Wall clock time and date at job start Fri Apr 10 2020 18:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00186 * 2 1 4 4 H 1.48506 * 109.46905 * 85.01249 * 3 2 1 5 5 H 1.48499 * 109.47173 * 325.01803 * 3 2 1 6 6 H 1.48499 * 109.47600 * 205.01325 * 3 2 1 7 7 C 1.38818 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99861 * 154.96743 * 7 2 1 9 9 N 1.36934 * 119.99758 * 334.97102 * 7 2 1 10 10 C 1.46928 * 120.55396 * 331.29702 * 9 7 2 11 11 C 1.52871 * 108.94608 * 234.29791 * 10 9 7 12 12 C 1.52108 * 109.52034 * 306.94985 * 11 10 9 13 13 C 1.54393 * 110.51429 * 295.74673 * 12 11 10 14 14 C 1.54461 * 102.87091 * 276.66466 * 13 12 11 15 15 N 1.47084 * 107.29663 * 338.49498 * 14 13 12 16 16 C 1.34775 * 125.62840 * 179.01148 * 15 14 13 17 17 O 1.21277 * 120.00140 * 175.10043 * 16 15 14 18 18 C 1.50700 * 120.00031 * 355.10731 * 16 15 14 19 19 H 1.09007 * 109.52090 * 311.38400 * 18 16 15 20 20 C 1.53138 * 109.52705 * 71.58039 * 18 16 15 21 21 O 1.43079 * 109.15315 * 175.21508 * 20 18 16 22 22 C 1.43079 * 113.59105 * 302.05150 * 21 20 18 23 23 C 1.53138 * 109.15008 * 57.94793 * 22 21 20 24 24 O 1.43065 * 109.15564 * 304.68835 * 23 22 21 25 25 C 1.47577 * 108.74321 * 359.01633 * 15 14 13 26 26 C 1.52100 * 111.60479 * 59.14947 * 12 11 10 27 27 C 1.46929 * 120.55231 * 151.57947 * 9 7 2 28 28 H 0.97003 * 120.00030 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.60304 * 354.11422 * 10 9 7 30 30 H 1.09003 * 109.59771 * 114.58964 * 10 9 7 31 31 H 1.08997 * 109.54730 * 186.86582 * 11 10 9 32 32 H 1.08993 * 109.32462 * 66.89859 * 11 10 9 33 33 H 1.09002 * 110.73258 * 35.00291 * 13 12 11 34 34 H 1.09000 * 110.73744 * 158.31588 * 13 12 11 35 35 H 1.08997 * 109.88006 * 97.92432 * 14 13 12 36 36 H 1.09001 * 109.87612 * 219.07401 * 14 13 12 37 37 H 1.09001 * 109.52752 * 295.12219 * 20 18 16 38 38 H 1.08997 * 109.52260 * 55.31420 * 20 18 16 39 39 H 1.08995 * 109.52232 * 298.04760 * 22 21 20 40 40 H 1.08994 * 109.57560 * 177.88385 * 22 21 20 41 41 H 1.09001 * 109.52396 * 184.78167 * 23 22 21 42 42 H 1.09010 * 109.52331 * 64.59316 * 23 22 21 43 43 H 1.09000 * 110.37180 * 264.48986 * 25 15 14 44 44 H 1.08992 * 110.37720 * 142.14572 * 25 15 14 45 45 H 1.09002 * 109.47849 * 180.71640 * 26 12 11 46 46 H 1.09007 * 109.48105 * 60.70093 * 26 12 11 47 47 H 1.09000 * 109.59888 * 245.41379 * 27 9 7 48 48 H 1.09006 * 109.60084 * 5.72180 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 1.5043 2.6200 -0.8027 6 1 3.5965 1.4121 -0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0142 -1.2459 -0.3963 9 7 1.4220 -2.3326 0.5007 10 6 0.4078 -2.2400 1.5598 11 6 0.8308 -3.1267 2.7310 12 6 1.1173 -4.5327 2.2264 13 6 -0.1678 -5.1785 1.6650 14 6 -0.8590 -5.7275 2.9325 15 7 0.1768 -5.8752 3.9663 16 6 -0.0272 -6.3099 5.2256 17 8 0.9158 -6.4772 5.9696 18 6 -1.4271 -6.5882 5.7092 19 1 -2.0725 -5.7456 5.4609 20 6 -1.9583 -7.8572 5.0363 21 8 -3.2414 -8.1764 5.5829 22 6 -3.2284 -8.3672 7.0009 23 6 -2.6972 -7.0982 7.6737 24 8 -1.4142 -6.7790 7.1271 25 6 1.4763 -5.4687 3.3971 26 6 2.2184 -4.5377 1.1771 27 6 1.7989 -3.6588 -0.0073 28 1 -0.4850 0.8401 0.0004 29 1 0.3243 -1.2068 1.8968 30 1 -0.5539 -2.5807 1.1759 31 1 0.0301 -3.1618 3.4696 32 1 1.7300 -2.7146 3.1889 33 1 -0.7937 -4.4312 1.1772 34 1 0.0759 -5.9880 0.9769 35 1 -1.6231 -5.0276 3.2707 36 1 -1.3098 -6.6966 2.7185 37 1 -2.0509 -7.6891 3.9633 38 1 -1.2693 -8.6818 5.2186 39 1 -2.5821 -9.2090 7.2492 40 1 -4.2405 -8.5691 7.3515 41 1 -2.6046 -7.2662 8.7466 42 1 -3.3863 -6.2735 7.4913 43 1 2.0204 -6.3402 3.0331 44 1 2.0668 -4.9355 4.1420 45 1 2.3863 -5.5576 0.8313 46 1 3.1375 -4.1457 1.6128 47 1 0.9472 -4.1115 -0.5150 48 1 2.6304 -3.5602 -0.7053 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040619240.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:32 Heat of formation + Delta-G solvation = -92.474741 kcal Electronic energy + Delta-G solvation = -29213.140274 eV Core-core repulsion = 25269.017107 eV Total energy + Delta-G solvation = -3944.123167 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.93392 -39.89043 -38.33231 -36.38337 -35.85866 -33.33793 -32.08395 -30.85288 -30.10598 -29.60503 -28.67875 -26.87874 -25.38614 -23.99158 -23.16574 -22.32842 -21.96324 -20.93364 -19.67005 -18.31602 -17.56347 -17.15771 -16.91649 -16.56172 -16.12341 -15.97619 -15.51766 -15.37861 -14.93180 -14.42604 -14.06152 -13.90642 -13.74489 -13.66051 -13.43800 -13.17832 -13.05364 -12.77977 -12.44330 -12.37717 -12.21532 -11.95567 -11.58702 -11.39024 -11.21888 -11.14703 -10.97143 -10.78157 -10.72282 -10.48380 -10.26387 -10.16845 -9.91040 -9.88869 -9.60670 -9.55835 -9.43969 -8.66136 -8.45225 -6.71495 -5.84847 -3.21893 2.37863 2.54085 3.28121 3.36799 3.45384 3.46215 3.57969 4.13091 4.25942 4.48768 4.52135 4.58169 4.64024 4.68529 4.74527 4.86539 4.94094 5.09736 5.16000 5.24973 5.29916 5.31426 5.36070 5.38715 5.48915 5.60950 5.72946 5.85989 5.87499 6.01142 6.03438 6.13529 6.22913 6.28596 6.43377 6.50204 6.55362 6.60832 6.63198 6.67960 6.80398 6.93024 7.24973 7.41164 7.50337 7.80482 8.03707 8.40695 9.16598 9.81926 10.39306 11.23541 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.023197 B = 0.002865 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.766794 B = 9771.592876 C =10019.972908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.008 3.992 3 Si 0.893 3.107 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.259 4.259 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.175 3.825 11 C -0.125 4.125 12 C -0.055 4.055 13 C -0.123 4.123 14 C 0.094 3.906 15 N -0.611 5.611 16 C 0.537 3.463 17 O -0.520 6.520 18 C 0.042 3.958 19 H 0.094 0.906 20 C 0.035 3.965 21 O -0.372 6.372 22 C 0.020 3.980 23 C 0.023 3.977 24 O -0.352 6.352 25 C 0.116 3.884 26 C -0.118 4.118 27 C 0.148 3.852 28 H 0.253 0.747 29 H 0.076 0.924 30 H 0.021 0.979 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.115 0.885 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.019 0.981 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.888 -16.505 9.855 20.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.192 4.192 3 Si 0.723 3.277 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.388 4.388 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.049 3.951 11 C -0.164 4.164 12 C -0.056 4.056 13 C -0.161 4.161 14 C -0.029 4.029 15 N -0.346 5.346 16 C 0.323 3.677 17 O -0.395 6.395 18 C -0.020 4.020 19 H 0.112 0.888 20 C -0.042 4.042 21 O -0.291 6.291 22 C -0.057 4.057 23 C -0.054 4.054 24 O -0.270 6.270 25 C -0.005 4.005 26 C -0.158 4.158 27 C 0.021 3.979 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.132 0.868 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.037 0.963 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.508 -16.483 10.325 20.510 hybrid contribution 0.254 0.946 0.139 0.990 sum -6.254 -15.537 10.464 19.748 Atomic orbital electron populations 1.70135 1.05392 1.25640 1.52410 1.24961 0.95004 0.98544 1.00669 0.86418 0.79563 0.84067 0.77652 1.21465 1.21887 1.20316 1.19134 0.95890 0.86360 1.37454 0.91754 1.44020 1.46704 1.00714 1.39759 1.20620 0.90276 0.98317 0.85889 1.21920 1.00790 0.94018 0.99705 1.21010 0.95396 0.95287 0.93932 1.22727 0.97355 1.00695 0.95287 1.22320 0.91225 1.00498 0.88817 1.48466 1.10944 1.64905 1.10334 1.19458 0.89757 0.77785 0.80705 1.90727 1.43469 1.51072 1.54253 1.22529 0.95792 0.99550 0.84089 0.88816 1.23215 0.86044 0.95566 0.99368 1.88132 1.29092 1.90707 1.21126 1.23322 1.03219 0.97501 0.81617 1.23353 0.85609 0.97041 0.99409 1.88222 1.29417 1.90954 1.18373 1.22409 0.84543 0.97770 0.95791 1.21851 0.97285 0.99462 0.97173 1.20900 0.97495 0.86641 0.92814 0.93697 0.90596 0.96106 0.93301 0.92364 0.88621 0.90684 0.91088 0.91490 0.86763 0.91417 0.91826 0.87371 0.87145 0.91723 0.91529 0.90492 0.92758 0.91949 0.96293 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.25 11.78 55.49 0.65 -24.60 16 2 C 0.01 0.22 4.67 -17.43 -0.08 0.13 16 3 Si 0.89 21.32 29.62 -169.99 -5.04 16.29 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.26 -6.89 9.50 -15.06 -0.14 -7.04 16 8 H 0.06 1.71 7.94 -52.49 -0.42 1.29 16 9 N -0.59 -13.89 2.98 -172.42 -0.51 -14.41 16 10 C 0.17 3.86 5.05 -3.88 -0.02 3.84 16 11 C -0.13 -2.23 4.84 -27.25 -0.13 -2.36 16 12 C -0.06 -0.82 0.55 -154.11 -0.08 -0.91 16 13 C -0.12 -1.57 4.92 -25.23 -0.12 -1.70 16 14 C 0.09 1.03 5.66 -2.96 -0.02 1.02 16 15 N -0.61 -8.11 3.32 -170.76 -0.57 -8.68 16 16 C 0.54 7.90 7.18 -10.99 -0.08 7.82 16 17 O -0.52 -9.76 16.85 -14.04 -0.24 -9.99 16 18 C 0.04 0.50 2.66 -27.81 -0.07 0.43 16 19 H 0.09 1.01 7.90 -51.92 -0.41 0.60 16 20 C 0.04 0.35 6.19 37.23 0.23 0.58 16 21 O -0.37 -3.72 10.85 -48.80 -0.53 -4.25 16 22 C 0.02 0.16 7.05 37.23 0.26 0.42 16 23 C 0.02 0.19 7.05 37.23 0.26 0.46 16 24 O -0.35 -4.57 10.05 -62.40 -0.63 -5.20 16 25 C 0.12 1.65 5.80 -2.87 -0.02 1.63 16 26 C -0.12 -1.84 4.84 -27.01 -0.13 -1.97 16 27 C 0.15 2.85 6.25 -3.63 -0.02 2.83 16 28 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.08 1.93 6.33 -51.93 -0.33 1.60 16 30 H 0.02 0.47 6.56 -51.93 -0.34 0.13 16 31 H 0.05 0.82 7.82 -51.93 -0.41 0.42 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.10 1.39 6.19 -51.93 -0.32 1.06 16 34 H 0.07 0.86 7.98 -51.93 -0.41 0.45 16 35 H 0.07 0.75 7.97 -51.93 -0.41 0.33 16 36 H 0.07 0.58 6.07 -51.93 -0.31 0.26 16 37 H 0.11 0.94 5.57 -51.93 -0.29 0.66 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 43 H 0.07 0.88 7.99 -51.93 -0.41 0.46 16 44 H 0.08 1.20 7.98 -51.93 -0.41 0.79 16 45 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 46 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 47 H 0.02 0.36 7.62 -51.93 -0.40 -0.03 16 48 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 LS Contribution 364.21 15.07 5.49 5.49 Total: -1.00 -32.45 364.21 -9.34 -41.79 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.81 Total: -1.61 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -0.17 Total: 5.17 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.43 Total: -47.68 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -1.39 Total: -19.44 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.04 Total: 16.29 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.45 -9.34 -41.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040619240.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.686 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds