Wall clock time and date at job start Fri Apr 10 2020 18:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37009 * 125.65144 * 2 1 4 4 C 1.35148 * 107.87468 * 179.97438 * 3 2 1 5 5 C 1.46659 * 126.37494 * 179.97438 * 4 3 2 6 6 O 1.21705 * 120.00027 * 180.02562 * 5 4 3 7 7 N 1.34777 * 120.00413 * 0.02562 * 5 4 3 8 8 C 1.46498 * 120.00073 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47085 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.51027 * 60.00010 * 9 8 7 11 11 C 1.53293 * 109.51232 * 180.09923 * 9 8 7 12 12 N 1.47157 * 108.38325 * 172.22486 * 11 9 8 13 13 C 1.36934 * 120.98075 * 129.49122 * 12 11 9 14 14 H 1.08005 * 119.99496 * 206.22564 * 13 12 11 15 15 C 1.38807 * 120.00230 * 26.22564 * 13 12 11 16 16 N 1.31619 * 119.99979 * 16.90297 * 15 13 12 17 17 Si 1.86804 * 120.00018 * 196.91052 * 15 13 12 18 18 H 1.48499 * 109.47018 * 59.99646 * 17 15 13 19 19 H 1.48504 * 109.47140 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47060 * 299.99772 * 17 15 13 21 21 C 1.47157 * 118.03475 * 309.46873 * 12 11 9 22 22 C 1.53296 * 108.38713 * 50.53479 * 21 12 11 23 23 O 1.42960 * 109.51128 * 299.90266 * 9 8 7 24 24 N 1.39835 * 107.24593 * 359.97438 * 4 3 2 25 25 C 1.46497 * 126.18245 * 180.02562 * 24 4 3 26 26 C 1.34615 * 125.64780 * 180.30045 * 2 1 3 27 27 O 1.21730 * 125.73092 * 0.03018 * 26 2 1 28 28 H 1.09007 * 109.46822 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47102 * 119.97785 * 1 2 3 30 30 H 1.08998 * 109.47060 * 239.98356 * 1 2 3 31 31 H 1.08002 * 126.06497 * 0.02562 * 3 2 1 32 32 H 0.96999 * 119.99299 * 0.02562 * 7 5 4 33 33 H 1.09005 * 109.47351 * 299.99765 * 8 7 5 34 34 H 1.08994 * 109.47095 * 60.00069 * 8 7 5 35 35 H 1.08995 * 109.68260 * 291.94797 * 11 9 8 36 36 H 1.09007 * 109.67905 * 52.46990 * 11 9 8 37 37 H 0.97003 * 119.99494 * 179.97438 * 16 15 13 38 38 H 1.08995 * 109.67705 * 170.26107 * 21 12 11 39 39 H 1.09004 * 109.67544 * 290.77242 * 21 12 11 40 40 H 1.08999 * 109.51058 * 67.61881 * 22 21 12 41 41 H 1.08994 * 109.50977 * 187.77551 * 22 21 12 42 42 H 1.09000 * 109.46890 * 90.00283 * 25 24 4 43 43 H 1.09001 * 109.47199 * 330.00267 * 25 24 4 44 44 H 1.08998 * 109.47104 * 210.00123 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2636 1.1133 0.0000 4 6 3.5506 0.7007 0.0006 5 6 4.7393 1.5596 0.0003 6 8 5.8499 1.0616 0.0004 7 7 4.6021 2.9003 -0.0002 8 6 5.7896 3.7582 0.0001 9 6 5.3583 5.2262 0.0001 10 1 4.7627 5.4306 0.8898 11 6 6.6003 6.1248 -0.0021 12 7 6.1649 7.5177 -0.1909 13 6 6.5967 8.5109 0.6470 14 1 5.9944 9.3958 0.7909 15 6 7.8084 8.3805 1.3115 16 7 8.6904 7.4927 0.9036 17 14 8.1873 9.4648 2.7847 18 1 7.1712 9.2348 3.8429 19 1 9.5348 9.1305 3.3118 20 1 8.1569 10.8906 2.3707 21 6 5.2522 7.8118 -1.3072 22 6 4.0759 6.8311 -1.2413 23 8 4.5794 5.4950 -1.1681 24 7 3.5376 -0.6976 0.0015 25 6 4.7120 -1.5734 0.0029 26 6 2.2496 -1.0939 -0.0057 27 8 1.8609 -2.2474 -0.0123 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5135 -0.8902 30 1 -0.3633 -0.5141 0.8898 31 1 1.9248 2.1388 0.0004 32 1 3.7170 3.2972 0.0001 33 1 6.3847 3.5548 0.8904 34 1 6.3854 3.5543 -0.8896 35 1 7.1240 6.0296 0.9490 36 1 7.2629 5.8330 -0.8170 37 1 9.5373 7.4018 1.3678 38 1 4.8835 8.8338 -1.2202 39 1 5.7792 7.6910 -2.2537 40 1 3.4752 7.0420 -0.3566 41 1 3.4608 6.9399 -2.1345 42 1 5.0025 -1.7899 1.0309 43 1 5.5357 -1.0775 -0.5107 44 1 4.4716 -2.5044 -0.5104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035617247.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:55 Heat of formation + Delta-G solvation = -52.567966 kcal Electronic energy + Delta-G solvation = -27754.796754 eV Core-core repulsion = 23708.863731 eV Total energy + Delta-G solvation = -4045.933023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.53066 -40.73169 -39.84396 -38.01199 -36.64437 -36.29287 -35.75046 -33.24348 -32.81197 -31.38335 -29.46643 -28.78170 -27.25063 -26.82101 -25.04981 -24.32502 -23.16947 -21.83639 -21.66460 -21.14432 -19.19275 -18.81467 -17.91250 -17.71030 -17.42943 -17.10295 -16.89599 -16.39061 -16.07967 -16.02847 -15.87852 -15.48169 -15.43534 -15.03844 -14.98990 -14.84435 -14.54152 -14.34373 -13.98992 -13.71167 -13.43823 -13.19506 -13.13792 -12.95609 -12.61748 -12.59783 -12.49001 -12.16223 -12.07737 -11.83148 -11.82320 -11.27780 -11.11466 -10.95967 -10.74422 -10.50426 -10.17559 -8.91153 -8.71640 -7.88613 -5.35598 0.31025 1.10267 1.49061 1.51007 1.57939 1.64520 1.79780 2.18674 2.48493 2.57434 2.85550 3.26391 3.53142 3.59220 3.93893 3.97966 4.12933 4.13902 4.19944 4.32627 4.34003 4.39763 4.50566 4.52200 4.58492 4.67587 4.68907 4.73841 4.81465 4.89154 4.95943 5.04144 5.13329 5.23649 5.28843 5.32616 5.58509 5.60796 5.63895 6.09986 6.30593 6.37802 6.52370 7.02763 7.09035 7.16380 7.78476 8.31186 9.16757 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.020583 B = 0.002648 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.048353 B =10571.601905 C =11189.653892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.516 5.516 3 C 0.100 3.900 4 C -0.071 4.071 5 C 0.592 3.408 6 O -0.579 6.579 7 N -0.690 5.690 8 C 0.147 3.853 9 C 0.077 3.923 10 H 0.071 0.929 11 C 0.157 3.843 12 N -0.614 5.614 13 C -0.265 4.265 14 H 0.074 0.926 15 C -0.050 4.050 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.274 1.274 19 H -0.298 1.298 20 H -0.276 1.276 21 C 0.099 3.901 22 C 0.059 3.941 23 O -0.387 6.387 24 N -0.518 5.518 25 C 0.100 3.900 26 C 0.630 3.370 27 O -0.609 6.609 28 H 0.136 0.864 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.244 0.756 32 H 0.419 0.581 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.066 0.934 36 H -0.002 1.002 37 H 0.251 0.749 38 H 0.070 0.930 39 H 0.013 0.987 40 H 0.058 0.942 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.595 -9.611 -1.753 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.231 5.231 3 C -0.031 4.031 4 C -0.179 4.179 5 C 0.380 3.620 6 O -0.460 6.460 7 N -0.342 5.342 8 C 0.022 3.978 9 C 0.018 3.982 10 H 0.089 0.911 11 C 0.030 3.970 12 N -0.339 5.339 13 C -0.395 4.395 14 H 0.092 0.908 15 C -0.246 4.246 16 N -0.581 5.581 17 Si 0.796 3.204 18 H -0.200 1.200 19 H -0.224 1.224 20 H -0.202 1.202 21 C -0.026 4.026 22 C -0.019 4.019 23 O -0.306 6.306 24 N -0.238 5.238 25 C -0.041 4.041 26 C 0.333 3.667 27 O -0.490 6.490 28 H 0.154 0.846 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.260 0.740 32 H 0.257 0.743 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.017 0.983 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.031 0.969 40 H 0.077 0.923 41 H 0.140 0.860 42 H 0.090 0.910 43 H 0.110 0.890 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.986 -10.962 -1.837 21.143 hybrid contribution 0.879 0.798 0.762 1.411 sum -17.107 -10.164 -1.075 19.928 Atomic orbital electron populations 1.22247 0.71934 1.07075 1.03962 1.45233 1.09415 1.05267 1.63190 1.22895 0.86315 0.94821 0.99065 1.19570 0.94639 0.83405 1.20249 1.16872 0.86785 0.82126 0.76234 1.90811 1.27695 1.74907 1.52579 1.45321 1.10924 1.04021 1.73946 1.21140 0.87428 0.86690 1.02505 1.22745 0.93743 0.92983 0.88766 0.91069 1.21106 0.92589 0.83251 1.00007 1.44353 1.54651 1.03651 1.31237 1.19508 1.00442 1.00396 1.19122 0.90835 1.25810 0.95034 1.00553 1.03161 1.70171 1.07266 1.39421 1.41248 0.85336 0.76550 0.78665 0.79856 1.19980 1.22400 1.20201 1.21857 0.92007 0.99014 0.89725 1.23067 0.94571 0.81287 1.02943 1.87791 1.69397 1.30252 1.43165 1.45305 1.07100 1.05783 1.65590 1.21864 0.85093 0.93511 1.03630 1.16385 0.81272 0.85271 0.83782 1.90988 1.77307 1.18115 1.62600 0.84583 0.90415 0.90415 0.74026 0.74317 0.90256 0.92006 0.91520 0.98343 0.94003 0.91128 0.96925 0.92332 0.86020 0.90995 0.88960 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 11.03 127.77 1.41 2.07 16 2 N -0.52 -8.34 3.12 -679.63 -2.12 -10.46 16 3 C 0.10 1.26 10.86 83.17 0.90 2.16 16 4 C -0.07 -1.51 6.88 39.35 0.27 -1.24 16 5 C 0.59 15.22 7.79 86.44 0.67 15.90 16 6 O -0.58 -19.56 14.83 -4.36 -0.06 -19.62 16 7 N -0.69 -15.31 5.43 -467.09 -2.54 -17.85 16 8 C 0.15 4.33 5.37 86.38 0.46 4.80 16 9 C 0.08 2.51 2.86 30.69 0.09 2.60 16 10 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 11 C 0.16 7.08 4.73 86.35 0.41 7.49 16 12 N -0.61 -28.96 3.05 -697.52 -2.13 -31.09 16 13 C -0.26 -13.74 9.65 84.03 0.81 -12.93 16 14 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 15 C -0.05 -2.67 4.95 84.86 0.42 -2.25 16 16 N -0.94 -53.65 11.14 21.65 0.24 -53.41 16 17 Si 0.97 42.90 29.59 68.60 2.03 44.93 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 21 C 0.10 3.71 6.74 86.35 0.58 4.29 16 22 C 0.06 1.61 6.98 72.08 0.50 2.12 16 23 O -0.39 -11.58 10.14 -148.98 -1.51 -13.09 16 24 N -0.52 -13.06 3.21 -667.05 -2.14 -15.21 16 25 C 0.10 2.37 10.58 127.77 1.35 3.72 16 26 C 0.63 16.34 8.49 179.11 1.52 17.86 16 27 O -0.61 -20.08 17.66 -4.44 -0.08 -20.16 16 28 H 0.14 -0.13 8.07 -2.38 -0.02 -0.14 16 29 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.24 0.39 7.37 -2.91 -0.02 0.37 16 32 H 0.42 6.27 7.20 -92.71 -0.67 5.60 16 33 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.07 3.39 6.14 -2.39 -0.01 3.38 16 36 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 37 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 38 H 0.07 2.47 7.96 -2.39 -0.02 2.45 16 39 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.09 2.33 6.44 -2.39 -0.02 2.31 16 44 H 0.08 1.86 8.07 -2.39 -0.02 1.85 16 Total: -1.00 -79.17 365.26 1.45 -77.72 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.36 Total: 11.65 kcal Atomic # 6 Polarization: 37.17 SS G_CDS: 9.41 Total: 46.57 kcal Atomic # 7 Polarization: -119.32 SS G_CDS: -8.69 Total: -128.01 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: -1.65 Total: -52.87 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -79.17 1.45 -77.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035617247.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.157 kcal (2) G-P(sol) polarization free energy of solvation -79.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds