Wall clock time and date at job start Fri Apr 10 2020 18:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47436 * 2 1 4 4 C 1.35993 * 117.00467 * 179.97438 * 3 2 1 5 5 C 1.39685 * 125.67444 * 180.02562 * 4 3 2 6 6 C 1.37988 * 107.64318 * 180.02562 * 5 4 3 7 7 C 1.47166 * 126.43905 * 180.02562 * 6 5 4 8 8 O 1.21628 * 119.99965 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00233 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00525 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47407 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.51140 * 60.10415 * 11 10 9 13 13 C 1.53717 * 109.44245 * 180.38673 * 11 10 9 14 14 N 1.47154 * 108.16009 * 172.37554 * 13 11 10 15 15 C 1.36931 * 120.97887 * 129.43492 * 14 13 11 16 16 H 1.08005 * 120.00440 * 333.49504 * 15 14 13 17 17 C 1.38821 * 119.99883 * 153.49763 * 15 14 13 18 18 N 1.31619 * 119.99631 * 343.07823 * 17 15 14 19 19 Si 1.86796 * 119.99899 * 162.80446 * 17 15 14 20 20 H 1.48494 * 109.47313 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47337 * 119.99994 * 19 17 15 22 22 H 1.48503 * 109.46949 * 240.00023 * 19 17 15 23 23 C 1.47149 * 118.03579 * 309.15864 * 14 13 11 24 24 C 1.53296 * 108.38694 * 50.78628 * 23 14 13 25 25 O 1.42963 * 109.22250 * 307.69880 * 24 23 14 26 26 N 1.36675 * 107.12152 * 0.25823 * 6 5 4 27 27 H 0.97006 * 126.09342 * 179.71916 * 26 6 5 28 28 N 1.31222 * 125.66947 * 0.04325 * 4 3 2 29 29 H 1.08994 * 109.47180 * 300.00197 * 1 2 3 30 30 H 1.09003 * 109.46545 * 60.00324 * 1 2 3 31 31 H 1.09005 * 109.46739 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47557 * 239.99496 * 2 1 3 33 33 H 1.09010 * 109.46881 * 119.99908 * 2 1 3 34 34 H 1.07997 * 126.17866 * 0.02562 * 5 4 3 35 35 H 0.97008 * 119.99748 * 359.97438 * 9 7 6 36 36 H 1.09007 * 109.46800 * 59.99495 * 10 9 7 37 37 H 1.08997 * 109.46982 * 300.00091 * 10 9 7 38 38 H 1.08999 * 109.83737 * 52.69713 * 13 11 10 39 39 H 1.09001 * 109.74797 * 292.00152 * 13 11 10 40 40 H 0.97003 * 119.99304 * 179.97438 * 18 17 15 41 41 H 1.08993 * 109.68413 * 170.50997 * 23 14 13 42 42 H 1.08997 * 109.68203 * 291.02940 * 23 14 13 43 43 H 1.09004 * 109.50741 * 67.61742 * 24 23 14 44 44 H 1.08993 * 109.51437 * 187.72356 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.0135 2.7572 0.0011 6 6 5.3703 2.5057 0.0010 7 6 6.4455 3.5105 0.0020 8 8 6.1707 4.6953 0.0026 9 7 7.7348 3.1178 0.0011 10 6 8.8052 4.1180 0.0016 11 6 10.1627 3.4123 0.0011 12 1 10.2494 2.7905 -0.8899 13 6 11.2852 4.4623 0.0113 14 7 12.5664 3.7623 0.1962 15 6 13.6251 3.9975 -0.6398 16 1 13.4504 4.3349 -1.6508 17 6 14.9230 3.8022 -0.1878 18 7 15.1648 3.7199 1.1033 19 14 16.3252 3.6486 -1.4124 20 1 15.7919 3.7682 -2.7931 21 1 17.3158 4.7276 -1.1686 22 1 16.9825 2.3270 -1.2490 23 6 12.6780 2.8068 1.3097 24 6 11.4893 1.8414 1.2395 25 8 10.2757 2.5936 1.1677 26 7 5.5278 1.1481 -0.0056 27 1 6.3724 0.6708 -0.0111 28 7 4.2529 0.5689 0.0003 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.5455 3.7305 0.0016 35 1 7.9540 2.1729 0.0003 36 1 8.7201 4.7408 0.8922 37 1 8.7195 4.7422 -0.8878 38 1 11.1284 5.1635 0.8310 39 1 11.2945 5.0008 -0.9363 40 1 16.0718 3.5830 1.4191 41 1 13.6100 2.2485 1.2222 42 1 12.6597 3.3442 2.2578 43 1 11.5818 1.2140 0.3529 44 1 11.4772 1.2135 2.1303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035408222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:38 Heat of formation + Delta-G solvation = -40.878877 kcal Electronic energy + Delta-G solvation = -26824.395120 eV Core-core repulsion = 22778.968975 eV Total energy + Delta-G solvation = -4045.426146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.55992 -40.78655 -39.95267 -39.22122 -36.58290 -35.90402 -33.48159 -33.09592 -32.48825 -31.48460 -31.14952 -29.25283 -27.38352 -25.29828 -24.88161 -23.98700 -23.07804 -22.26119 -21.71942 -21.19575 -20.01178 -18.86913 -18.09603 -17.62831 -17.42627 -17.22581 -17.00457 -16.73529 -16.38287 -16.10350 -15.64174 -15.49758 -15.23503 -15.07293 -14.93687 -14.68117 -14.61280 -14.44453 -13.80720 -13.50352 -13.41812 -13.22228 -13.02357 -12.73016 -12.64889 -12.50096 -12.17693 -12.06568 -12.02966 -11.87785 -11.83786 -11.45746 -11.27132 -10.80817 -10.55623 -10.46142 -10.17182 -9.80051 -8.75712 -7.91964 -5.39018 -0.11758 1.31864 1.36236 1.45569 1.48107 1.58086 1.65074 2.03355 2.28642 2.47839 2.76471 3.23624 3.46021 3.49430 3.55812 3.94999 4.04635 4.06534 4.12945 4.20142 4.26873 4.39771 4.41493 4.48207 4.51860 4.62940 4.73401 4.76295 4.81051 4.91150 4.95658 5.01996 5.05286 5.15065 5.24533 5.25142 5.56363 5.62068 5.76838 6.18693 6.24331 6.27217 6.32677 6.41752 6.87719 7.06090 7.74463 8.27322 9.14006 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.033814 B = 0.002011 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.865829 B =13919.636012 C =14196.698966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.299 6.299 4 C 0.253 3.747 5 C -0.205 4.205 6 C 0.066 3.934 7 C 0.589 3.411 8 O -0.549 6.549 9 N -0.699 5.699 10 C 0.139 3.861 11 C 0.077 3.923 12 H 0.074 0.926 13 C 0.115 3.885 14 N -0.612 5.612 15 C -0.264 4.264 16 H 0.074 0.926 17 C -0.051 4.051 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.295 1.295 22 H -0.289 1.289 23 C 0.141 3.859 24 C 0.055 3.945 25 O -0.389 6.389 26 N -0.431 5.431 27 H 0.459 0.541 28 N -0.322 5.322 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.169 0.831 35 H 0.413 0.587 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.019 0.981 39 H 0.074 0.926 40 H 0.251 0.749 41 H 0.066 0.934 42 H -0.002 1.002 43 H 0.053 0.947 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.914 -9.580 -3.045 25.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 O -0.204 6.204 4 C 0.050 3.950 5 C -0.237 4.237 6 C -0.065 4.065 7 C 0.373 3.627 8 O -0.425 6.425 9 N -0.350 5.350 10 C 0.016 3.984 11 C 0.017 3.983 12 H 0.092 0.908 13 C -0.011 4.011 14 N -0.337 5.337 15 C -0.394 4.394 16 H 0.092 0.908 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.797 3.203 20 H -0.189 1.189 21 H -0.222 1.222 22 H -0.216 1.216 23 C 0.016 3.984 24 C -0.022 4.022 25 O -0.308 6.308 26 N -0.151 5.151 27 H 0.308 0.692 28 N -0.165 5.165 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.187 0.813 35 H 0.250 0.750 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.037 0.963 39 H 0.093 0.907 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.016 0.984 43 H 0.072 0.928 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -24.206 -9.759 -2.849 26.254 hybrid contribution 1.966 0.181 -0.277 1.994 sum -22.240 -9.578 -3.126 24.416 Atomic orbital electron populations 1.21824 0.90744 1.04379 1.03529 1.22987 0.96984 0.79894 1.02408 1.86321 1.13199 1.31538 1.89299 1.20330 0.84983 0.91889 0.97777 1.21225 0.90072 0.98701 1.13688 1.21008 0.94811 0.84713 1.06008 1.17046 0.81822 0.86861 0.76933 1.90866 1.83309 1.17483 1.50859 1.45630 1.04439 1.11500 1.73434 1.21375 0.82821 0.90469 1.03781 1.22768 0.93564 0.92960 0.88961 0.90798 1.21704 0.85896 0.93505 1.00023 1.44360 1.09560 1.45973 1.33768 1.19596 0.85366 1.41356 0.93067 0.90812 1.25818 0.99869 1.01762 0.97148 1.70195 1.19892 1.54565 1.13557 0.85178 0.79083 0.76845 0.79146 1.18872 1.22198 1.21552 1.21322 0.97324 0.91054 0.88749 1.23143 0.83963 0.93044 1.02083 1.87788 1.39278 1.60130 1.43593 1.46105 1.07255 1.02925 1.58841 0.69172 1.77305 0.88545 1.20323 1.30365 0.91501 0.91455 0.88076 0.91534 0.91620 0.81307 0.75045 0.91067 0.88238 0.96279 0.90739 0.93992 0.91567 0.98415 0.92831 0.87369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 71.98 0.74 -0.59 16 2 C 0.05 0.74 6.33 71.98 0.46 1.19 16 3 O -0.30 -6.07 10.22 -93.47 -0.96 -7.02 16 4 C 0.25 5.60 7.85 85.13 0.67 6.26 16 5 C -0.21 -4.60 10.63 22.56 0.24 -4.36 16 6 C 0.07 1.39 7.12 40.68 0.29 1.68 16 7 C 0.59 13.98 7.80 86.59 0.68 14.65 16 8 O -0.55 -16.91 16.90 -4.12 -0.07 -16.98 16 9 N -0.70 -14.36 5.44 -466.64 -2.54 -16.90 16 10 C 0.14 3.42 5.37 86.38 0.46 3.88 16 11 C 0.08 2.26 2.88 30.84 0.09 2.35 16 12 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 13 C 0.12 4.40 6.05 86.50 0.52 4.92 16 14 N -0.61 -29.20 3.04 -696.72 -2.12 -31.32 16 15 C -0.26 -13.84 9.65 84.04 0.81 -13.03 16 16 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 17 C -0.05 -2.72 4.95 84.86 0.42 -2.30 16 18 N -0.94 -53.81 11.14 21.65 0.24 -53.57 16 19 Si 0.97 43.16 29.59 68.60 2.03 45.19 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 23 C 0.14 6.47 5.44 86.35 0.47 6.94 16 24 C 0.06 1.86 6.99 72.08 0.50 2.36 16 25 O -0.39 -12.27 10.13 -148.98 -1.51 -13.78 16 26 N -0.43 -7.41 7.33 -48.20 -0.35 -7.76 16 27 H 0.46 4.94 8.23 -213.36 -1.76 3.18 16 28 N -0.32 -6.72 12.05 -170.77 -2.06 -8.77 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.17 3.60 8.06 -2.91 -0.02 3.58 16 35 H 0.41 6.48 7.52 -92.70 -0.70 5.79 16 36 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.10 2.26 8.14 -2.39 -0.02 2.25 16 38 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 2.67 7.96 -2.39 -0.02 2.65 16 40 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 41 H 0.07 3.40 6.14 -2.39 -0.01 3.39 16 42 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -69.13 370.31 -2.40 -71.53 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -1.42 Total: 15.42 kcal Atomic # 6 Polarization: 17.62 SS G_CDS: 6.35 Total: 23.96 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -6.83 Total: -118.32 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -2.53 Total: -37.78 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -69.13 -2.40 -71.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035408222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.649 kcal (2) G-P(sol) polarization free energy of solvation -69.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds