Wall clock time and date at job start Fri Apr 10 2020 18:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99953 * 2 1 4 4 H 1.48495 * 109.47210 * 269.99743 * 3 2 1 5 5 H 1.48501 * 109.46915 * 29.99667 * 3 2 1 6 6 H 1.48493 * 109.47028 * 149.99548 * 3 2 1 7 7 C 1.38808 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00148 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99708 * 359.97438 * 7 2 1 10 10 C 1.47539 * 125.67588 * 0.02562 * 9 7 2 11 11 C 1.55135 * 104.97777 * 203.90710 * 10 9 7 12 12 C 1.53899 * 101.45481 * 324.25392 * 11 10 9 13 13 C 1.53387 * 111.14312 * 273.68660 * 12 11 10 14 14 C 1.55220 * 102.50752 * 217.34522 * 13 12 11 15 15 N 1.48233 * 103.42582 * 36.33139 * 14 13 12 16 16 C 1.34775 * 127.00659 * 141.42925 * 15 14 13 17 17 O 1.21282 * 119.99959 * 180.02562 * 16 15 14 18 18 C 1.50703 * 120.00448 * 0.02868 * 16 15 14 19 19 C 1.52996 * 109.47812 * 180.02562 * 18 16 15 20 20 O 1.42973 * 109.46642 * 295.00157 * 19 18 16 21 21 C 1.43093 * 113.76810 * 181.20439 * 20 19 18 22 22 C 1.53257 * 108.94240 * 57.96541 * 21 20 19 23 23 C 1.53262 * 108.84809 * 305.47700 * 22 21 20 24 24 O 1.42967 * 109.47413 * 174.99972 * 19 18 16 25 25 C 1.47839 * 105.98769 * 321.45153 * 15 14 13 26 26 C 1.47339 * 125.66650 * 180.02562 * 9 7 2 27 27 H 0.97006 * 120.00112 * 0.02562 * 1 2 3 28 28 H 1.09001 * 110.33785 * 322.78003 * 10 9 7 29 29 H 1.09000 * 110.33657 * 84.92203 * 10 9 7 30 30 H 1.08996 * 111.02819 * 206.21338 * 11 10 9 31 31 H 1.08999 * 111.02983 * 82.29966 * 11 10 9 32 32 H 1.09004 * 110.79759 * 335.59748 * 13 12 11 33 33 H 1.08994 * 110.80357 * 99.08703 * 13 12 11 34 34 H 1.09000 * 110.63117 * 277.85142 * 14 13 12 35 35 H 1.09001 * 110.63518 * 154.81625 * 14 13 12 36 36 H 1.09009 * 109.46596 * 300.00038 * 18 16 15 37 37 H 1.09002 * 109.47073 * 59.99457 * 18 16 15 38 38 H 1.09002 * 109.47003 * 54.99321 * 19 18 16 39 39 H 1.09001 * 109.56023 * 298.13235 * 21 20 19 40 40 H 1.08993 * 109.64831 * 177.85787 * 21 20 19 41 41 H 1.09003 * 109.57740 * 185.66571 * 22 21 20 42 42 H 1.08996 * 109.68367 * 65.34847 * 22 21 20 43 43 H 1.08999 * 109.55802 * 294.68645 * 23 22 21 44 44 H 1.09004 * 109.64865 * 174.41345 * 23 22 21 45 45 H 1.08994 * 110.03284 * 265.89843 * 25 15 14 46 46 H 1.09002 * 110.03635 * 144.45921 * 25 15 14 47 47 H 1.08999 * 109.97425 * 58.68824 * 26 9 7 48 48 H 1.08997 * 109.97221 * 297.42058 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 -0.1426 -2.5339 0.0017 11 6 -0.4062 -3.9363 0.6103 12 6 0.7826 -4.7395 0.0533 13 6 0.4655 -5.3050 -1.3368 14 6 1.1554 -6.6949 -1.2997 15 7 0.9511 -7.1434 0.0984 16 6 0.6738 -8.3942 0.5167 17 8 0.5301 -8.6200 1.6997 18 6 0.5423 -9.5122 -0.4852 19 6 0.2271 -10.8184 0.2464 20 8 1.3355 -11.1805 1.0739 21 6 1.1486 -12.4092 1.7830 22 6 0.8870 -13.5317 0.7729 23 6 -0.2907 -13.1286 -0.1212 24 8 -0.0124 -11.8542 -0.7094 25 6 1.1129 -5.9389 0.9401 26 6 1.9326 -3.7306 0.0028 27 1 -0.4850 0.8401 -0.0004 28 1 -0.6001 -1.7609 0.6193 29 1 -0.5285 -2.4822 -1.0164 30 1 -1.3533 -4.3441 0.2574 31 1 -0.3788 -3.9015 1.6994 32 1 -0.6105 -5.4105 -1.4755 33 1 0.8979 -4.6789 -2.1172 34 1 2.2185 -6.6021 -1.5216 35 1 0.6749 -7.3810 -1.9972 36 1 -0.2641 -9.2827 -1.1819 37 1 1.4775 -9.6196 -1.0346 38 1 -0.6596 -10.6832 0.8657 39 1 0.2953 -12.3167 2.4548 40 1 2.0442 -12.6391 2.3601 41 1 0.6438 -14.4519 1.3043 42 1 1.7743 -13.6879 0.1596 43 1 -1.1985 -13.0633 0.4785 44 1 -0.4253 -13.8717 -0.9073 45 1 2.1403 -5.8679 1.2968 46 1 0.4256 -5.9788 1.7853 47 1 2.5711 -3.8497 0.8781 48 1 2.5158 -3.8762 -0.9064 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041229625.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:39 Heat of formation + Delta-G solvation = -94.066046 kcal Electronic energy + Delta-G solvation = -28323.493359 eV Core-core repulsion = 24379.301188 eV Total energy + Delta-G solvation = -3944.192171 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.54173 -39.90818 -38.33360 -35.93650 -35.64491 -33.51946 -32.70087 -30.84202 -30.00819 -29.28318 -28.28117 -26.29900 -25.69848 -24.41172 -23.02561 -22.60990 -21.46791 -20.31608 -19.30262 -18.70608 -17.80807 -17.06586 -16.84668 -16.61382 -16.22109 -15.64372 -15.40337 -15.05053 -14.95222 -14.75435 -14.11183 -14.02740 -13.81277 -13.60459 -13.33852 -13.13890 -12.62205 -12.48815 -12.25517 -12.15005 -11.87245 -11.83975 -11.54482 -11.42864 -11.42291 -11.24602 -11.17845 -10.89329 -10.76776 -10.32817 -10.19780 -10.05347 -9.96797 -9.94762 -9.80605 -9.74223 -9.46342 -8.63989 -8.58536 -6.82704 -5.64850 -3.06350 2.65646 2.72968 3.37787 3.40249 3.45238 3.46330 3.47402 4.34787 4.36339 4.43226 4.49040 4.57252 4.70596 4.76695 4.79933 4.95407 4.99265 5.03674 5.05383 5.19460 5.32561 5.36595 5.39902 5.45170 5.45624 5.49355 5.54908 5.66307 5.83251 5.88033 5.96083 6.06658 6.13083 6.23211 6.36927 6.37178 6.52377 6.56188 6.67151 6.74704 6.86481 6.88970 7.52073 7.59121 7.63088 7.86501 8.17878 8.36456 9.22407 9.83161 10.48361 11.38994 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.043064 B = 0.002220 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.046063 B =12611.920108 C =12726.119941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.221 4.221 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.155 3.845 11 C -0.132 4.132 12 C -0.084 4.084 13 C -0.114 4.114 14 C 0.097 3.903 15 N -0.620 5.620 16 C 0.538 3.462 17 O -0.536 6.536 18 C -0.123 4.123 19 C 0.265 3.735 20 O -0.377 6.377 21 C 0.058 3.942 22 C -0.194 4.194 23 C 0.059 3.941 24 O -0.396 6.396 25 C 0.124 3.876 26 C 0.151 3.849 27 H 0.252 0.748 28 H 0.104 0.896 29 H 0.012 0.988 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.100 0.900 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.025 0.975 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.244 -25.461 -2.121 25.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.030 3.970 11 C -0.170 4.170 12 C -0.085 4.085 13 C -0.152 4.152 14 C -0.026 4.026 15 N -0.354 5.354 16 C 0.326 3.674 17 O -0.413 6.413 18 C -0.163 4.163 19 C 0.169 3.831 20 O -0.297 6.297 21 C -0.019 4.019 22 C -0.232 4.232 23 C -0.017 4.017 24 O -0.317 6.317 25 C 0.002 3.998 26 C 0.025 3.975 27 H 0.062 0.938 28 H 0.122 0.878 29 H 0.030 0.970 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.118 0.882 45 H 0.086 0.914 46 H 0.096 0.904 47 H 0.043 0.957 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -1.200 -25.295 -1.619 25.376 hybrid contribution 0.305 0.565 0.094 0.649 sum -0.895 -24.730 -1.526 24.793 Atomic orbital electron populations 1.69809 1.04870 1.24735 1.57697 1.24787 0.95731 0.97705 1.02529 0.86076 0.78539 0.83385 0.77524 1.21676 1.21690 1.20716 1.19072 0.90490 0.82449 1.42932 0.90511 1.44599 1.01927 0.99602 1.86895 1.21951 0.84573 0.92324 0.98161 1.22990 0.95141 0.98808 1.00102 1.21580 0.98473 0.93943 0.94527 1.22625 1.00836 0.94446 0.97305 1.22730 1.00960 0.96387 0.82507 1.48930 1.69860 1.07324 1.09317 1.19707 0.76718 0.81905 0.89100 1.90725 1.50655 1.82296 1.17581 1.21425 1.06045 0.90480 0.98374 1.22870 0.89134 0.86486 0.84575 1.88188 1.41817 1.39674 1.60045 1.22607 1.02669 0.83303 0.93283 1.22815 1.00660 0.99941 0.99764 1.22637 0.96185 0.85229 0.97679 1.88054 1.90363 1.18697 1.34555 1.22033 1.01604 0.82193 0.93948 1.21213 0.92728 0.85571 0.98029 0.93767 0.87793 0.96954 0.92229 0.91986 0.90821 0.89425 0.90630 0.90390 0.86699 0.87288 0.91716 0.92744 0.88329 0.89726 0.89984 0.92737 0.88214 0.91387 0.90440 0.95681 0.95753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.70 10.09 55.49 0.56 -26.14 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.22 -6.09 10.28 -15.06 -0.15 -6.25 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -15.14 3.41 -170.36 -0.58 -15.72 16 10 C 0.15 3.67 5.80 -2.34 -0.01 3.65 16 11 C -0.13 -2.46 5.90 -25.13 -0.15 -2.60 16 12 C -0.08 -1.40 0.74 -153.92 -0.11 -1.51 16 13 C -0.11 -1.57 6.05 -25.35 -0.15 -1.72 16 14 C 0.10 1.09 6.96 -1.91 -0.01 1.08 16 15 N -0.62 -8.52 3.31 -169.95 -0.56 -9.09 16 16 C 0.54 7.67 7.77 -10.98 -0.09 7.58 16 17 O -0.54 -9.56 15.77 -8.86 -0.14 -9.70 16 18 C -0.12 -1.33 4.72 -27.88 -0.13 -1.46 16 19 C 0.26 3.07 2.80 37.16 0.10 3.17 16 20 O -0.38 -4.86 9.77 -64.76 -0.63 -5.49 16 21 C 0.06 0.53 6.96 37.29 0.26 0.79 16 22 C -0.19 -1.34 6.35 -26.46 -0.17 -1.50 16 23 C 0.06 0.44 6.96 37.29 0.26 0.70 16 24 O -0.40 -4.17 10.54 -59.03 -0.62 -4.80 16 25 C 0.12 1.94 6.30 -3.42 -0.02 1.92 16 26 C 0.15 3.03 6.35 -3.55 -0.02 3.00 16 27 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.10 2.82 5.89 -51.93 -0.31 2.51 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 1.00 7.65 -51.93 -0.40 0.60 16 31 H 0.06 1.17 7.89 -51.93 -0.41 0.76 16 32 H 0.07 0.98 7.59 -51.93 -0.39 0.58 16 33 H 0.09 1.27 7.61 -51.93 -0.40 0.87 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.67 7.25 -51.93 -0.38 0.29 16 36 H 0.11 0.98 7.90 -51.92 -0.41 0.57 16 37 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 0.78 7.96 -51.93 -0.41 0.36 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 1.07 7.40 -51.93 -0.38 0.68 16 46 H 0.08 1.28 7.51 -51.93 -0.39 0.89 16 47 H 0.03 0.51 7.49 -51.93 -0.39 0.12 16 48 H 0.02 0.48 7.60 -51.93 -0.39 0.09 16 LS Contribution 372.34 15.07 5.61 5.61 Total: -1.00 -33.22 372.34 -9.90 -43.12 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -8.01 Total: -1.17 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -0.50 Total: 6.41 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.58 Total: -50.95 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -1.39 Total: -19.98 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.22 -9.90 -43.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041229625.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.943 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds