9 8 37 37 H 0.97000 * 119.52107 * 185.71162 * 14 12 11 38 38 H 1.08997 * 111.00733 * 159.06011 * 17 15 3 39 39 H 1.09009 * 111.00194 * 35.20945 * 17 15 3 40 40 H 1.08993 * 110.37430 * 81.82526 * 18 17 15 41 41 H 1.09007 * 110.36762 * 204.15328 * 18 17 15 42 42 H 0.97002 * 120.00209 * 179.97438 * 23 22 20 43 43 H 1.09002 * 109.87694 * 239.52407 * 28 19 18 44 44 H 1.09001 * 110.01594 * 118.43119 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.3220 1.9885 -1.1642 5 8 2.7260 3.1322 -1.1642 6 6 2.1596 1.2468 -2.4659 7 1 1.2455 0.6540 -2.4345 8 6 3.3601 0.3219 -2.6790 9 6 4.5653 1.1506 -3.0465 10 8 5.6694 0.8123 -2.6773 11 7 4.4145 2.2655 -3.7846 12 6 3.1934 2.7066 -4.1298 13 8 3.0935 3.5782 -4.9709 14 7 2.0807 2.2073 -3.5681 15 6 2.1768 2.1021 1.2655 16 1 1.5955 3.0241 1.2578 17 6 3.6739 2.3995 1.5443 18 6 4.1452 1.0630 2.1697 19 7 3.0066 0.6069 2.9877 20 6 3.0839 -0.2376 4.0630 21 1 2.1876 -0.5133 4.5985 22 6 4.3144 -0.7391 4.4644 23 7 5.4069 -0.4027 3.8120 24 14 4.4200 -1.8905 5.9317 25 1 3.6066 -3.1045 5.6677 26 1 5.8353 -2.2820 6.1529 27 1 3.9019 -1.2007 7.1404 28 6 1.7743 1.2080 2.4572 29 1 -0.3633 -1.0227 0.1009 30 1 -0.3633 0.5987 0.8352 31 1 -0.3633 0.4240 -0.9361 32 1 1.8934 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.5632 -0.2288 -1.7604 35 1 3.1411 -0.3795 -3.4841 36 1 5.1991 2.7582 -4.0715 37 1 1.2122 2.4867 -3.8976 38 1 3.7838 3.2219 2.2510 39 1 4.2098 2.6078 0.6182 40 1 4.3666 0.3357 1.3887 41 1 5.0217 1.2259 2.7970 42 1 6.2668 -0.7529 4.0929 43 1 1.2947 1.8115 3.2279 44 1 1.0928 0.4266 2.1209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033979920.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:34 Heat of formation + Delta-G solvation = -76.168303 kcal Electronic energy + Delta-G solvation = -29678.073009 eV Core-core repulsion = 25631.116599 eV Total energy + Delta-G solvation = -4046.956410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.99527 -41.25094 -40.00882 -39.04242 -36.95893 -36.54454 -35.39090 -34.19896 -32.06623 -31.94674 -30.36480 -29.26683 -27.03164 -26.25261 -24.62424 -24.16787 -22.76427 -22.02425 -21.11892 -19.99885 -19.29282 -18.91975 -18.62622 -18.43779 -17.68041 -17.31256 -17.11559 -16.76759 -16.34863 -15.81690 -15.77666 -15.64759 -15.38463 -14.97570 -14.69836 -14.54427 -14.17394 -13.81478 -13.54744 -13.44758 -13.39383 -13.27511 -12.90396 -12.77023 -12.61959 -12.36703 -12.06884 -11.96740 -11.94901 -11.89302 -11.67575 -11.55785 -11.48657 -11.40726 -11.31603 -10.70535 -10.26604 -9.65462 -8.86674 -7.73785 -5.18722 0.58169 1.31118 1.48312 1.50248 1.52622 1.59124 1.75491 2.11632 2.19795 2.52349 3.16858 3.22486 3.37849 3.38459 3.69065 3.78744 3.95681 4.03925 4.07453 4.14257 4.25543 4.39080 4.44401 4.56391 4.66933 4.70891 4.80880 4.89485 4.97529 5.00478 5.05702 5.15322 5.22729 5.47095 5.52473 5.58924 5.61952 5.74815 5.80455 6.12739 6.30044 6.38299 6.40925 7.03179 7.09677 7.11568 7.79943 8.43773 9.27788 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.018972 B = 0.003915 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.543241 B = 7149.577149 C = 7694.343181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.079 3.921 3 N -0.583 5.583 4 C 0.483 3.517 5 O -0.568 6.568 6 C 0.131 3.869 7 H 0.192 0.808 8 C -0.151 4.151 9 C 0.519 3.481 10 O -0.536 6.536 11 N -0.672 5.672 12 C 0.726 3.274 13 O -0.593 6.593 14 N -0.688 5.688 15 C 0.148 3.852 16 H 0.088 0.912 17 C -0.141 4.141 18 C 0.170 3.830 19 N -0.616 5.616 20 C -0.233 4.233 21 H 0.088 0.912 22 C -0.065 4.065 23 N -0.951 5.951 24 Si 0.977 3.023 25 H -0.273 1.273 26 H -0.301 1.301 27 H -0.280 1.280 28 C 0.124 3.876 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.131 0.869 35 H 0.181 0.819 36 H 0.425 0.575 37 H 0.440 0.560 38 H 0.062 0.938 39 H 0.055 0.945 40 H -0.011 1.011 41 H 0.062 0.938 42 H 0.244 0.756 43 H 0.035 0.965 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.757 -1.910 -15.273 20.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.042 4.042 3 N -0.315 5.315 4 C 0.269 3.731 5 O -0.447 6.447 6 C 0.022 3.978 7 H 0.209 0.791 8 C -0.190 4.190 9 C 0.308 3.692 10 O -0.411 6.411 11 N -0.340 5.340 12 C 0.426 3.574 13 O -0.470 6.470 14 N -0.347 5.347 15 C 0.044 3.956 16 H 0.106 0.894 17 C -0.180 4.180 18 C 0.045 3.955 19 N -0.343 5.343 20 C -0.362 4.362 21 H 0.106 0.894 22 C -0.257 4.257 23 N -0.601 5.601 24 Si 0.806 3.194 25 H -0.198 1.198 26 H -0.228 1.228 27 H -0.206 1.206 28 C 0.000 4.000 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.128 0.872 33 H 0.089 0.911 34 H 0.149 0.851 35 H 0.198 0.802 36 H 0.266 0.734 37 H 0.282 0.718 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.007 0.993 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.911 -1.324 -15.260 20.032 hybrid contribution 0.998 0.141 1.022 1.435 sum -11.913 -1.183 -14.238 18.602 Atomic orbital electron populations 1.22227 0.92998 1.03765 1.03200 1.22094 0.96542 0.80776 1.04834 1.48036 1.63655 1.15085 1.04692 1.21660 0.77634 0.87243 0.86572 1.90741 1.46593 1.19814 1.87545 1.21372 1.03974 0.89500 0.82928 0.79128 1.22504 0.88967 0.98325 1.09239 1.21518 0.92045 0.80532 0.75074 1.90830 1.29113 1.70020 1.51089 1.44215 1.10051 1.27573 1.52179 1.15642 0.81021 0.80327 0.80371 1.91006 1.85746 1.33656 1.36598 1.44628 1.08066 1.47162 1.34826 1.21770 0.95634 0.94822 0.83335 0.89406 1.23111 0.96722 0.98705 0.99476 1.21484 0.92253 0.89862 0.91914 1.44684 1.02490 1.54240 1.32884 1.19410 0.93684 1.18729 1.04339 0.89388 1.25592 0.95290 1.02714 1.02134 1.70084 0.97934 1.49092 1.42945 0.85171 0.75995 0.78973 0.79282 1.19843 1.22790 1.20577 1.21864 0.89928 0.95454 0.92796 0.89545 0.93163 0.89979 0.87198 0.91094 0.85136 0.80202 0.73391 0.71805 0.91971 0.92669 0.99298 0.91987 0.94630 0.94700 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.70 71.98 0.70 -1.29 16 2 C 0.08 1.48 4.89 86.38 0.42 1.90 16 3 N -0.58 -14.66 2.62 -791.24 -2.07 -16.73 16 4 C 0.48 11.83 6.18 87.66 0.54 12.37 16 5 O -0.57 -19.24 15.00 -3.06 -0.05 -19.29 16 6 C 0.13 1.73 2.79 44.28 0.12 1.85 16 7 H 0.19 0.42 6.44 -2.39 -0.02 0.41 16 8 C -0.15 -2.14 5.20 29.90 0.16 -1.99 16 9 C 0.52 12.87 7.45 87.73 0.65 13.52 16 10 O -0.54 -18.25 17.93 -2.89 -0.05 -18.31 16 11 N -0.67 -16.08 5.18 -441.66 -2.29 -18.37 16 12 C 0.73 17.05 7.98 179.35 1.43 18.48 16 13 O -0.59 -17.81 17.97 -3.83 -0.07 -17.88 16 14 N -0.69 -10.55 4.90 -462.67 -2.27 -12.82 16 15 C 0.15 4.85 3.27 46.18 0.15 5.00 16 16 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 17 C -0.14 -5.75 6.48 31.99 0.21 -5.54 16 18 C 0.17 8.37 5.87 86.85 0.51 8.88 16 19 N -0.62 -29.29 3.27 -692.01 -2.26 -31.55 16 20 C -0.23 -12.15 10.27 84.03 0.86 -11.29 16 21 H 0.09 4.30 7.83 -2.91 -0.02 4.27 16 22 C -0.06 -3.53 5.49 84.86 0.47 -3.07 16 23 N -0.95 -56.13 10.09 21.65 0.22 -55.91 16 24 Si 0.98 44.03 29.55 68.60 2.03 46.06 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 27 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 28 C 0.12 4.46 5.98 86.73 0.52 4.98 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.80 7.07 -2.39 -0.02 0.79 16 31 H 0.08 0.54 7.49 -2.39 -0.02 0.52 16 32 H 0.11 1.23 4.89 -2.38 -0.01 1.22 16 33 H 0.07 1.95 6.16 -2.39 -0.01 1.94 16 34 H 0.13 2.12 6.70 -2.38 -0.02 2.10 16 35 H 0.18 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.43 9.99 8.86 -92.71 -0.82 9.17 16 37 H 0.44 4.53 8.90 -92.71 -0.83 3.71 16 38 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.05 2.36 6.80 -2.38 -0.02 2.34 16 40 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 41 H 0.06 3.61 5.87 -2.38 -0.01 3.60 16 42 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 43 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.07 2.10 4.27 -2.39 -0.01 2.09 16 Total: -1.00 -82.99 347.81 -0.63 -83.63 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -0.57 Total: 17.35 kcal Atomic # 6 Polarization: 37.06 SS G_CDS: 6.74 Total: 43.80 kcal Atomic # 7 Polarization: -126.70 SS G_CDS: -8.67 Total: -135.37 kcal Atomic # 8 Polarization: -55.31 SS G_CDS: -0.17 Total: -55.47 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -82.99 -0.63 -83.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033979920.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.459 kcal (2) G-P(sol) polarization free energy of solvation -82.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds