Wall clock time and date at job start Fri Apr 10 2020 18:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99953 * 2 1 4 4 H 1.48495 * 109.47210 * 269.99743 * 3 2 1 5 5 H 1.48501 * 109.46915 * 29.99667 * 3 2 1 6 6 H 1.48493 * 109.47028 * 149.99548 * 3 2 1 7 7 C 1.38808 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00148 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99708 * 359.97438 * 7 2 1 10 10 C 1.47539 * 125.67588 * 0.02562 * 9 7 2 11 11 C 1.55135 * 104.97777 * 203.90710 * 10 9 7 12 12 C 1.53899 * 101.45481 * 324.25392 * 11 10 9 13 13 C 1.53387 * 111.14312 * 273.68660 * 12 11 10 14 14 C 1.55220 * 102.50752 * 217.34522 * 13 12 11 15 15 N 1.48233 * 103.42582 * 36.33139 * 14 13 12 16 16 C 1.34775 * 127.00659 * 141.42925 * 15 14 13 17 17 O 1.21282 * 119.99959 * 180.02562 * 16 15 14 18 18 C 1.50703 * 120.00448 * 0.02868 * 16 15 14 19 19 C 1.52996 * 109.47812 * 180.02562 * 18 16 15 20 20 O 1.42973 * 109.46642 * 295.00157 * 19 18 16 21 21 C 1.43093 * 113.76810 * 181.20439 * 20 19 18 22 22 C 1.53257 * 108.94240 * 57.96541 * 21 20 19 23 23 C 1.53262 * 108.84809 * 305.47700 * 22 21 20 24 24 O 1.42967 * 109.47413 * 174.99972 * 19 18 16 25 25 C 1.47839 * 105.98769 * 321.45153 * 15 14 13 26 26 C 1.47339 * 125.66650 * 180.02562 * 9 7 2 27 27 H 0.97006 * 120.00112 * 0.02562 * 1 2 3 28 28 H 1.09001 * 110.33785 * 322.78003 * 10 9 7 29 29 H 1.09000 * 110.33657 * 84.92203 * 10 9 7 30 30 H 1.08996 * 111.02819 * 206.21338 * 11 10 9 31 31 H 1.08999 * 111.02983 * 82.29966 * 11 10 9 32 32 H 1.09004 * 110.79759 * 335.59748 * 13 12 11 33 33 H 1.08994 * 110.80357 * 99.08703 * 13 12 11 34 34 H 1.09000 * 110.63117 * 277.85142 * 14 13 12 35 35 H 1.09001 * 110.63518 * 154.81625 * 14 13 12 36 36 H 1.09009 * 109.46596 * 300.00038 * 18 16 15 37 37 H 1.09002 * 109.47073 * 59.99457 * 18 16 15 38 38 H 1.09002 * 109.47003 * 54.99321 * 19 18 16 39 39 H 1.09001 * 109.56023 * 298.13235 * 21 20 19 40 40 H 1.08993 * 109.64831 * 177.85787 * 21 20 19 41 41 H 1.09003 * 109.57740 * 185.66571 * 22 21 20 42 42 H 1.08996 * 109.68367 * 65.34847 * 22 21 20 43 43 H 1.08999 * 109.55802 * 294.68645 * 23 22 21 44 44 H 1.09004 * 109.64865 * 174.41345 * 23 22 21 45 45 H 1.08994 * 110.03284 * 265.89843 * 25 15 14 46 46 H 1.09002 * 110.03635 * 144.45921 * 25 15 14 47 47 H 1.08999 * 109.97425 * 58.68824 * 26 9 7 48 48 H 1.08997 * 109.97221 * 297.42058 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 -0.1426 -2.5339 0.0017 11 6 -0.4062 -3.9363 0.6103 12 6 0.7826 -4.7395 0.0533 13 6 0.4655 -5.3050 -1.3368 14 6 1.1554 -6.6949 -1.2997 15 7 0.9511 -7.1434 0.0984 16 6 0.6738 -8.3942 0.5167 17 8 0.5301 -8.6200 1.6997 18 6 0.5423 -9.5122 -0.4852 19 6 0.2271 -10.8184 0.2464 20 8 1.3355 -11.1805 1.0739 21 6 1.1486 -12.4092 1.7830 22 6 0.8870 -13.5317 0.7729 23 6 -0.2907 -13.1286 -0.1212 24 8 -0.0124 -11.8542 -0.7094 25 6 1.1129 -5.9389 0.9401 26 6 1.9326 -3.7306 0.0028 27 1 -0.4850 0.8401 -0.0004 28 1 -0.6001 -1.7609 0.6193 29 1 -0.5285 -2.4822 -1.0164 30 1 -1.3533 -4.3441 0.2574 31 1 -0.3788 -3.9015 1.6994 32 1 -0.6105 -5.4105 -1.4755 33 1 0.8979 -4.6789 -2.1172 34 1 2.2185 -6.6021 -1.5216 35 1 0.6749 -7.3810 -1.9972 36 1 -0.2641 -9.2827 -1.1819 37 1 1.4775 -9.6196 -1.0346 38 1 -0.6596 -10.6832 0.8657 39 1 0.2953 -12.3167 2.4548 40 1 2.0442 -12.6391 2.3601 41 1 0.6438 -14.4519 1.3043 42 1 1.7743 -13.6879 0.1596 43 1 -1.1985 -13.0633 0.4785 44 1 -0.4253 -13.8717 -0.9073 45 1 2.1403 -5.8679 1.2968 46 1 0.4256 -5.9788 1.7853 47 1 2.5711 -3.8497 0.8781 48 1 2.5158 -3.8762 -0.9064 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041229625.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:38 Heat of formation + Delta-G solvation = -115.090514 kcal Electronic energy + Delta-G solvation = -28324.405049 eV Core-core repulsion = 24379.301188 eV Total energy + Delta-G solvation = -3945.103860 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.57776 -40.87839 -39.61274 -37.17860 -36.67517 -34.55186 -34.15431 -32.19657 -31.15294 -30.70701 -29.74122 -27.37662 -26.92943 -25.81171 -24.07450 -23.85461 -22.19284 -22.11984 -20.37538 -20.05400 -18.88302 -18.58166 -17.92793 -17.44459 -17.19668 -16.80832 -16.60249 -16.30828 -15.87675 -15.72816 -15.64811 -15.59067 -15.10779 -14.50470 -14.29808 -14.17860 -14.00714 -13.81319 -13.57126 -13.31087 -13.19256 -13.07765 -12.95166 -12.69079 -12.61423 -12.42407 -12.38389 -12.11377 -12.08405 -12.01239 -11.76024 -11.55976 -11.40199 -11.17698 -11.02517 -10.92347 -10.71160 -10.68082 -9.72473 -8.85599 -7.75525 -5.19194 1.47601 1.49142 1.57798 1.59530 1.75490 2.50838 2.64209 2.66067 3.32032 3.44876 3.59837 3.63559 3.70287 3.77401 3.78945 3.82910 3.89401 4.07618 4.23568 4.27155 4.30122 4.39580 4.41251 4.44159 4.48067 4.63342 4.65712 4.71258 4.76348 4.82083 4.83144 4.84930 4.88823 4.95369 5.04015 5.07712 5.11258 5.22021 5.35379 5.40244 5.49185 5.66504 5.83222 5.84697 6.14515 6.32847 6.53537 7.10044 7.12914 7.80336 8.44568 9.26298 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.043064 B = 0.002220 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.046063 B =12611.920108 C =12726.119941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.271 1.271 7 C -0.235 4.235 8 H 0.080 0.920 9 N -0.626 5.626 10 C 0.160 3.840 11 C -0.119 4.119 12 C -0.072 4.072 13 C -0.111 4.111 14 C 0.103 3.897 15 N -0.619 5.619 16 C 0.535 3.465 17 O -0.579 6.579 18 C -0.115 4.115 19 C 0.264 3.736 20 O -0.407 6.407 21 C 0.046 3.954 22 C -0.185 4.185 23 C 0.048 3.952 24 O -0.405 6.405 25 C 0.130 3.870 26 C 0.148 3.852 27 H 0.246 0.754 28 H 0.066 0.934 29 H -0.006 1.006 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.144 0.856 37 H 0.124 0.876 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.122 0.878 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.021 0.979 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.777 -27.755 -3.520 27.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.196 1.196 7 C -0.364 4.364 8 H 0.098 0.902 9 N -0.352 5.352 10 C 0.035 3.965 11 C -0.157 4.157 12 C -0.074 4.074 13 C -0.150 4.150 14 C -0.018 4.018 15 N -0.352 5.352 16 C 0.325 3.675 17 O -0.459 6.459 18 C -0.154 4.154 19 C 0.168 3.832 20 O -0.328 6.328 21 C -0.030 4.030 22 C -0.223 4.223 23 C -0.027 4.027 24 O -0.326 6.326 25 C 0.007 3.993 26 C 0.023 3.977 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.012 0.988 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.135 0.865 36 H 0.161 0.839 37 H 0.142 0.858 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.140 0.860 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.039 0.961 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.714 -27.627 -3.043 27.803 hybrid contribution 0.169 1.235 0.570 1.371 sum -0.545 -26.391 -2.472 26.513 Atomic orbital electron populations 1.70067 1.06150 1.24914 1.58785 1.25618 0.96640 1.00924 1.02961 0.85065 0.77563 0.79187 0.77442 1.21268 1.22170 1.19579 1.19442 0.90992 0.83778 1.42207 0.90181 1.44892 1.02706 1.00807 1.86822 1.21691 0.83991 0.94179 0.96627 1.22833 0.97253 0.96164 0.99488 1.21424 0.95846 0.93310 0.96792 1.22606 1.01811 0.95707 0.94829 1.22878 1.01864 0.95410 0.81667 1.48971 1.69486 1.06696 1.10078 1.20337 0.75540 0.82429 0.89179 1.90707 1.52505 1.82969 1.19674 1.21443 1.07845 0.88614 0.97545 1.22814 0.88506 0.87228 0.84640 1.88144 1.42584 1.41360 1.60671 1.22847 1.03129 0.83097 0.93922 1.22764 1.00333 1.00020 0.99183 1.22940 0.96657 0.84446 0.98699 1.88023 1.90431 1.19549 1.34583 1.21771 1.01061 0.82807 0.93646 1.21381 0.93939 0.84278 0.98126 0.94427 0.91595 0.98770 0.89957 0.92671 0.89849 0.89990 0.89469 0.86520 0.83872 0.85798 0.92898 0.92791 0.87611 0.87106 0.90357 0.91992 0.86035 0.91676 0.91730 0.96071 0.94690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.66 10.09 21.65 0.22 -56.44 16 2 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 3 Si 0.98 45.78 29.55 68.60 2.03 47.81 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.24 -13.14 10.28 84.03 0.86 -12.28 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.63 -31.89 3.41 -692.89 -2.36 -34.25 16 10 C 0.16 7.80 5.80 86.91 0.50 8.30 16 11 C -0.12 -4.41 5.90 31.63 0.19 -4.23 16 12 C -0.07 -2.33 0.74 -51.80 -0.04 -2.37 16 13 C -0.11 -2.79 6.05 31.49 0.19 -2.60 16 14 C 0.10 1.94 6.96 86.81 0.60 2.54 16 15 N -0.62 -15.57 3.31 -810.00 -2.68 -18.25 16 16 C 0.54 14.30 7.77 87.66 0.68 14.98 16 17 O -0.58 -20.45 15.77 10.75 0.17 -20.28 16 18 C -0.12 -2.16 4.72 29.85 0.14 -2.02 16 19 C 0.26 5.70 2.80 71.98 0.20 5.90 16 20 O -0.41 -10.12 9.77 -120.75 -1.18 -11.30 16 21 C 0.05 0.79 6.96 72.07 0.50 1.30 16 22 C -0.19 -2.15 6.35 30.77 0.20 -1.96 16 23 C 0.05 0.60 6.96 72.07 0.50 1.10 16 24 O -0.40 -7.60 10.54 -126.22 -1.33 -8.93 16 25 C 0.13 3.92 6.30 86.05 0.54 4.46 16 26 C 0.15 5.89 6.35 86.24 0.55 6.43 16 27 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 28 H 0.07 3.73 5.89 -2.39 -0.01 3.72 16 29 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 30 H 0.08 2.67 7.65 -2.39 -0.02 2.66 16 31 H 0.05 2.11 7.89 -2.39 -0.02 2.09 16 32 H 0.08 1.96 7.59 -2.38 -0.02 1.94 16 33 H 0.08 2.19 7.61 -2.39 -0.02 2.17 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.12 1.37 7.25 -2.39 -0.02 1.35 16 36 H 0.14 1.85 7.90 -2.38 -0.02 1.83 16 37 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.05 1.24 7.96 -2.39 -0.02 1.22 16 39 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.07 2.00 7.40 -2.39 -0.02 1.98 16 46 H 0.06 2.12 7.51 -2.39 -0.02 2.10 16 47 H 0.02 0.86 7.49 -2.39 -0.02 0.84 16 48 H 0.04 1.33 7.60 -2.39 -0.02 1.31 16 Total: -1.00 -74.51 372.34 1.89 -72.62 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.94 Total: 12.90 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 6.09 Total: 16.11 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -4.82 Total: -108.93 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -2.34 Total: -40.51 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -74.51 1.89 -72.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041229625.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.468 kcal (2) G-P(sol) polarization free energy of solvation -74.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds