Wall clock time and date at job start Fri Apr 10 2020 18:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99883 * 2 1 4 4 H 1.48497 * 109.47165 * 270.00569 * 3 2 1 5 5 H 1.48509 * 109.47048 * 30.00095 * 3 2 1 6 6 H 1.48495 * 109.47124 * 149.99708 * 3 2 1 7 7 C 1.38807 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00099 * 196.90372 * 7 2 1 9 9 N 1.36939 * 120.00271 * 16.90471 * 7 2 1 10 10 C 1.47145 * 120.97962 * 26.26468 * 9 7 2 11 11 C 1.53294 * 108.38763 * 129.44576 * 10 9 7 12 12 O 1.42963 * 109.22271 * 52.29632 * 11 10 9 13 13 C 1.42963 * 114.16609 * 297.42360 * 12 11 10 14 14 H 1.08997 * 109.55571 * 302.62573 * 13 12 11 15 15 C 1.53003 * 109.50862 * 182.50155 * 13 12 11 16 16 N 1.46504 * 109.46790 * 65.25510 * 15 13 12 17 17 C 1.34779 * 119.99523 * 179.97438 * 16 15 13 18 18 O 1.21282 * 120.00419 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99576 * 180.02562 * 17 16 15 20 20 H 1.08996 * 115.55441 * 34.30399 * 19 17 16 21 21 C 1.53066 * 117.50644 * 248.54344 * 19 17 16 22 22 C 1.52708 * 117.50242 * 180.02562 * 19 17 16 23 23 C 1.53319 * 117.87432 * 359.67347 * 22 19 17 24 24 C 1.53336 * 108.44573 * 163.77871 * 23 22 19 25 25 O 1.42878 * 109.33760 * 53.99766 * 24 23 22 26 26 C 1.42877 * 114.49497 * 295.58562 * 25 24 23 27 27 C 1.53248 * 117.86922 * 215.26336 * 22 19 17 28 28 C 1.47156 * 120.98121 * 206.24102 * 9 7 2 29 29 H 0.96995 * 120.00113 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.67820 * 249.16591 * 10 9 7 31 31 H 1.09002 * 109.68766 * 9.67969 * 10 9 7 32 32 H 1.08994 * 109.51482 * 172.22596 * 11 10 9 33 33 H 1.09004 * 109.51122 * 292.37883 * 11 10 9 34 34 H 1.08996 * 109.47456 * 305.25881 * 15 13 12 35 35 H 1.09000 * 109.46958 * 185.25357 * 15 13 12 36 36 H 0.96999 * 120.00583 * 359.97438 * 16 15 13 37 37 H 1.08997 * 117.50435 * 145.06481 * 21 19 17 38 38 H 1.09000 * 117.50413 * 0.02562 * 21 19 17 39 39 H 1.09002 * 109.67592 * 44.07501 * 23 22 19 40 40 H 1.09005 * 109.62521 * 283.45081 * 23 22 19 41 41 H 1.08999 * 109.49719 * 294.02934 * 24 23 22 42 42 H 1.09004 * 109.49360 * 173.95984 * 24 23 22 43 43 H 1.09003 * 109.49571 * 184.34378 * 26 25 24 44 44 H 1.08997 * 109.50158 * 304.40583 * 26 25 24 45 45 H 1.09000 * 109.63841 * 76.53804 * 27 22 19 46 46 H 1.09005 * 109.63826 * 315.93402 * 27 22 19 47 47 H 1.09002 * 109.67743 * 110.83593 * 28 9 7 48 48 H 1.08995 * 109.68417 * 350.28229 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2714 9 7 1.3700 -2.3623 -0.3459 10 6 0.1979 -2.3447 -1.2352 11 6 0.4256 -3.3659 -2.3556 12 8 0.7663 -4.6290 -1.7791 13 6 1.9823 -4.6203 -1.0274 14 1 2.8021 -4.2867 -1.6635 15 6 2.2756 -6.0314 -0.5138 16 7 2.5348 -6.9202 -1.6492 17 6 2.8188 -8.2204 -1.4360 18 8 2.8594 -8.6546 -0.3043 19 6 3.0860 -9.1345 -2.6039 20 1 3.5946 -8.6770 -3.4524 21 6 2.0506 -10.2218 -2.9019 22 6 3.4014 -10.5969 -2.2970 23 6 3.4318 -11.0304 -0.8267 24 6 3.3571 -12.5609 -0.7705 25 8 4.3932 -13.1153 -1.5832 26 6 4.2714 -12.8262 -2.9771 27 6 4.4134 -11.3153 -3.1961 28 6 1.8342 -3.6634 0.1610 29 1 -0.4850 0.8400 0.0004 30 1 -0.6953 -2.6122 -0.6706 31 1 0.0769 -1.3497 -1.6637 32 1 -0.4853 -3.4686 -2.9453 33 1 1.2392 -3.0272 -2.9971 34 1 1.4167 -6.3997 0.0472 35 1 3.1506 -6.0070 0.1358 36 1 2.5020 -6.5731 -2.5543 37 1 1.8779 -10.4795 -3.9468 38 1 1.1762 -10.2755 -2.2534 39 1 2.5787 -10.6024 -0.3002 40 1 4.3589 -10.6916 -0.3643 41 1 2.3871 -12.8916 -1.1419 42 1 3.4852 -12.8937 0.2595 43 1 5.0545 -13.3486 -3.5268 44 1 3.2953 -13.1558 -3.3332 45 1 5.4237 -11.0007 -2.9346 46 1 4.2107 -11.0759 -4.2400 47 1 1.1057 -4.0637 0.8662 48 1 2.7973 -3.5419 0.6567 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035628790.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:03 Heat of formation + Delta-G solvation = -79.780146 kcal Electronic energy + Delta-G solvation = -27872.994976 eV Core-core repulsion = 23929.422288 eV Total energy + Delta-G solvation = -3943.572688 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.72760 -39.13733 -38.42128 -36.53824 -34.89371 -34.31250 -31.66578 -31.45397 -30.88338 -30.21933 -27.65328 -25.91714 -24.03488 -23.82011 -23.50874 -23.14150 -21.71335 -20.42503 -19.59032 -19.16579 -17.28863 -16.92941 -16.51023 -16.22692 -16.06237 -15.71531 -15.22586 -15.13044 -14.84140 -14.64612 -14.41442 -14.01884 -13.87445 -13.67243 -13.33302 -13.24301 -13.07765 -12.77098 -12.57096 -12.40292 -12.30083 -11.63173 -11.57653 -11.38445 -11.16247 -10.97997 -10.89962 -10.76385 -10.65402 -10.45280 -10.29062 -10.17141 -10.02595 -9.85989 -9.71122 -9.31648 -9.10728 -8.98805 -8.58691 -6.80550 -5.88596 -3.32630 2.44230 3.08707 3.31422 3.38470 3.39861 3.53841 3.62887 4.17545 4.28520 4.36858 4.39857 4.52150 4.59031 4.77020 4.86178 4.96188 5.09304 5.13413 5.17388 5.28732 5.32929 5.39033 5.42360 5.44121 5.46249 5.48440 5.63245 5.67718 5.75759 5.82035 5.86013 5.98371 6.01204 6.10396 6.21936 6.27826 6.32316 6.43887 6.53257 6.70681 6.97463 7.05533 7.46794 7.54701 7.66583 7.80597 8.25153 8.28916 9.06867 9.69415 10.26112 11.19524 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.035074 B = 0.002108 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.115906 B =13277.488120 C =13465.721416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.065 3.935 14 H 0.058 0.942 15 C 0.131 3.869 16 N -0.716 5.716 17 C 0.540 3.460 18 O -0.540 6.540 19 C -0.181 4.181 20 H 0.122 0.878 21 C -0.144 4.144 22 C -0.093 4.093 23 C -0.113 4.113 24 C 0.059 3.941 25 O -0.386 6.386 26 C 0.066 3.934 27 C -0.119 4.119 28 C 0.122 3.878 29 H 0.255 0.745 30 H 0.028 0.972 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.403 0.597 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.050 0.950 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.030 0.970 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.509 -22.012 -9.142 24.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.005 3.995 14 H 0.076 0.924 15 C 0.007 3.993 16 N -0.366 5.366 17 C 0.327 3.673 18 O -0.418 6.418 19 C -0.203 4.203 20 H 0.140 0.860 21 C -0.182 4.182 22 C -0.093 4.093 23 C -0.150 4.150 24 C -0.017 4.017 25 O -0.305 6.305 26 C -0.011 4.011 27 C -0.157 4.157 28 C -0.006 4.006 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.237 0.763 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.048 0.952 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.459 -22.394 -8.228 24.475 hybrid contribution 0.222 1.826 -0.658 1.953 sum 5.681 -20.569 -8.886 23.115 Atomic orbital electron populations 1.70033 1.05277 1.25717 1.53647 1.25059 0.95370 0.98528 1.00714 0.86227 0.79090 0.83349 0.77730 1.21363 1.21642 1.20348 1.19208 0.92656 0.84456 1.42203 0.91299 1.44072 1.33601 1.01005 1.53109 1.21448 0.89142 0.98336 0.89743 1.23324 0.99006 0.84882 0.96593 1.87789 1.41226 1.32592 1.69305 1.22800 0.87518 0.93862 0.95296 0.92396 1.21420 1.01562 0.87921 0.88403 1.45931 1.70792 1.09020 1.10836 1.19600 0.76249 0.82097 0.89385 1.90657 1.52147 1.74979 1.24060 1.22287 1.06906 0.91068 1.00001 0.85979 1.23099 0.93087 0.99729 1.02255 1.21437 0.97010 0.93682 0.97196 1.21999 1.05298 0.94793 0.92893 1.22763 0.90303 0.93315 0.95327 1.87863 1.49892 1.75050 1.17710 1.22542 1.01527 0.94212 0.82824 1.21859 0.99120 0.96015 0.98679 1.21443 0.98951 0.87223 0.92940 0.93456 0.95359 0.88745 0.90037 0.94120 0.90700 0.90148 0.76281 0.87808 0.88057 0.88146 0.90585 0.93369 0.88850 0.88901 0.93138 0.90358 0.90648 0.95224 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 11.14 55.49 0.62 -25.13 16 2 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 3 Si 0.91 21.25 29.59 -169.99 -5.03 16.22 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.26 -6.88 9.65 -15.06 -0.15 -7.03 16 8 H 0.07 1.81 7.88 -52.48 -0.41 1.40 16 9 N -0.59 -14.68 3.05 -171.83 -0.52 -15.21 16 10 C 0.14 3.26 5.45 -3.54 -0.02 3.24 16 11 C 0.04 0.75 6.99 37.31 0.26 1.01 16 12 O -0.39 -7.13 10.33 -35.23 -0.36 -7.50 16 13 C 0.07 1.11 2.81 -26.58 -0.07 1.04 16 14 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 15 C 0.13 1.93 5.34 -4.04 -0.02 1.91 16 16 N -0.72 -9.10 5.51 -60.29 -0.33 -9.43 16 17 C 0.54 6.98 7.60 -10.98 -0.08 6.90 16 18 O -0.54 -8.52 13.14 5.56 0.07 -8.45 16 19 C -0.18 -1.74 5.93 -91.89 -0.54 -2.29 16 20 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 21 C -0.14 -1.20 9.62 -26.86 -0.26 -1.46 16 22 C -0.09 -0.85 2.03 -154.53 -0.31 -1.17 16 23 C -0.11 -1.21 4.35 -26.39 -0.11 -1.32 16 24 C 0.06 0.55 6.84 37.33 0.26 0.81 16 25 O -0.39 -3.95 10.69 -35.23 -0.38 -4.33 16 26 C 0.07 0.49 6.84 37.33 0.26 0.75 16 27 C -0.12 -0.89 5.92 -26.43 -0.16 -1.04 16 28 C 0.12 2.50 6.02 -3.53 -0.02 2.48 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.09 2.43 6.14 -51.93 -0.32 2.11 16 32 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.40 4.48 8.47 -40.82 -0.35 4.13 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.10 1.24 6.06 -51.93 -0.31 0.93 16 40 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 47 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 LS Contribution 378.23 15.07 5.70 5.70 Total: -1.00 -31.40 378.23 -9.43 -40.83 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -8.12 Total: 3.51 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -1.07 Total: 3.79 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.24 Total: -49.77 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.67 Total: -20.27 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.40 -9.43 -40.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035628790.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.952 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds