Wall clock time and date at job start Fri Apr 10 2020 18:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99940 * 2 1 4 4 H 1.48498 * 109.47043 * 240.00197 * 3 2 1 5 5 H 1.48507 * 109.47360 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47302 * 119.99784 * 3 2 1 7 7 C 1.38806 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00289 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.47656 * 120.00109 * 179.97438 * 9 7 2 11 11 C 1.52366 * 108.15337 * 276.82547 * 10 9 7 12 12 C 1.52557 * 112.59149 * 191.19340 * 11 10 9 13 13 H 1.10179 * 109.60483 * 170.79148 * 12 11 10 14 14 C 1.52562 * 111.18619 * 292.12197 * 12 11 10 15 15 C 1.51785 * 113.05792 * 68.10207 * 14 12 11 16 16 C 1.51712 * 114.67158 * 44.48044 * 15 14 12 17 17 C 1.52245 * 113.92244 * 317.28362 * 16 15 14 18 18 H 1.10169 * 109.80595 * 167.60910 * 17 16 15 19 19 C 1.52515 * 108.07726 * 154.99963 * 10 9 7 20 20 N 1.47267 * 108.91896 * 51.39869 * 12 11 10 21 21 C 1.34566 * 122.48191 * 120.52148 * 20 12 11 22 22 O 1.21275 * 119.99928 * 184.66720 * 21 20 12 23 23 C 1.50698 * 119.99995 * 4.67719 * 21 20 12 24 24 H 1.08995 * 109.58116 * 45.63301 * 23 21 20 25 25 C 1.53149 * 109.52096 * 285.47390 * 23 21 20 26 26 O 1.43071 * 109.20852 * 184.82026 * 25 23 21 27 27 C 1.43078 * 113.59097 * 57.91654 * 26 25 23 28 28 C 1.53144 * 109.15174 * 302.05172 * 27 26 25 29 29 O 1.43076 * 109.15189 * 55.31363 * 28 27 26 30 30 H 0.97005 * 119.99705 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99895 * 359.97438 * 9 7 2 32 32 H 1.08619 * 107.01761 * 36.09478 * 10 9 7 33 33 H 1.09637 * 109.06576 * 312.63256 * 11 10 9 34 34 H 1.09670 * 109.03363 * 69.85006 * 11 10 9 35 35 H 1.09802 * 109.05090 * 189.83549 * 14 12 11 36 36 H 1.09844 * 108.97755 * 306.49046 * 14 12 11 37 37 H 1.11192 * 107.22444 * 163.44713 * 15 14 12 38 38 H 1.08780 * 111.00978 * 277.39150 * 15 14 12 39 39 H 1.10036 * 108.97494 * 195.46391 * 16 15 14 40 40 H 1.09965 * 109.08227 * 79.36206 * 16 15 14 41 41 H 1.09436 * 109.27343 * 49.72986 * 19 10 9 42 42 H 1.09482 * 109.19287 * 291.59272 * 19 10 9 43 43 H 1.09004 * 109.52406 * 64.88523 * 25 23 21 44 44 H 1.08996 * 109.52402 * 304.75794 * 25 23 21 45 45 H 1.08999 * 109.52216 * 61.95434 * 27 26 25 46 46 H 1.09002 * 109.52209 * 182.15074 * 27 26 25 47 47 H 1.09004 * 109.52355 * 175.21342 * 28 27 26 48 48 H 1.09003 * 109.52383 * 295.41103 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7466 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0638 -3.6668 0.0005 11 6 2.4502 -3.9919 -1.4370 12 6 2.9759 -5.4153 -1.5950 13 1 3.0834 -5.6530 -2.6655 14 6 4.3205 -5.5873 -0.8950 15 6 4.2186 -5.5025 0.6170 16 6 3.0610 -6.2772 1.2182 17 6 1.7556 -6.1330 0.4482 18 1 1.0292 -6.8823 0.8013 19 6 1.1625 -4.7336 0.6133 20 7 2.0143 -6.3497 -0.9860 21 6 1.4147 -7.3289 -1.6878 22 8 0.5671 -8.0195 -1.1628 23 6 1.7965 -7.5675 -3.1260 24 1 2.8822 -7.5601 -3.2217 25 6 1.1977 -6.4648 -4.0041 26 8 1.4685 -6.7582 -5.3780 27 6 0.9594 -8.0256 -5.8040 28 6 1.5593 -9.1285 -4.9270 29 8 1.2884 -8.8351 -3.5531 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.9496 -3.5224 0.6124 33 1 1.5745 -3.8562 -2.0826 34 1 3.2196 -3.2845 -1.7693 35 1 4.7485 -6.5589 -1.1750 36 1 5.0119 -4.8131 -1.2543 37 1 5.1554 -5.9320 1.0347 38 1 4.2147 -4.4670 0.9502 39 1 2.9034 -5.9390 2.2534 40 1 3.3302 -7.3420 1.2717 41 1 0.1805 -4.6970 0.1316 42 1 1.0281 -4.5225 1.6791 43 1 1.6455 -5.5064 -3.7411 44 1 0.1202 -6.4188 -3.8469 45 1 -0.1263 -8.0333 -5.7071 46 1 1.2345 -8.1976 -6.8446 47 1 1.1116 -10.0869 -5.1900 48 1 2.6370 -9.1733 -5.0844 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039265159.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:11 Heat of formation + Delta-G solvation = -126.388660 kcal Electronic energy + Delta-G solvation = -29982.969684 eV Core-core repulsion = 26037.375899 eV Total energy + Delta-G solvation = -3945.593785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.22457 -40.82725 -39.19611 -37.10372 -36.53012 -34.58812 -33.80296 -33.62099 -32.42210 -30.73544 -29.23003 -27.24131 -26.88125 -25.90218 -24.85470 -23.32192 -22.83865 -21.78728 -21.46329 -19.47064 -19.03851 -18.15252 -17.86173 -17.82919 -17.04844 -16.79641 -16.67731 -16.50235 -15.89315 -15.70821 -15.51449 -15.24759 -14.85767 -14.77602 -14.62435 -14.51347 -14.49708 -14.16928 -13.99851 -13.52709 -13.27466 -12.88840 -12.78649 -12.71751 -12.64340 -12.45265 -12.22623 -11.95228 -11.93873 -11.93379 -11.79964 -11.72149 -11.52999 -11.15817 -10.99284 -10.79023 -10.66621 -10.33237 -9.65833 -8.97116 -7.89052 -5.17200 1.35286 1.49940 1.52219 1.56209 1.58033 2.58255 2.59450 2.71794 3.28597 3.38649 3.43823 3.61344 3.72179 3.77102 3.84147 3.92169 3.97032 3.99699 4.08252 4.10512 4.18867 4.26260 4.32825 4.39822 4.41025 4.47010 4.53379 4.65646 4.73742 4.76588 4.78276 4.90188 4.96453 5.04998 5.06966 5.07842 5.15843 5.24960 5.34506 5.42844 5.56174 5.56918 5.70823 5.81293 5.85343 6.31202 6.36952 7.00104 7.37963 8.12312 8.37295 9.34664 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014764 B = 0.003861 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.036055 B = 7249.785667 C = 8152.342495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.079 4.079 3 Si 0.968 3.032 4 H -0.277 1.277 5 H -0.303 1.303 6 H -0.278 1.278 7 C -0.229 4.229 8 H 0.081 0.919 9 N -0.745 5.745 10 C 0.178 3.822 11 C -0.130 4.130 12 C 0.137 3.863 13 H 0.108 0.892 14 C -0.120 4.120 15 C -0.118 4.118 16 C -0.115 4.115 17 C 0.153 3.847 18 H 0.084 0.916 19 C -0.120 4.120 20 N -0.590 5.590 21 C 0.525 3.475 22 O -0.570 6.570 23 C 0.049 3.951 24 H 0.117 0.883 25 C 0.038 3.962 26 O -0.380 6.380 27 C 0.013 3.987 28 C 0.020 3.980 29 O -0.382 6.382 30 H 0.247 0.753 31 H 0.366 0.634 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.120 0.880 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.139 0.861 47 H 0.131 0.869 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.710 -18.706 -8.257 23.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.271 4.271 3 Si 0.798 3.202 4 H -0.203 1.203 5 H -0.229 1.229 6 H -0.204 1.204 7 C -0.361 4.361 8 H 0.099 0.901 9 N -0.385 5.385 10 C 0.071 3.929 11 C -0.171 4.171 12 C 0.034 3.966 13 H 0.126 0.874 14 C -0.158 4.158 15 C -0.156 4.156 16 C -0.153 4.153 17 C 0.050 3.950 18 H 0.102 0.898 19 C -0.159 4.159 20 N -0.322 5.322 21 C 0.313 3.687 22 O -0.449 6.449 23 C -0.013 4.013 24 H 0.134 0.866 25 C -0.039 4.039 26 O -0.299 6.299 27 C -0.063 4.063 28 C -0.056 4.056 29 O -0.301 6.301 30 H 0.056 0.944 31 H 0.197 0.803 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.138 0.862 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.157 0.843 47 H 0.149 0.851 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.418 -18.972 -7.981 23.069 hybrid contribution -0.771 1.287 0.111 1.504 sum 9.647 -17.685 -7.870 21.628 Atomic orbital electron populations 1.69830 1.06761 1.25782 1.60205 1.25510 0.96188 1.00978 1.04399 0.85285 0.77152 0.79541 0.78250 1.20264 1.22939 1.20368 1.19601 0.91516 0.84979 1.40008 0.90073 1.43166 1.05193 1.01198 1.88903 1.20476 0.94412 0.84072 0.93978 1.22306 1.00847 0.94862 0.99062 1.21725 0.88736 0.87803 0.98328 0.87425 1.21614 0.94966 1.03938 0.95257 1.21144 0.98178 1.00994 0.95237 1.21479 0.93005 1.01348 0.99440 1.21219 0.97984 0.95784 0.80049 0.89811 1.21959 0.98457 0.94099 1.01420 1.48348 1.43211 1.30250 1.10434 1.20161 0.80871 0.79828 0.87827 1.90675 1.33246 1.49053 1.71903 1.22515 1.00669 0.86802 0.91273 0.86585 1.23168 1.00518 0.98124 0.82128 1.88127 1.79440 1.37635 1.24705 1.23574 0.98814 0.82831 1.01078 1.23628 1.02197 1.00141 0.79670 1.88175 1.79731 1.33911 1.28298 0.94382 0.80303 0.91472 0.94094 0.90948 0.90237 0.89182 0.90649 0.91882 0.90007 0.91206 0.94243 0.91030 0.86182 0.93090 0.92422 0.84345 0.85113 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.60 13.06 21.65 0.28 -59.32 16 2 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 3 Si 0.97 45.17 29.55 68.60 2.03 47.20 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.23 -12.12 9.86 84.03 0.83 -11.30 16 8 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -36.14 5.08 -322.76 -1.64 -37.78 16 10 C 0.18 6.40 2.30 44.40 0.10 6.50 16 11 C -0.13 -4.03 4.89 30.24 0.15 -3.88 16 12 C 0.14 3.12 2.48 44.55 0.11 3.23 16 13 H 0.11 2.01 4.66 -1.76 -0.01 2.00 16 14 C -0.12 -2.16 5.45 30.05 0.16 -2.00 16 15 C -0.12 -2.31 4.85 29.77 0.14 -2.17 16 16 C -0.11 -2.48 5.39 29.92 0.16 -2.32 16 17 C 0.15 4.26 3.21 44.54 0.14 4.40 16 18 H 0.08 2.58 7.21 -1.76 -0.01 2.56 16 19 C -0.12 -4.01 4.94 30.39 0.15 -3.86 16 20 N -0.59 -15.75 2.51 -770.66 -1.93 -17.68 16 21 C 0.53 15.80 7.07 87.69 0.62 16.42 16 22 O -0.57 -21.97 16.12 15.54 0.25 -21.72 16 23 C 0.05 1.16 2.40 29.90 0.07 1.23 16 24 H 0.12 2.14 7.36 -2.39 -0.02 2.12 16 25 C 0.04 0.91 6.01 72.03 0.43 1.34 16 26 O -0.38 -8.29 10.85 -136.01 -1.48 -9.77 16 27 C 0.01 0.21 7.05 72.03 0.51 0.72 16 28 C 0.02 0.30 7.05 72.03 0.51 0.81 16 29 O -0.38 -9.75 10.07 -123.09 -1.24 -10.99 16 30 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 31 H 0.37 19.84 7.70 -92.71 -0.71 19.12 16 32 H 0.07 2.37 5.21 -2.59 -0.01 2.36 16 33 H 0.04 1.44 7.97 -2.05 -0.02 1.42 16 34 H 0.07 2.26 8.20 -2.03 -0.02 2.25 16 35 H 0.08 1.16 8.21 -1.96 -0.02 1.14 16 36 H 0.09 1.44 8.21 -1.94 -0.02 1.42 16 37 H 0.07 1.17 8.31 -1.20 -0.01 1.16 16 38 H 0.06 1.43 5.80 -2.50 -0.01 1.41 16 39 H 0.08 1.67 8.22 -1.83 -0.02 1.65 16 40 H 0.07 1.39 8.22 -1.87 -0.02 1.37 16 41 H 0.04 1.49 8.10 -2.16 -0.02 1.47 16 42 H 0.07 2.38 8.18 -2.13 -0.02 2.36 16 43 H 0.12 2.71 5.83 -2.38 -0.01 2.70 16 44 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.14 1.28 8.14 -2.39 -0.02 1.27 16 47 H 0.13 1.41 8.14 -2.38 -0.02 1.39 16 48 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -72.63 361.27 1.13 -71.50 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: 0.30 Total: 33.41 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 4.56 Total: 5.16 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -3.29 Total: -114.78 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -2.46 Total: -42.48 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -72.63 1.13 -71.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039265159.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.890 kcal (2) G-P(sol) polarization free energy of solvation -72.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds