Wall clock time and date at job start Fri Apr 10 2020 18:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00443 * 2 1 4 4 H 1.48501 * 109.47368 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46795 * 299.99925 * 3 2 1 6 6 H 1.48498 * 109.47228 * 59.99894 * 3 2 1 7 7 C 1.38817 * 119.99490 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99931 * 191.06128 * 7 2 1 9 9 N 1.36935 * 120.00457 * 11.06212 * 7 2 1 10 10 C 1.44775 * 120.03440 * 202.76215 * 9 7 2 11 11 C 1.51432 * 112.63800 * 264.18935 * 10 9 7 12 12 C 1.51746 * 112.77252 * 286.01128 * 11 10 9 13 13 H 1.09007 * 112.09210 * 187.27583 * 12 11 10 14 14 C 1.55214 * 103.55264 * 308.34393 * 12 11 10 15 15 C 1.53955 * 105.23351 * 98.14475 * 14 12 11 16 16 C 1.49965 * 105.33237 * 359.65485 * 15 14 12 17 17 H 1.09000 * 105.70784 * 129.26684 * 16 15 14 18 18 C 1.50412 * 120.02791 * 22.77779 * 9 7 2 19 19 N 1.48039 * 108.65344 * 62.38654 * 12 11 10 20 20 C 1.34780 * 127.78429 * 95.60256 * 19 12 11 21 21 O 1.21277 * 119.99592 * 0.02562 * 20 19 12 22 22 C 1.50700 * 119.99940 * 180.02562 * 20 19 12 23 23 C 1.53001 * 109.46917 * 180.02562 * 22 20 19 24 24 O 1.42966 * 109.47099 * 294.99856 * 23 22 20 25 25 C 1.43087 * 113.77041 * 181.20953 * 24 23 22 26 26 C 1.53260 * 108.94659 * 57.97048 * 25 24 23 27 27 C 1.53261 * 108.83906 * 305.47553 * 26 25 24 28 28 O 1.42968 * 109.46965 * 175.00107 * 23 22 20 29 29 H 0.96996 * 120.00105 * 0.02562 * 1 2 3 30 30 H 1.08991 * 108.85308 * 143.37017 * 10 9 7 31 31 H 1.09001 * 108.84627 * 24.99417 * 10 9 7 32 32 H 1.09004 * 108.81766 * 165.16666 * 11 10 9 33 33 H 1.08989 * 108.74043 * 46.80785 * 11 10 9 34 34 H 1.09000 * 110.28798 * 339.20831 * 14 12 11 35 35 H 1.09001 * 110.29650 * 217.08321 * 14 12 11 36 36 H 1.08997 * 110.29084 * 118.64500 * 15 14 12 37 37 H 1.09001 * 110.29129 * 240.66135 * 15 14 12 38 38 H 1.09007 * 109.52211 * 270.48331 * 18 9 7 39 39 H 1.09001 * 109.52592 * 30.60872 * 18 9 7 40 40 H 1.08997 * 109.47111 * 299.99868 * 22 20 19 41 41 H 1.09004 * 109.47106 * 60.00000 * 22 20 19 42 42 H 1.08996 * 109.47476 * 54.99774 * 23 22 20 43 43 H 1.09000 * 109.55534 * 298.12781 * 25 24 23 44 44 H 1.09005 * 109.56097 * 177.81130 * 25 24 23 45 45 H 1.08998 * 109.57602 * 185.66939 * 26 25 24 46 46 H 1.08996 * 109.57511 * 65.28306 * 26 25 24 47 47 H 1.08992 * 109.56368 * 294.68246 * 27 26 25 48 48 H 1.09007 * 109.55793 * 174.36289 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0751 -1.2111 0.1789 9 7 1.3445 -2.3770 -0.2286 10 6 1.9033 -3.6287 0.2373 11 6 2.6919 -4.3501 -0.8355 12 6 1.8043 -4.9877 -1.8883 13 1 2.3719 -5.6085 -2.5817 14 6 0.7909 -5.8175 -1.0556 15 6 -0.4688 -4.9378 -0.9580 16 6 -0.1337 -3.6812 -1.7047 17 1 -0.9563 -3.5242 -2.4023 18 6 0.0323 -2.3682 -0.9637 19 7 1.0449 -3.9199 -2.5772 20 6 1.3537 -3.3019 -3.7345 21 8 2.3608 -3.6096 -4.3361 22 6 0.4477 -2.2288 -4.2809 23 6 1.0232 -1.6955 -5.5944 24 8 2.2698 -1.0439 -5.3388 25 6 2.8781 -0.4841 -6.5066 26 6 1.9077 0.5180 -7.1414 27 6 0.5688 -0.1831 -7.3962 28 8 0.1071 -0.7620 -6.1718 29 1 -0.4850 0.8400 -0.0004 30 1 1.0912 -4.2742 0.5715 31 1 2.5613 -3.4276 1.0826 32 1 3.2947 -5.1275 -0.3660 33 1 3.3566 -3.6360 -1.3214 34 1 1.1913 -6.0159 -0.0615 35 1 0.5598 -6.7533 -1.5647 36 1 -1.3171 -5.4393 -1.4237 37 1 -0.6909 -4.7101 0.0846 38 1 -0.7837 -2.2480 -0.2509 39 1 0.0189 -1.5427 -1.6753 40 1 -0.5426 -2.6468 -4.4617 41 1 0.3724 -1.4149 -3.5597 42 1 1.1811 -2.5240 -6.2848 43 1 3.0999 -1.2787 -7.2190 44 1 3.8001 0.0267 -6.2287 45 1 2.3181 0.8758 -8.0857 46 1 1.7566 1.3589 -6.4647 47 1 0.7031 -0.9662 -8.1423 48 1 -0.1610 0.5431 -7.7545 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039365071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:15 Heat of formation + Delta-G solvation = -105.961223 kcal Electronic energy + Delta-G solvation = -30564.111209 eV Core-core repulsion = 26619.403225 eV Total energy + Delta-G solvation = -3944.707985 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.81529 -40.93843 -39.21198 -36.73722 -36.36104 -34.66501 -33.97692 -32.88794 -32.60496 -30.97722 -28.72926 -27.12826 -26.96543 -25.72731 -25.16629 -22.83772 -22.42927 -22.11745 -20.71411 -19.70880 -19.01569 -18.41403 -17.86182 -17.39592 -17.33527 -16.91692 -16.67843 -16.10687 -15.90545 -15.75539 -15.59906 -15.30731 -14.82558 -14.65518 -14.40820 -14.33416 -14.03351 -13.87263 -13.56875 -13.37394 -13.20913 -13.02608 -12.80017 -12.64414 -12.48165 -12.32838 -12.31981 -12.14343 -12.10825 -11.99534 -11.73171 -11.59577 -11.46082 -11.06103 -10.93830 -10.84455 -10.70678 -10.57395 -9.50860 -8.68000 -7.83965 -5.23166 1.38122 1.42252 1.49538 1.59299 1.90986 2.49238 2.62945 2.66035 3.29363 3.44965 3.60885 3.68915 3.72801 3.74305 3.78342 3.85226 4.04195 4.12697 4.18378 4.23761 4.30573 4.35427 4.37095 4.39424 4.51425 4.62571 4.68332 4.72744 4.76569 4.78957 4.85040 4.95952 5.04940 5.06290 5.12804 5.15169 5.22952 5.31442 5.44612 5.55125 5.59280 5.73081 5.75612 5.84445 6.14389 6.36827 6.66187 7.17274 7.19119 7.91945 8.37707 9.21749 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.009840 B = 0.006281 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.896921 B = 4456.754936 C = 6226.450859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.043 4.043 3 Si 0.949 3.051 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.285 1.285 7 C -0.248 4.248 8 H 0.050 0.950 9 N -0.607 5.607 10 C 0.149 3.851 11 C -0.148 4.148 12 C 0.130 3.870 13 H 0.088 0.912 14 C -0.114 4.114 15 C -0.108 4.108 16 C 0.111 3.889 17 H 0.065 0.935 18 C 0.190 3.810 19 N -0.598 5.598 20 C 0.546 3.454 21 O -0.580 6.580 22 C -0.122 4.122 23 C 0.273 3.727 24 O -0.413 6.413 25 C 0.045 3.955 26 C -0.187 4.187 27 C 0.049 3.951 28 O -0.412 6.412 29 H 0.247 0.753 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.089 0.911 33 H 0.011 0.989 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.031 0.969 39 H 0.035 0.965 40 H 0.136 0.864 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.119 0.881 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.645 -9.354 -11.349 14.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.238 4.238 3 Si 0.779 3.221 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.212 1.212 7 C -0.379 4.379 8 H 0.068 0.932 9 N -0.331 5.331 10 C 0.023 3.977 11 C -0.189 4.189 12 C 0.027 3.973 13 H 0.106 0.894 14 C -0.152 4.152 15 C -0.146 4.146 16 C 0.008 3.992 17 H 0.083 0.917 18 C 0.066 3.934 19 N -0.330 5.330 20 C 0.336 3.664 21 O -0.462 6.462 22 C -0.161 4.161 23 C 0.178 3.822 24 O -0.334 6.334 25 C -0.031 4.031 26 C -0.224 4.224 27 C -0.026 4.026 28 O -0.333 6.333 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.107 0.893 33 H 0.030 0.970 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.154 0.846 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.117 0.883 45 H 0.138 0.862 46 H 0.083 0.917 47 H 0.091 0.909 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.299 -9.276 -11.477 14.935 hybrid contribution 0.958 1.742 -0.201 1.998 sum -1.341 -7.534 -11.678 13.962 Atomic orbital electron populations 1.70077 1.05545 1.25081 1.57006 1.25417 0.96201 1.00048 1.02158 0.85468 0.78309 0.81559 0.76763 1.20475 1.22385 1.21212 1.19346 0.90827 0.86108 1.41647 0.93244 1.44494 1.22376 1.01800 1.64425 1.20337 0.96492 0.87290 0.93618 1.22176 0.98950 0.99526 0.98284 1.21891 0.94343 0.88514 0.92523 0.89435 1.22734 0.93634 0.97936 1.00902 1.21537 0.99028 0.92598 1.01451 1.21690 0.86902 0.97044 0.93604 0.91663 1.21246 0.86877 0.92099 0.93213 1.49002 1.26222 1.37450 1.20304 1.19762 0.85577 0.81418 0.79657 1.90619 1.28441 1.66427 1.60665 1.21452 1.00431 0.97817 0.96426 1.22744 0.77995 0.88028 0.93476 1.88235 1.36075 1.74366 1.34756 1.22883 0.96672 0.96230 0.87297 1.22782 0.96943 0.99097 1.03620 1.22972 0.96583 0.98084 0.84979 1.88049 1.44157 1.60738 1.40384 0.94302 0.91368 0.94861 0.89259 0.96966 0.88416 0.88802 0.87835 0.89712 0.95065 0.94698 0.84605 0.89520 0.91455 0.91617 0.88293 0.86227 0.91709 0.90858 0.86108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.34 10.63 21.65 0.23 -54.11 16 2 C -0.04 -2.48 5.14 84.86 0.44 -2.05 16 3 Si 0.95 47.86 29.57 68.60 2.03 49.88 16 4 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 5 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 6 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 7 C -0.25 -14.20 9.62 84.03 0.81 -13.39 16 8 H 0.05 2.91 7.85 -2.91 -0.02 2.88 16 9 N -0.61 -30.06 2.93 -701.39 -2.05 -32.11 16 10 C 0.15 5.94 5.24 86.19 0.45 6.39 16 11 C -0.15 -5.33 4.95 29.67 0.15 -5.18 16 12 C 0.13 4.14 4.00 45.04 0.18 4.32 16 13 H 0.09 2.76 8.09 -2.38 -0.02 2.74 16 14 C -0.11 -2.53 5.93 31.68 0.19 -2.34 16 15 C -0.11 -2.63 5.81 29.94 0.17 -2.45 16 16 C 0.11 3.75 2.02 43.18 0.09 3.84 16 17 H 0.07 1.99 7.34 -2.39 -0.02 1.97 16 18 C 0.19 8.67 4.55 85.18 0.39 9.06 16 19 N -0.60 -21.93 2.57 -771.25 -1.99 -23.92 16 20 C 0.55 22.27 7.74 87.66 0.68 22.95 16 21 O -0.58 -26.64 15.82 10.76 0.17 -26.47 16 22 C -0.12 -4.52 4.76 29.85 0.14 -4.38 16 23 C 0.27 9.64 2.80 71.98 0.20 9.84 16 24 O -0.41 -16.57 9.77 -120.75 -1.18 -17.75 16 25 C 0.05 1.29 6.96 72.07 0.50 1.79 16 26 C -0.19 -4.21 6.35 30.77 0.20 -4.02 16 27 C 0.05 1.10 6.96 72.07 0.50 1.61 16 28 O -0.41 -13.20 10.54 -126.22 -1.33 -14.53 16 29 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 30 H 0.07 2.31 4.23 -2.39 -0.01 2.30 16 31 H 0.03 1.38 7.95 -2.39 -0.02 1.36 16 32 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 33 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.10 1.93 6.56 -2.39 -0.02 1.92 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 36 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 2.11 7.12 -2.39 -0.02 2.09 16 38 H 0.03 1.54 7.66 -2.38 -0.02 1.52 16 39 H 0.03 1.83 5.20 -2.39 -0.01 1.82 16 40 H 0.14 4.05 7.85 -2.39 -0.02 4.04 16 41 H 0.09 3.84 6.40 -2.39 -0.02 3.83 16 42 H 0.07 2.23 7.96 -2.39 -0.02 2.21 16 43 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 45 H 0.12 1.76 8.14 -2.39 -0.02 1.75 16 46 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -76.23 359.92 1.91 -74.32 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.95 Total: 18.69 kcal Atomic # 6 Polarization: 20.90 SS G_CDS: 5.08 Total: 25.98 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -3.81 Total: -110.13 kcal Atomic # 8 Polarization: -56.40 SS G_CDS: -2.34 Total: -58.74 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.88 kcal Total: -76.23 1.91 -74.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039365071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.639 kcal (2) G-P(sol) polarization free energy of solvation -76.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds