Wall clock time and date at job start Fri Apr 10 2020 18:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99883 * 2 1 4 4 H 1.48497 * 109.47165 * 270.00569 * 3 2 1 5 5 H 1.48509 * 109.47048 * 30.00095 * 3 2 1 6 6 H 1.48495 * 109.47124 * 149.99708 * 3 2 1 7 7 C 1.38807 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00099 * 196.90372 * 7 2 1 9 9 N 1.36939 * 120.00271 * 16.90471 * 7 2 1 10 10 C 1.47145 * 120.97962 * 26.26468 * 9 7 2 11 11 C 1.53294 * 108.38763 * 129.44576 * 10 9 7 12 12 O 1.42963 * 109.22271 * 52.29632 * 11 10 9 13 13 C 1.42963 * 114.16609 * 297.42360 * 12 11 10 14 14 H 1.08997 * 109.55571 * 302.62573 * 13 12 11 15 15 C 1.53003 * 109.50862 * 182.50155 * 13 12 11 16 16 N 1.46504 * 109.46790 * 65.25510 * 15 13 12 17 17 C 1.34779 * 119.99523 * 179.97438 * 16 15 13 18 18 O 1.21282 * 120.00419 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99576 * 180.02562 * 17 16 15 20 20 H 1.08996 * 115.55441 * 34.30399 * 19 17 16 21 21 C 1.53066 * 117.50644 * 248.54344 * 19 17 16 22 22 C 1.52708 * 117.50242 * 180.02562 * 19 17 16 23 23 C 1.53319 * 117.87432 * 359.67347 * 22 19 17 24 24 C 1.53336 * 108.44573 * 163.77871 * 23 22 19 25 25 O 1.42878 * 109.33760 * 53.99766 * 24 23 22 26 26 C 1.42877 * 114.49497 * 295.58562 * 25 24 23 27 27 C 1.53248 * 117.86922 * 215.26336 * 22 19 17 28 28 C 1.47156 * 120.98121 * 206.24102 * 9 7 2 29 29 H 0.96995 * 120.00113 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.67820 * 249.16591 * 10 9 7 31 31 H 1.09002 * 109.68766 * 9.67969 * 10 9 7 32 32 H 1.08994 * 109.51482 * 172.22596 * 11 10 9 33 33 H 1.09004 * 109.51122 * 292.37883 * 11 10 9 34 34 H 1.08996 * 109.47456 * 305.25881 * 15 13 12 35 35 H 1.09000 * 109.46958 * 185.25357 * 15 13 12 36 36 H 0.96999 * 120.00583 * 359.97438 * 16 15 13 37 37 H 1.08997 * 117.50435 * 145.06481 * 21 19 17 38 38 H 1.09000 * 117.50413 * 0.02562 * 21 19 17 39 39 H 1.09002 * 109.67592 * 44.07501 * 23 22 19 40 40 H 1.09005 * 109.62521 * 283.45081 * 23 22 19 41 41 H 1.08999 * 109.49719 * 294.02934 * 24 23 22 42 42 H 1.09004 * 109.49360 * 173.95984 * 24 23 22 43 43 H 1.09003 * 109.49571 * 184.34378 * 26 25 24 44 44 H 1.08997 * 109.50158 * 304.40583 * 26 25 24 45 45 H 1.09000 * 109.63841 * 76.53804 * 27 22 19 46 46 H 1.09005 * 109.63826 * 315.93402 * 27 22 19 47 47 H 1.09002 * 109.67743 * 110.83593 * 28 9 7 48 48 H 1.08995 * 109.68417 * 350.28229 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2714 9 7 1.3700 -2.3623 -0.3459 10 6 0.1979 -2.3447 -1.2352 11 6 0.4256 -3.3659 -2.3556 12 8 0.7663 -4.6290 -1.7791 13 6 1.9823 -4.6203 -1.0274 14 1 2.8021 -4.2867 -1.6635 15 6 2.2756 -6.0314 -0.5138 16 7 2.5348 -6.9202 -1.6492 17 6 2.8188 -8.2204 -1.4360 18 8 2.8594 -8.6546 -0.3043 19 6 3.0860 -9.1345 -2.6039 20 1 3.5946 -8.6770 -3.4524 21 6 2.0506 -10.2218 -2.9019 22 6 3.4014 -10.5969 -2.2970 23 6 3.4318 -11.0304 -0.8267 24 6 3.3571 -12.5609 -0.7705 25 8 4.3932 -13.1153 -1.5832 26 6 4.2714 -12.8262 -2.9771 27 6 4.4134 -11.3153 -3.1961 28 6 1.8342 -3.6634 0.1610 29 1 -0.4850 0.8400 0.0004 30 1 -0.6953 -2.6122 -0.6706 31 1 0.0769 -1.3497 -1.6637 32 1 -0.4853 -3.4686 -2.9453 33 1 1.2392 -3.0272 -2.9971 34 1 1.4167 -6.3997 0.0472 35 1 3.1506 -6.0070 0.1358 36 1 2.5020 -6.5731 -2.5543 37 1 1.8779 -10.4795 -3.9468 38 1 1.1762 -10.2755 -2.2534 39 1 2.5787 -10.6024 -0.3002 40 1 4.3589 -10.6916 -0.3643 41 1 2.3871 -12.8916 -1.1419 42 1 3.4852 -12.8937 0.2595 43 1 5.0545 -13.3486 -3.5268 44 1 3.2953 -13.1558 -3.3332 45 1 5.4237 -11.0007 -2.9346 46 1 4.2107 -11.0759 -4.2400 47 1 1.1057 -4.0637 0.8662 48 1 2.7973 -3.5419 0.6567 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035628790.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:02 Heat of formation + Delta-G solvation = -101.197570 kcal Electronic energy + Delta-G solvation = -27873.923705 eV Core-core repulsion = 23929.422288 eV Total energy + Delta-G solvation = -3944.501417 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.58136 -40.34052 -39.62414 -37.34617 -36.47603 -35.73992 -33.40199 -32.45185 -32.10074 -31.08835 -29.29049 -27.46361 -25.19879 -24.76548 -24.54672 -24.22254 -23.10653 -21.73398 -20.92132 -19.90748 -18.90400 -18.15180 -17.60200 -17.29583 -16.94263 -16.90924 -16.69059 -16.19406 -15.96758 -15.85453 -15.63776 -15.48069 -15.07536 -14.81713 -14.73718 -14.57735 -14.23558 -14.06205 -13.66783 -13.26459 -13.21283 -13.03267 -12.99158 -12.70728 -12.55165 -12.34119 -12.18171 -12.09702 -12.06023 -11.89452 -11.63636 -11.37400 -11.30520 -10.87981 -10.82981 -10.74771 -10.56437 -10.12848 -10.07176 -8.78384 -7.93463 -5.41291 1.46027 1.46654 1.49782 1.56062 2.08976 2.46428 2.75277 2.78672 3.00036 3.21377 3.46161 3.55650 3.66401 3.81599 3.93808 3.94971 4.02577 4.09478 4.15198 4.24237 4.29631 4.46085 4.49808 4.52451 4.56273 4.59715 4.67081 4.69077 4.74016 4.78950 4.82867 4.85960 4.87607 4.99416 5.02965 5.04774 5.18564 5.21924 5.29835 5.34458 5.49269 5.53214 5.59054 6.23186 6.30648 6.32857 6.56454 7.03789 7.26079 7.71590 8.25135 9.12550 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.035074 B = 0.002108 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.115906 B =13277.488120 C =13465.721416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.973 3.027 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.267 4.267 8 H 0.073 0.927 9 N -0.613 5.613 10 C 0.142 3.858 11 C 0.054 3.946 12 O -0.389 6.389 13 C 0.081 3.919 14 H 0.070 0.930 15 C 0.142 3.858 16 N -0.709 5.709 17 C 0.535 3.465 18 O -0.575 6.575 19 C -0.186 4.186 20 H 0.149 0.851 21 C -0.129 4.129 22 C -0.100 4.100 23 C -0.109 4.109 24 C 0.063 3.937 25 O -0.407 6.407 26 C 0.059 3.941 27 C -0.113 4.113 28 C 0.116 3.884 29 H 0.252 0.748 30 H -0.002 1.002 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.414 0.586 37 H 0.134 0.866 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.102 0.898 47 H 0.016 0.984 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.618 -23.226 -11.632 26.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.800 3.200 4 H -0.208 1.208 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.396 4.396 8 H 0.090 0.910 9 N -0.338 5.338 10 C 0.016 3.984 11 C -0.023 4.023 12 O -0.308 6.308 13 C 0.021 3.979 14 H 0.087 0.913 15 C 0.018 3.982 16 N -0.361 5.361 17 C 0.323 3.677 18 O -0.455 6.455 19 C -0.206 4.206 20 H 0.167 0.833 21 C -0.166 4.166 22 C -0.101 4.101 23 C -0.147 4.147 24 C -0.014 4.014 25 O -0.327 6.327 26 C -0.018 4.018 27 C -0.150 4.150 28 C -0.010 4.010 29 H 0.061 0.939 30 H 0.016 0.984 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.250 0.750 37 H 0.152 0.848 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.112 0.888 43 H 0.128 0.872 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.120 0.880 47 H 0.034 0.966 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.586 -23.637 -10.746 26.788 hybrid contribution -0.134 2.155 0.201 2.168 sum 6.452 -21.482 -10.546 24.786 Atomic orbital electron populations 1.70191 1.06736 1.26116 1.55126 1.25851 0.96130 1.01693 1.00971 0.85188 0.77972 0.79057 0.77741 1.20777 1.22265 1.19303 1.19555 0.93015 0.85539 1.41521 0.90970 1.44356 1.33713 1.01882 1.53821 1.21327 0.87891 0.98488 0.90650 1.23158 1.00788 0.83560 0.94807 1.87805 1.41802 1.32018 1.69209 1.22624 0.87413 0.94186 0.93666 0.91258 1.21137 1.01151 0.86936 0.89003 1.45828 1.70649 1.08881 1.10693 1.20239 0.75262 0.82188 0.89998 1.90659 1.53514 1.75536 1.25828 1.22333 1.08315 0.90675 0.99323 0.83336 1.23195 0.91957 0.97863 1.03576 1.21509 0.98520 0.93564 0.96499 1.21846 1.02947 0.95835 0.94075 1.22726 0.90791 0.92168 0.95686 1.87836 1.50296 1.75223 1.19299 1.22784 1.02947 0.94507 0.81517 1.21862 0.97938 0.95609 0.99633 1.21604 0.98682 0.86352 0.94385 0.93897 0.98387 0.91371 0.87261 0.92995 0.92211 0.89716 0.75013 0.84752 0.89265 0.90284 0.93113 0.92173 0.88771 0.87224 0.91874 0.91263 0.87954 0.96574 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.72 11.14 21.65 0.24 -54.48 16 2 C -0.05 -2.80 4.95 84.86 0.42 -2.38 16 3 Si 0.97 43.93 29.59 68.60 2.03 45.95 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.27 -14.42 9.65 84.03 0.81 -13.61 16 8 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 9 N -0.61 -30.60 3.05 -697.56 -2.13 -32.73 16 10 C 0.14 6.78 5.45 86.35 0.47 7.25 16 11 C 0.05 1.96 6.99 72.08 0.50 2.47 16 12 O -0.39 -13.58 10.33 -148.98 -1.54 -15.12 16 13 C 0.08 2.65 2.81 30.69 0.09 2.73 16 14 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 15 C 0.14 4.08 5.34 86.38 0.46 4.54 16 16 N -0.71 -16.85 5.51 -463.04 -2.55 -19.40 16 17 C 0.53 13.23 7.60 87.66 0.67 13.90 16 18 O -0.57 -18.32 13.14 -3.04 -0.04 -18.36 16 19 C -0.19 -3.10 5.93 -11.61 -0.07 -3.17 16 20 H 0.15 1.70 8.14 -2.39 -0.02 1.68 16 21 C -0.13 -1.76 9.62 30.51 0.29 -1.47 16 22 C -0.10 -1.65 2.03 -52.20 -0.11 -1.76 16 23 C -0.11 -2.36 4.35 30.81 0.13 -2.23 16 24 C 0.06 1.13 6.84 72.09 0.49 1.63 16 25 O -0.41 -7.83 10.69 -148.98 -1.59 -9.43 16 26 C 0.06 0.72 6.84 72.09 0.49 1.22 16 27 C -0.11 -1.36 5.92 30.79 0.18 -1.17 16 28 C 0.12 4.78 6.02 86.35 0.52 5.30 16 29 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.07 3.60 6.14 -2.39 -0.01 3.58 16 32 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.41 8.07 8.47 -92.71 -0.79 7.28 16 37 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.08 2.03 6.06 -2.39 -0.01 2.02 16 40 H 0.05 1.31 8.10 -2.38 -0.02 1.29 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.10 0.70 8.08 -2.38 -0.02 0.68 16 47 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.07 2.78 7.96 -2.39 -0.02 2.76 16 Total: -1.00 -69.58 378.23 -0.06 -69.64 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.16 Total: 20.68 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 5.36 Total: 13.24 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -4.44 Total: -106.60 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -3.17 Total: -42.91 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -69.58 -0.06 -69.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035628790.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.558 kcal (2) G-P(sol) polarization free energy of solvation -69.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds