Wall clock time and date at job start Fri Apr 10 2020 18:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99940 * 2 1 4 4 H 1.48498 * 109.47043 * 240.00197 * 3 2 1 5 5 H 1.48507 * 109.47360 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47302 * 119.99784 * 3 2 1 7 7 C 1.38806 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00289 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.47656 * 120.00109 * 179.97438 * 9 7 2 11 11 C 1.52366 * 108.15337 * 276.82547 * 10 9 7 12 12 C 1.52557 * 112.59149 * 191.19340 * 11 10 9 13 13 H 1.10179 * 109.60483 * 170.79148 * 12 11 10 14 14 C 1.52562 * 111.18619 * 292.12197 * 12 11 10 15 15 C 1.51785 * 113.05792 * 68.10207 * 14 12 11 16 16 C 1.51712 * 114.67158 * 44.48044 * 15 14 12 17 17 C 1.52245 * 113.92244 * 317.28362 * 16 15 14 18 18 H 1.10169 * 109.80595 * 167.60910 * 17 16 15 19 19 C 1.52515 * 108.07726 * 154.99963 * 10 9 7 20 20 N 1.47267 * 108.91896 * 51.39869 * 12 11 10 21 21 C 1.34566 * 122.48191 * 120.52148 * 20 12 11 22 22 O 1.21275 * 119.99928 * 184.66720 * 21 20 12 23 23 C 1.50698 * 119.99995 * 4.67719 * 21 20 12 24 24 H 1.08995 * 109.58116 * 45.63301 * 23 21 20 25 25 C 1.53149 * 109.52096 * 285.47390 * 23 21 20 26 26 O 1.43071 * 109.20852 * 184.82026 * 25 23 21 27 27 C 1.43078 * 113.59097 * 57.91654 * 26 25 23 28 28 C 1.53144 * 109.15174 * 302.05172 * 27 26 25 29 29 O 1.43076 * 109.15189 * 55.31363 * 28 27 26 30 30 H 0.97005 * 119.99705 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99895 * 359.97438 * 9 7 2 32 32 H 1.08619 * 107.01761 * 36.09478 * 10 9 7 33 33 H 1.09637 * 109.06576 * 312.63256 * 11 10 9 34 34 H 1.09670 * 109.03363 * 69.85006 * 11 10 9 35 35 H 1.09802 * 109.05090 * 189.83549 * 14 12 11 36 36 H 1.09844 * 108.97755 * 306.49046 * 14 12 11 37 37 H 1.11192 * 107.22444 * 163.44713 * 15 14 12 38 38 H 1.08780 * 111.00978 * 277.39150 * 15 14 12 39 39 H 1.10036 * 108.97494 * 195.46391 * 16 15 14 40 40 H 1.09965 * 109.08227 * 79.36206 * 16 15 14 41 41 H 1.09436 * 109.27343 * 49.72986 * 19 10 9 42 42 H 1.09482 * 109.19287 * 291.59272 * 19 10 9 43 43 H 1.09004 * 109.52406 * 64.88523 * 25 23 21 44 44 H 1.08996 * 109.52402 * 304.75794 * 25 23 21 45 45 H 1.08999 * 109.52216 * 61.95434 * 27 26 25 46 46 H 1.09002 * 109.52209 * 182.15074 * 27 26 25 47 47 H 1.09004 * 109.52355 * 175.21342 * 28 27 26 48 48 H 1.09003 * 109.52383 * 295.41103 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7466 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0638 -3.6668 0.0005 11 6 2.4502 -3.9919 -1.4370 12 6 2.9759 -5.4153 -1.5950 13 1 3.0834 -5.6530 -2.6655 14 6 4.3205 -5.5873 -0.8950 15 6 4.2186 -5.5025 0.6170 16 6 3.0610 -6.2772 1.2182 17 6 1.7556 -6.1330 0.4482 18 1 1.0292 -6.8823 0.8013 19 6 1.1625 -4.7336 0.6133 20 7 2.0143 -6.3497 -0.9860 21 6 1.4147 -7.3289 -1.6878 22 8 0.5671 -8.0195 -1.1628 23 6 1.7965 -7.5675 -3.1260 24 1 2.8822 -7.5601 -3.2217 25 6 1.1977 -6.4648 -4.0041 26 8 1.4685 -6.7582 -5.3780 27 6 0.9594 -8.0256 -5.8040 28 6 1.5593 -9.1285 -4.9270 29 8 1.2884 -8.8351 -3.5531 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.9496 -3.5224 0.6124 33 1 1.5745 -3.8562 -2.0826 34 1 3.2196 -3.2845 -1.7693 35 1 4.7485 -6.5589 -1.1750 36 1 5.0119 -4.8131 -1.2543 37 1 5.1554 -5.9320 1.0347 38 1 4.2147 -4.4670 0.9502 39 1 2.9034 -5.9390 2.2534 40 1 3.3302 -7.3420 1.2717 41 1 0.1805 -4.6970 0.1316 42 1 1.0281 -4.5225 1.6791 43 1 1.6455 -5.5064 -3.7411 44 1 0.1202 -6.4188 -3.8469 45 1 -0.1263 -8.0333 -5.7071 46 1 1.2345 -8.1976 -6.8446 47 1 1.1116 -10.0869 -5.1900 48 1 2.6370 -9.1733 -5.0844 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039265159.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:12 Heat of formation + Delta-G solvation = -104.852002 kcal Electronic energy + Delta-G solvation = -29982.035784 eV Core-core repulsion = 26037.375899 eV Total energy + Delta-G solvation = -3944.659885 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.11461 -39.85605 -37.97834 -36.18017 -34.85657 -33.48434 -32.62381 -31.93912 -31.49945 -29.08858 -28.28357 -26.05942 -25.64756 -24.77012 -23.16068 -22.35607 -21.79117 -20.69634 -20.16040 -18.10960 -17.62682 -17.00878 -16.92215 -16.60007 -16.16920 -15.65075 -15.49327 -15.27314 -14.65141 -14.47674 -14.29017 -13.79234 -13.68804 -13.54179 -13.48759 -13.35354 -13.20724 -13.16223 -12.66259 -12.32544 -12.09108 -11.83495 -11.58937 -11.31027 -11.08695 -10.95599 -10.90020 -10.84515 -10.79999 -10.76365 -10.43285 -10.29098 -10.07086 -9.71295 -9.61551 -9.54989 -9.41356 -8.90365 -8.46948 -6.98603 -5.77842 -3.06852 2.50247 2.63802 3.41636 3.42911 3.46289 3.47664 3.63943 4.24991 4.34841 4.55697 4.59808 4.66716 4.70862 4.79809 4.83735 4.86103 4.93998 5.09485 5.15453 5.18486 5.27025 5.33045 5.39110 5.44217 5.47141 5.49162 5.55010 5.65227 5.69707 5.91080 5.91427 5.96729 6.05135 6.17547 6.22488 6.25038 6.33915 6.44647 6.50916 6.56934 6.65082 6.71997 6.90119 7.07615 7.50880 7.65665 8.17662 8.39480 9.51320 10.07247 10.43947 11.44616 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014764 B = 0.003861 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.036055 B = 7249.785667 C = 8152.342495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.177 3.823 11 C -0.139 4.139 12 C 0.132 3.868 13 H 0.084 0.916 14 C -0.120 4.120 15 C -0.115 4.115 16 C -0.118 4.118 17 C 0.150 3.850 18 H 0.096 0.904 19 C -0.129 4.129 20 N -0.593 5.593 21 C 0.530 3.470 22 O -0.525 6.525 23 C 0.041 3.959 24 H 0.090 0.910 25 C 0.033 3.967 26 O -0.371 6.371 27 C 0.019 3.981 28 C 0.024 3.976 29 O -0.352 6.352 30 H 0.255 0.745 31 H 0.382 0.618 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.118 0.882 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.569 -17.439 -7.186 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.371 5.371 10 C 0.068 3.932 11 C -0.180 4.180 12 C 0.028 3.972 13 H 0.102 0.898 14 C -0.158 4.158 15 C -0.152 4.152 16 C -0.157 4.157 17 C 0.047 3.953 18 H 0.114 0.886 19 C -0.168 4.168 20 N -0.328 5.328 21 C 0.316 3.684 22 O -0.401 6.401 23 C -0.020 4.020 24 H 0.108 0.892 25 C -0.044 4.044 26 O -0.290 6.290 27 C -0.058 4.058 28 C -0.053 4.053 29 O -0.270 6.270 30 H 0.065 0.935 31 H 0.216 0.784 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.136 0.864 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.125 0.875 47 H 0.127 0.873 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.205 -17.674 -6.894 20.293 hybrid contribution 0.231 1.000 -0.197 1.046 sum 7.436 -16.674 -7.092 19.586 Atomic orbital electron populations 1.69653 1.05110 1.25736 1.57566 1.24724 0.95455 0.97601 1.03072 0.86315 0.78550 0.83787 0.77796 1.21321 1.21753 1.21312 1.19165 0.90865 0.84141 1.42827 0.91313 1.42889 1.05691 0.99692 1.88875 1.20238 0.94693 0.85952 0.92322 1.22513 1.01679 0.92268 1.01575 1.21661 0.88313 0.90631 0.96555 0.89810 1.21582 0.96268 1.02058 0.95900 1.21140 0.97512 1.01864 0.94703 1.21504 0.94310 1.00319 0.99524 1.21292 0.96743 0.98089 0.79177 0.88570 1.22071 0.99829 0.92867 1.02034 1.48286 1.43418 1.30471 1.10602 1.19607 0.81703 0.80291 0.86776 1.90702 1.31345 1.47285 1.70761 1.22564 0.99434 0.86680 0.93370 0.89196 1.23304 1.01676 0.98042 0.81426 1.88142 1.79295 1.36070 1.25454 1.23316 0.99068 0.83963 0.99415 1.23338 1.00814 0.99300 0.81869 1.88209 1.79140 1.33888 1.25801 0.93480 0.78433 0.92171 0.91920 0.90863 0.92515 0.90646 0.93114 0.90413 0.90687 0.92434 0.91737 0.90810 0.86403 0.91121 0.91766 0.87487 0.87266 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.69 13.06 55.49 0.72 -26.96 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.90 21.85 29.55 -169.99 -5.02 16.82 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.31 9.86 -15.06 -0.15 -6.46 16 8 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 9 N -0.73 -17.36 5.08 -53.37 -0.27 -17.63 16 10 C 0.18 3.19 2.30 -67.87 -0.16 3.04 16 11 C -0.14 -2.21 4.89 -27.28 -0.13 -2.34 16 12 C 0.13 1.65 2.48 -67.96 -0.17 1.48 16 13 H 0.08 0.91 4.66 -51.26 -0.24 0.67 16 14 C -0.12 -1.31 5.45 -27.57 -0.15 -1.46 16 15 C -0.11 -1.31 4.85 -28.00 -0.14 -1.44 16 16 C -0.12 -1.41 5.39 -27.77 -0.15 -1.56 16 17 C 0.15 2.11 3.21 -67.91 -0.22 1.90 16 18 H 0.10 1.45 7.21 -51.26 -0.37 1.08 16 19 C -0.13 -2.10 4.94 -27.04 -0.13 -2.23 16 20 N -0.59 -8.23 2.51 -157.48 -0.39 -8.62 16 21 C 0.53 8.11 7.07 -11.08 -0.08 8.03 16 22 O -0.53 -9.95 16.12 -13.85 -0.22 -10.17 16 23 C 0.04 0.52 2.40 -27.81 -0.07 0.46 16 24 H 0.09 0.98 7.36 -51.93 -0.38 0.60 16 25 C 0.03 0.40 6.01 37.23 0.22 0.63 16 26 O -0.37 -4.38 10.85 -48.80 -0.53 -4.91 16 27 C 0.02 0.17 7.05 37.23 0.26 0.44 16 28 C 0.02 0.22 7.05 37.23 0.26 0.48 16 29 O -0.35 -4.74 10.07 -62.31 -0.63 -5.37 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 31 H 0.38 9.92 7.70 -40.82 -0.31 9.60 16 32 H 0.06 1.10 5.21 -52.14 -0.27 0.82 16 33 H 0.06 1.09 7.97 -51.57 -0.41 0.68 16 34 H 0.07 1.20 8.20 -51.55 -0.42 0.78 16 35 H 0.06 0.56 8.21 -51.47 -0.42 0.14 16 36 H 0.07 0.77 8.21 -51.45 -0.42 0.34 16 37 H 0.05 0.50 8.31 -50.67 -0.42 0.08 16 38 H 0.08 0.98 5.80 -52.05 -0.30 0.68 16 39 H 0.07 0.83 8.22 -51.34 -0.42 0.41 16 40 H 0.06 0.65 8.22 -51.38 -0.42 0.23 16 41 H 0.06 1.15 8.10 -51.68 -0.42 0.73 16 42 H 0.07 1.19 8.18 -51.66 -0.42 0.76 16 43 H 0.12 1.39 5.83 -51.93 -0.30 1.09 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 361.27 15.07 5.44 5.44 Total: -1.00 -32.65 361.27 -9.41 -42.06 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -7.63 Total: 8.84 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -0.89 Total: 0.50 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.06 Total: -53.22 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -1.38 Total: -20.46 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.65 -9.41 -42.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039265159.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.791 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds