Wall clock time and date at job start Fri Apr 10 2020 18:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37009 * 125.65144 * 2 1 4 4 C 1.35148 * 107.87468 * 179.97438 * 3 2 1 5 5 C 1.46659 * 126.37494 * 179.97438 * 4 3 2 6 6 O 1.21705 * 120.00027 * 180.02562 * 5 4 3 7 7 N 1.34777 * 120.00413 * 0.02562 * 5 4 3 8 8 C 1.46498 * 120.00073 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47085 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.51027 * 60.00010 * 9 8 7 11 11 C 1.53293 * 109.51232 * 180.09923 * 9 8 7 12 12 N 1.47157 * 108.38325 * 172.22486 * 11 9 8 13 13 C 1.36934 * 120.98075 * 129.49122 * 12 11 9 14 14 H 1.08005 * 119.99496 * 206.22564 * 13 12 11 15 15 C 1.38807 * 120.00230 * 26.22564 * 13 12 11 16 16 N 1.31619 * 119.99979 * 16.90297 * 15 13 12 17 17 Si 1.86804 * 120.00018 * 196.91052 * 15 13 12 18 18 H 1.48499 * 109.47018 * 59.99646 * 17 15 13 19 19 H 1.48504 * 109.47140 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47060 * 299.99772 * 17 15 13 21 21 C 1.47157 * 118.03475 * 309.46873 * 12 11 9 22 22 C 1.53296 * 108.38713 * 50.53479 * 21 12 11 23 23 O 1.42960 * 109.51128 * 299.90266 * 9 8 7 24 24 N 1.39835 * 107.24593 * 359.97438 * 4 3 2 25 25 C 1.46497 * 126.18245 * 180.02562 * 24 4 3 26 26 C 1.34615 * 125.64780 * 180.30045 * 2 1 3 27 27 O 1.21730 * 125.73092 * 0.03018 * 26 2 1 28 28 H 1.09007 * 109.46822 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47102 * 119.97785 * 1 2 3 30 30 H 1.08998 * 109.47060 * 239.98356 * 1 2 3 31 31 H 1.08002 * 126.06497 * 0.02562 * 3 2 1 32 32 H 0.96999 * 119.99299 * 0.02562 * 7 5 4 33 33 H 1.09005 * 109.47351 * 299.99765 * 8 7 5 34 34 H 1.08994 * 109.47095 * 60.00069 * 8 7 5 35 35 H 1.08995 * 109.68260 * 291.94797 * 11 9 8 36 36 H 1.09007 * 109.67905 * 52.46990 * 11 9 8 37 37 H 0.97003 * 119.99494 * 179.97438 * 16 15 13 38 38 H 1.08995 * 109.67705 * 170.26107 * 21 12 11 39 39 H 1.09004 * 109.67544 * 290.77242 * 21 12 11 40 40 H 1.08999 * 109.51058 * 67.61881 * 22 21 12 41 41 H 1.08994 * 109.50977 * 187.77551 * 22 21 12 42 42 H 1.09000 * 109.46890 * 90.00283 * 25 24 4 43 43 H 1.09001 * 109.47199 * 330.00267 * 25 24 4 44 44 H 1.08998 * 109.47104 * 210.00123 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2636 1.1133 0.0000 4 6 3.5506 0.7007 0.0006 5 6 4.7393 1.5596 0.0003 6 8 5.8499 1.0616 0.0004 7 7 4.6021 2.9003 -0.0002 8 6 5.7896 3.7582 0.0001 9 6 5.3583 5.2262 0.0001 10 1 4.7627 5.4306 0.8898 11 6 6.6003 6.1248 -0.0021 12 7 6.1649 7.5177 -0.1909 13 6 6.5967 8.5109 0.6470 14 1 5.9944 9.3958 0.7909 15 6 7.8084 8.3805 1.3115 16 7 8.6904 7.4927 0.9036 17 14 8.1873 9.4648 2.7847 18 1 7.1712 9.2348 3.8429 19 1 9.5348 9.1305 3.3118 20 1 8.1569 10.8906 2.3707 21 6 5.2522 7.8118 -1.3072 22 6 4.0759 6.8311 -1.2413 23 8 4.5794 5.4950 -1.1681 24 7 3.5376 -0.6976 0.0015 25 6 4.7120 -1.5734 0.0029 26 6 2.2496 -1.0939 -0.0057 27 8 1.8609 -2.2474 -0.0123 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5135 -0.8902 30 1 -0.3633 -0.5141 0.8898 31 1 1.9248 2.1388 0.0004 32 1 3.7170 3.2972 0.0001 33 1 6.3847 3.5548 0.8904 34 1 6.3854 3.5543 -0.8896 35 1 7.1240 6.0296 0.9490 36 1 7.2629 5.8330 -0.8170 37 1 9.5373 7.4018 1.3678 38 1 4.8835 8.8338 -1.2202 39 1 5.7792 7.6910 -2.2537 40 1 3.4752 7.0420 -0.3566 41 1 3.4608 6.9399 -2.1345 42 1 5.0025 -1.7899 1.0309 43 1 5.5357 -1.0775 -0.5107 44 1 4.4716 -2.5044 -0.5104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035617247.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:56 Heat of formation + Delta-G solvation = -27.193195 kcal Electronic energy + Delta-G solvation = -27753.696421 eV Core-core repulsion = 23708.863731 eV Total energy + Delta-G solvation = -4044.832690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.65829 -39.57414 -38.47042 -36.97939 -35.70315 -34.85925 -34.39356 -31.71846 -31.27070 -30.42273 -28.46030 -27.29330 -26.35797 -25.47896 -23.50828 -23.23408 -21.81297 -20.87295 -20.56775 -19.69742 -18.21772 -17.04023 -17.02690 -16.76261 -16.11022 -15.93556 -15.47279 -15.29945 -15.02554 -14.79838 -14.48654 -14.38015 -14.24748 -14.06999 -13.76079 -13.31457 -13.11833 -13.02138 -12.95031 -12.88036 -12.42827 -12.34195 -11.72819 -11.60444 -11.16135 -10.89386 -10.82229 -10.76657 -10.48910 -10.34639 -10.19571 -10.11973 -9.97475 -9.73295 -9.18375 -9.04308 -8.61017 -8.02770 -6.82875 -5.90819 -3.34717 1.14088 1.91297 2.60978 2.71950 3.16819 3.30915 3.37602 3.38176 3.45980 4.15818 4.32675 4.38367 4.65294 4.76148 4.83965 4.91246 5.02332 5.10602 5.17444 5.29268 5.29647 5.45740 5.52479 5.57006 5.74064 5.78089 5.85005 5.92436 6.02930 6.06697 6.13731 6.26725 6.37775 6.41868 6.52376 6.71273 6.94950 6.99143 7.40235 7.46637 7.64357 7.74522 7.97785 8.14030 8.26664 9.04366 9.67231 10.23825 11.17316 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.020583 B = 0.002648 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.048353 B =10571.601905 C =11189.653892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.524 5.524 3 C 0.052 3.948 4 C -0.030 4.030 5 C 0.588 3.412 6 O -0.538 6.538 7 N -0.706 5.706 8 C 0.135 3.865 9 C 0.054 3.946 10 H 0.057 0.943 11 C 0.152 3.848 12 N -0.594 5.594 13 C -0.259 4.259 14 H 0.069 0.931 15 C 0.004 3.996 16 N -0.901 5.901 17 Si 0.905 3.095 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.282 1.282 21 C 0.108 3.892 22 C 0.051 3.949 23 O -0.391 6.391 24 N -0.510 5.510 25 C 0.100 3.900 26 C 0.647 3.353 27 O -0.568 6.568 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.192 0.808 32 H 0.402 0.598 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.032 0.968 37 H 0.257 0.743 38 H 0.062 0.938 39 H 0.027 0.973 40 H 0.043 0.957 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.113 -10.875 -1.964 18.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.241 5.241 3 C -0.078 4.078 4 C -0.139 4.139 5 C 0.373 3.627 6 O -0.416 6.416 7 N -0.356 5.356 8 C 0.012 3.988 9 C -0.005 4.005 10 H 0.075 0.925 11 C 0.026 3.974 12 N -0.318 5.318 13 C -0.388 4.388 14 H 0.086 0.914 15 C -0.195 4.195 16 N -0.545 5.545 17 Si 0.735 3.265 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.208 1.208 21 C -0.018 4.018 22 C -0.028 4.028 23 O -0.310 6.310 24 N -0.229 5.229 25 C -0.041 4.041 26 C 0.350 3.650 27 O -0.446 6.446 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.209 0.791 32 H 0.237 0.763 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.045 0.955 40 H 0.062 0.938 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.421 -12.272 -2.030 19.044 hybrid contribution -0.130 1.129 0.912 1.457 sum -14.551 -11.143 -1.119 18.361 Atomic orbital electron populations 1.21843 0.74535 1.04155 1.03828 1.44948 1.07970 1.06081 1.65140 1.22105 0.87916 0.93418 1.04385 1.19767 0.94077 0.84131 1.15882 1.16704 0.86735 0.81988 0.77264 1.90825 1.25923 1.74220 1.50622 1.45653 1.11108 1.04656 1.74219 1.21501 0.86597 0.87211 1.03520 1.23167 0.96147 0.93348 0.87866 0.92459 1.21306 0.90728 0.82436 1.02954 1.44038 1.54125 1.03520 1.30099 1.19136 1.00589 0.99879 1.19197 0.91377 1.25059 0.94915 0.98942 1.00593 1.70002 1.07024 1.37462 1.40028 0.86329 0.77240 0.80163 0.82791 1.20937 1.21484 1.20807 1.21605 0.91416 0.96984 0.91798 1.23006 0.96195 0.83240 1.00309 1.87771 1.69962 1.29688 1.43574 1.45203 1.07012 1.04959 1.65763 1.21897 0.85324 0.93433 1.03481 1.16121 0.80828 0.84861 0.83204 1.91033 1.76593 1.16329 1.60630 0.88923 0.90459 0.90474 0.79128 0.76294 0.89560 0.90296 0.88531 0.94987 0.93282 0.91969 0.95524 0.93823 0.89969 0.91317 0.88074 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.56 11.03 59.85 0.66 1.22 16 2 N -0.52 -5.07 3.12 -128.78 -0.40 -5.48 16 3 C 0.05 0.44 10.86 -16.34 -0.18 0.26 16 4 C -0.03 -0.34 6.88 -81.91 -0.56 -0.91 16 5 C 0.59 7.88 7.79 -12.86 -0.10 7.78 16 6 O -0.54 -8.93 14.83 5.18 0.08 -8.85 16 7 N -0.71 -8.63 5.43 -61.62 -0.33 -8.97 16 8 C 0.13 2.03 5.37 -4.04 -0.02 2.01 16 9 C 0.05 0.92 2.86 -26.58 -0.08 0.85 16 10 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 11 C 0.15 3.37 4.73 -3.53 -0.02 3.35 16 12 N -0.59 -14.06 3.05 -171.82 -0.52 -14.58 16 13 C -0.26 -6.74 9.65 -15.06 -0.15 -6.88 16 14 H 0.07 1.73 7.88 -52.48 -0.41 1.31 16 15 C 0.00 0.11 4.95 -17.43 -0.09 0.02 16 16 N -0.90 -25.04 11.14 55.49 0.62 -24.42 16 17 Si 0.91 20.75 29.59 -169.99 -5.03 15.72 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C 0.11 2.11 6.74 -3.53 -0.02 2.09 16 22 C 0.05 0.79 6.98 37.31 0.26 1.05 16 23 O -0.39 -6.46 10.14 -35.23 -0.36 -6.82 16 24 N -0.51 -6.55 3.21 -124.83 -0.40 -6.95 16 25 C 0.10 1.13 10.58 59.85 0.63 1.77 16 26 C 0.65 8.71 8.49 -87.08 -0.74 7.97 16 27 O -0.57 -9.34 17.66 5.16 0.09 -9.25 16 28 H 0.09 0.24 8.07 -51.93 -0.42 -0.18 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.19 0.84 7.37 -52.49 -0.39 0.45 16 32 H 0.40 3.88 7.20 -40.82 -0.29 3.59 16 33 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.10 2.37 6.14 -51.93 -0.32 2.05 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.10 1.20 6.44 -51.93 -0.33 0.87 16 44 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -34.48 365.26 -7.52 -41.99 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.36 Total: 1.51 kcal Atomic # 6 Polarization: 20.98 SS G_CDS: -0.40 Total: 20.58 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -1.04 Total: -60.40 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.19 Total: -24.92 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.48 -7.52 -41.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035617247.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.801 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds