Wall clock time and date at job start Fri Apr 10 2020 18:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47436 * 2 1 4 4 C 1.35993 * 117.00467 * 179.97438 * 3 2 1 5 5 C 1.39685 * 125.67444 * 180.02562 * 4 3 2 6 6 C 1.37988 * 107.64318 * 180.02562 * 5 4 3 7 7 C 1.47166 * 126.43905 * 180.02562 * 6 5 4 8 8 O 1.21628 * 119.99965 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00233 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00525 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47407 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.51140 * 60.10415 * 11 10 9 13 13 C 1.53717 * 109.44245 * 180.38673 * 11 10 9 14 14 N 1.47154 * 108.16009 * 172.37554 * 13 11 10 15 15 C 1.36931 * 120.97887 * 129.43492 * 14 13 11 16 16 H 1.08005 * 120.00440 * 333.49504 * 15 14 13 17 17 C 1.38821 * 119.99883 * 153.49763 * 15 14 13 18 18 N 1.31619 * 119.99631 * 343.07823 * 17 15 14 19 19 Si 1.86796 * 119.99899 * 162.80446 * 17 15 14 20 20 H 1.48494 * 109.47313 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47337 * 119.99994 * 19 17 15 22 22 H 1.48503 * 109.46949 * 240.00023 * 19 17 15 23 23 C 1.47149 * 118.03579 * 309.15864 * 14 13 11 24 24 C 1.53296 * 108.38694 * 50.78628 * 23 14 13 25 25 O 1.42963 * 109.22250 * 307.69880 * 24 23 14 26 26 N 1.36675 * 107.12152 * 0.25823 * 6 5 4 27 27 H 0.97006 * 126.09342 * 179.71916 * 26 6 5 28 28 N 1.31222 * 125.66947 * 0.04325 * 4 3 2 29 29 H 1.08994 * 109.47180 * 300.00197 * 1 2 3 30 30 H 1.09003 * 109.46545 * 60.00324 * 1 2 3 31 31 H 1.09005 * 109.46739 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47557 * 239.99496 * 2 1 3 33 33 H 1.09010 * 109.46881 * 119.99908 * 2 1 3 34 34 H 1.07997 * 126.17866 * 0.02562 * 5 4 3 35 35 H 0.97008 * 119.99748 * 359.97438 * 9 7 6 36 36 H 1.09007 * 109.46800 * 59.99495 * 10 9 7 37 37 H 1.08997 * 109.46982 * 300.00091 * 10 9 7 38 38 H 1.08999 * 109.83737 * 52.69713 * 13 11 10 39 39 H 1.09001 * 109.74797 * 292.00152 * 13 11 10 40 40 H 0.97003 * 119.99304 * 179.97438 * 18 17 15 41 41 H 1.08993 * 109.68413 * 170.50997 * 23 14 13 42 42 H 1.08997 * 109.68203 * 291.02940 * 23 14 13 43 43 H 1.09004 * 109.50741 * 67.61742 * 24 23 14 44 44 H 1.08993 * 109.51437 * 187.72356 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.0135 2.7572 0.0011 6 6 5.3703 2.5057 0.0010 7 6 6.4455 3.5105 0.0020 8 8 6.1707 4.6953 0.0026 9 7 7.7348 3.1178 0.0011 10 6 8.8052 4.1180 0.0016 11 6 10.1627 3.4123 0.0011 12 1 10.2494 2.7905 -0.8899 13 6 11.2852 4.4623 0.0113 14 7 12.5664 3.7623 0.1962 15 6 13.6251 3.9975 -0.6398 16 1 13.4504 4.3349 -1.6508 17 6 14.9230 3.8022 -0.1878 18 7 15.1648 3.7199 1.1033 19 14 16.3252 3.6486 -1.4124 20 1 15.7919 3.7682 -2.7931 21 1 17.3158 4.7276 -1.1686 22 1 16.9825 2.3270 -1.2490 23 6 12.6780 2.8068 1.3097 24 6 11.4893 1.8414 1.2395 25 8 10.2757 2.5936 1.1677 26 7 5.5278 1.1481 -0.0056 27 1 6.3724 0.6708 -0.0111 28 7 4.2529 0.5689 0.0003 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.5455 3.7305 0.0016 35 1 7.9540 2.1729 0.0003 36 1 8.7201 4.7408 0.8922 37 1 8.7195 4.7422 -0.8878 38 1 11.1284 5.1635 0.8310 39 1 11.2945 5.0008 -0.9363 40 1 16.0718 3.5830 1.4191 41 1 13.6100 2.2485 1.2222 42 1 12.6597 3.3442 2.2578 43 1 11.5818 1.2140 0.3529 44 1 11.4772 1.2135 2.1303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035408222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:39 Heat of formation + Delta-G solvation = -15.305299 kcal Electronic energy + Delta-G solvation = -26823.286167 eV Core-core repulsion = 22778.968975 eV Total energy + Delta-G solvation = -4044.317192 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.69259 -39.70729 -38.66672 -38.32185 -35.16490 -34.42112 -32.50585 -31.77270 -31.10525 -30.40037 -30.34370 -27.67936 -25.87804 -24.32714 -23.34467 -22.95685 -21.89808 -21.42154 -20.55409 -19.87273 -18.99011 -17.33014 -17.03186 -16.69858 -16.32745 -16.05277 -15.93104 -15.33454 -15.07962 -14.67331 -14.52748 -14.33417 -14.07290 -13.90724 -13.78189 -13.33808 -13.20519 -13.01021 -12.97528 -12.81188 -12.47072 -12.07469 -11.68045 -11.24902 -11.21039 -11.19067 -10.94372 -10.79639 -10.51745 -10.37287 -10.30529 -10.06828 -9.76856 -9.50553 -9.23133 -9.17656 -8.97491 -8.62336 -6.84339 -5.92096 -3.36109 0.79409 2.07953 2.25173 2.59659 2.99950 3.09741 3.28561 3.36981 3.38816 4.08343 4.31849 4.35889 4.43994 4.58867 4.65286 4.93104 4.96868 5.08584 5.11954 5.25366 5.33105 5.39949 5.41532 5.43990 5.61532 5.65726 5.70423 5.81819 5.89176 6.02200 6.11943 6.25674 6.27645 6.38464 6.56481 6.65461 6.93943 7.00444 7.13666 7.27820 7.43102 7.63358 7.72683 7.85798 8.25233 9.03374 9.65939 10.22300 11.16016 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.033814 B = 0.002011 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.865829 B =13919.636012 C =14196.698966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.288 6.288 4 C 0.261 3.739 5 C -0.194 4.194 6 C 0.065 3.935 7 C 0.582 3.418 8 O -0.515 6.515 9 N -0.711 5.711 10 C 0.130 3.870 11 C 0.063 3.937 12 H 0.060 0.940 13 C 0.122 3.878 14 N -0.593 5.593 15 C -0.257 4.257 16 H 0.070 0.930 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.905 3.095 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.139 3.861 24 C 0.040 3.960 25 O -0.391 6.391 26 N -0.447 5.447 27 H 0.446 0.554 28 N -0.317 5.317 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.168 0.832 35 H 0.400 0.600 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.032 0.968 39 H 0.065 0.935 40 H 0.255 0.745 41 H 0.095 0.905 42 H 0.029 0.971 43 H 0.041 0.959 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.558 -8.206 -1.940 24.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.192 6.192 4 C 0.058 3.942 5 C -0.225 4.225 6 C -0.065 4.065 7 C 0.365 3.635 8 O -0.389 6.389 9 N -0.362 5.362 10 C 0.007 3.993 11 C 0.003 3.997 12 H 0.078 0.922 13 C -0.006 4.006 14 N -0.317 5.317 15 C -0.386 4.386 16 H 0.088 0.912 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.735 3.265 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.215 1.215 23 C 0.013 3.987 24 C -0.038 4.038 25 O -0.311 6.311 26 N -0.165 5.165 27 H 0.292 0.708 28 N -0.160 5.160 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.185 0.815 35 H 0.235 0.765 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.049 0.951 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.113 0.887 42 H 0.047 0.953 43 H 0.059 0.941 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.826 -8.344 -1.730 24.365 hybrid contribution 1.592 -0.270 -0.637 1.736 sum -21.234 -8.613 -2.367 23.036 Atomic orbital electron populations 1.21799 0.92572 1.03002 1.03582 1.22748 0.95537 0.81093 1.02322 1.86321 1.13695 1.29802 1.89427 1.20226 0.84454 0.91939 0.97612 1.21071 0.89673 0.98304 1.13443 1.21314 0.95404 0.84389 1.05429 1.17014 0.81561 0.87211 0.77741 1.90875 1.82820 1.15998 1.49179 1.45826 1.05173 1.11096 1.74076 1.21572 0.83693 0.90521 1.03555 1.22924 0.93866 0.94098 0.88813 0.92173 1.21524 0.86392 0.92577 1.00076 1.44087 1.08642 1.44999 1.33974 1.19241 0.84448 1.42438 0.92503 0.91224 1.25066 0.97563 1.01270 0.95709 1.70041 1.19827 1.52899 1.11826 0.86178 0.82185 0.77481 0.80658 1.20185 1.21569 1.21469 1.21447 0.96115 0.90781 0.90354 1.23336 0.86031 0.94219 1.00203 1.87769 1.40160 1.60198 1.42931 1.46104 1.06986 1.03520 1.59893 0.70752 1.77327 0.88126 1.20221 1.30329 0.91426 0.91448 0.90194 0.91695 0.91676 0.81491 0.76542 0.90039 0.89492 0.95055 0.91627 0.93483 0.88723 0.95298 0.94052 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.28 37.16 0.38 -0.43 16 2 C 0.06 0.45 6.33 37.16 0.24 0.68 16 3 O -0.29 -3.05 10.22 -19.72 -0.20 -3.25 16 4 C 0.26 3.03 7.85 -17.27 -0.14 2.90 16 5 C -0.19 -2.26 10.63 -39.13 -0.42 -2.68 16 6 C 0.07 0.74 7.12 -82.18 -0.59 0.16 16 7 C 0.58 7.40 7.80 -12.64 -0.10 7.30 16 8 O -0.51 -8.20 16.90 5.25 0.09 -8.11 16 9 N -0.71 -8.18 5.44 -61.47 -0.33 -8.52 16 10 C 0.13 1.73 5.37 -4.05 -0.02 1.71 16 11 C 0.06 0.99 2.88 -26.36 -0.08 0.92 16 12 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 13 C 0.12 2.37 6.05 -3.31 -0.02 2.35 16 14 N -0.59 -14.16 3.04 -171.57 -0.52 -14.68 16 15 C -0.26 -6.75 9.65 -15.06 -0.15 -6.89 16 16 H 0.07 1.79 7.89 -52.48 -0.41 1.37 16 17 C 0.00 0.07 4.95 -17.43 -0.09 -0.01 16 18 N -0.90 -25.30 11.14 55.49 0.62 -24.68 16 19 Si 0.91 20.90 29.59 -169.99 -5.03 15.87 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.14 3.15 5.44 -3.53 -0.02 3.13 16 24 C 0.04 0.71 6.99 37.31 0.26 0.97 16 25 O -0.39 -6.64 10.13 -35.23 -0.36 -6.99 16 26 N -0.45 -4.32 7.33 33.41 0.24 -4.08 16 27 H 0.45 3.02 8.23 -182.64 -1.50 1.51 16 28 N -0.32 -3.58 12.05 30.45 0.37 -3.21 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 34 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.40 3.79 7.52 -40.82 -0.31 3.48 16 36 H 0.08 1.18 8.14 -51.92 -0.42 0.75 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.21 7.96 -51.93 -0.41 0.80 16 40 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.09 2.38 6.14 -51.93 -0.32 2.06 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -31.96 370.31 -7.86 -39.82 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.59 Total: 2.16 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -0.73 Total: 10.10 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.37 Total: -55.18 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.47 Total: -18.36 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.96 -7.86 -39.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035408222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.515 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds